CMakeLists.txt

project(AMDIS)

cmake_minimum_required(VERSION 2.6)

SET(LIB_DIR ${AMDIS_SOURCE_DIR}/lib)
SET(SOURCE_DIR ${AMDIS_SOURCE_DIR}/src)

#TODO: use the cmake build type
SET(MTL_INCLUDE_DIR ${LIB_DIR}/mtl4/ CACHE PATH "mtl4 directory")

set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -g -Wall -DDEBUG=0")
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -Wall -DDEBUG=1 -O0")
set(COMPILEFLAGS "-DAMDIS_VERSION=${CurrentRevision}")

#define the build type, empty can be everything and nothing
if(CMAKE_BUILD_TYPE STREQUAL "")
	set(CMAKE_BUILD_TYPE "Release")
endif()

#option(ENABLE_INTEL "use intel compiler" false)
SET(ENABLE_PARALLEL_DOMAIN "OFF" CACHE STRING "use parallel domain decomposition. please set to one of: PMTL, PETSC, OFF" )
option(USE_PETSC_DEV false)
option(ENABLE_ZOLTAN false)
option(ENABLE_UMFPACK "use umfpack solver" false)


if(ENABLE_INTEL)
	Message("please set the icc manually")
	INCLUDE (CMakeForceCompiler)
	CMAKE_FORCE_C_COMPILER(icc "intel C compiler")
	CMAKE_FORCE_CXX_COMPILER(icpc "intel C++ compiler")
	#SET(CMAKE_C_COMPILER "icc")
endif(ENABLE_INTEL)


find_package(Boost 1.42 REQUIRED)
if(Boost_FOUND)
  list(APPEND AMDIS_INCLUDE_DIRS ${Boost_INCLUDE_DIR})
  message("boost lib-dirs: ${Boost_LIBRARY_DIRS}")
  message("use the boost dir: ${Boost_INCLUDE_DIR}")
  if(WIN32)
	message("the windows find_boost does not set the boost library paths, please set it")
	SET(Boost_LIBRARY_DIRS CACHE PATH "The directory containing the boost libraries")
  endif(WIN32)
  list(APPEND AMDIS_LINK_DIRS ${Boost_LIBRARY_DIRS})
endif(Boost_FOUND)


SET(AMDIS_SRC ${SOURCE_DIR}/AdaptBase.cc
	      ${SOURCE_DIR}/AdaptInfo.cc
	      ${SOURCE_DIR}/AdaptInstationary.cc
	      ${SOURCE_DIR}/AdaptStationary.cc
	      ${SOURCE_DIR}/Assembler.cc
	      ${SOURCE_DIR}/BasisFunction.cc
	      ${SOURCE_DIR}/Boundary.cc
	      ${SOURCE_DIR}/BoundaryManager.cc
	      ${SOURCE_DIR}/Cholesky.cc
	      ${SOURCE_DIR}/CoarseningManager.cc
	      ${SOURCE_DIR}/CoarseningManager1d.cc
	      ${SOURCE_DIR}/CoarseningManager2d.cc
	      ${SOURCE_DIR}/CoarseningManager3d.cc
	      ${SOURCE_DIR}/ComponentTraverseInfo.cc
	      ${SOURCE_DIR}/CreatorMap.cc
	      ${SOURCE_DIR}/DOFAdmin.cc
	      ${SOURCE_DIR}/DOFIndexed.cc
	      ${SOURCE_DIR}/DOFMatrix.cc
	      ${SOURCE_DIR}/DOFVector.cc
	      ${SOURCE_DIR}/Debug.cc
	      ${SOURCE_DIR}/DirichletBC.cc
	      ${SOURCE_DIR}/DualTraverse.cc
	      ${SOURCE_DIR}/ElInfo.cc
	      ${SOURCE_DIR}/ElInfo1d.cc
	      ${SOURCE_DIR}/ElInfo2d.cc
	      ${SOURCE_DIR}/ElInfo3d.cc
	      ${SOURCE_DIR}/ElInfoStack.cc
	      ${SOURCE_DIR}/Element.cc
	      ${SOURCE_DIR}/ElementData.cc
	      ${SOURCE_DIR}/ElementDofIterator.cc
	      ${SOURCE_DIR}/Estimator.cc
	      ${SOURCE_DIR}/FiniteElemSpace.cc
	      ${SOURCE_DIR}/FirstOrderAssembler.cc
	      ${SOURCE_DIR}/FirstOrderTerm.cc
	      ${SOURCE_DIR}/FixVec.cc
	      ${SOURCE_DIR}/Global.cc
	      ${SOURCE_DIR}/GlobalDOFNumbering.cc
	      ${SOURCE_DIR}/GlobalElementNumbering.cc
              ${SOURCE_DIR}/Initfile.cc
	      ${SOURCE_DIR}/Lagrange.cc
	      ${SOURCE_DIR}/LeafData.cc
	      ${SOURCE_DIR}/Line.cc
	      ${SOURCE_DIR}/MacroElement.cc
	      ${SOURCE_DIR}/Marker.cc
	      ${SOURCE_DIR}/Mesh.cc
	      ${SOURCE_DIR}/MeshStructure.cc
	      ${SOURCE_DIR}/Operator.cc
	      ${SOURCE_DIR}/OperatorTerm.cc
	      ${SOURCE_DIR}/Parametric.cc
	      ${SOURCE_DIR}/PeriodicBC.cc
	      ${SOURCE_DIR}/ProblemImplicit.cc
	      ${SOURCE_DIR}/ProblemInstat.cc
	      ${SOURCE_DIR}/ProblemInterpol.cc
	      ${SOURCE_DIR}/ProblemStat.cc
	      ${SOURCE_DIR}/ProblemStatDbg.cc
	      ${SOURCE_DIR}/Projection.cc
	      ${SOURCE_DIR}/QPInfo.cc
	      ${SOURCE_DIR}/QPsiPhi.cc
	      ${SOURCE_DIR}/Quadrature.cc
	      ${SOURCE_DIR}/RCNeighbourList.cc
	      ${SOURCE_DIR}/Recovery.cc
	      ${SOURCE_DIR}/RecoveryEstimator.cc
	      ${SOURCE_DIR}/RefinementManager.cc
	      ${SOURCE_DIR}/RefinementManager1d.cc
	      ${SOURCE_DIR}/RefinementManager2d.cc
	      ${SOURCE_DIR}/RefinementManager3d.cc
	      ${SOURCE_DIR}/ResidualEstimator.cc
	      ${SOURCE_DIR}/RobinBC.cc
	      ${SOURCE_DIR}/ScalableQuadrature.cc
	      ${SOURCE_DIR}/SecondOrderAssembler.cc
	      ${SOURCE_DIR}/SecondOrderTerm.cc
	      ${SOURCE_DIR}/Serializer.cc
	      ${SOURCE_DIR}/StandardProblemIteration.cc
	      ${SOURCE_DIR}/SolverMatrix.cc
	      ${SOURCE_DIR}/SubAssembler.cc
	      ${SOURCE_DIR}/SubElInfo.cc
	      ${SOURCE_DIR}/SubQuadrature.cc
	      ${SOURCE_DIR}/SurfaceQuadrature.cc
	      ${SOURCE_DIR}/Tetrahedron.cc
	      ${SOURCE_DIR}/Traverse.cc
	      ${SOURCE_DIR}/Triangle.cc
	      ${SOURCE_DIR}/VertexVector.cc
	      ${SOURCE_DIR}/ZeroOrderAssembler.cc
	      ${SOURCE_DIR}/ZeroOrderTerm.cc
	      ${SOURCE_DIR}/io/ArhReader.cc
	      ${SOURCE_DIR}/io/ArhWriter.cc
	      ${SOURCE_DIR}/io/DataCollector.cc
	      ${SOURCE_DIR}/io/DofWriter.cc
	      ${SOURCE_DIR}/io/ElementFileWriter.cc
	      ${SOURCE_DIR}/io/FileWriter.cc
	      ${SOURCE_DIR}/io/GNUPlotWriter.cc
	      ${SOURCE_DIR}/io/MacroInfo.cc
	      ${SOURCE_DIR}/io/MacroReader.cc
	      ${SOURCE_DIR}/io/MacroWriter.cc
	      ${SOURCE_DIR}/io/PngWriter.cc
	      ${SOURCE_DIR}/io/PovrayWriter.cc
	      ${SOURCE_DIR}/io/ValueReader.cc
	      ${SOURCE_DIR}/io/ValueWriter.cc
	      ${SOURCE_DIR}/io/VtkWriter.cc
	      ${SOURCE_DIR}/parallel/InteriorBoundary.cc
	      ${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc
	      ${SOURCE_DIR}/time/RosenbrockMethod.cc
	      ${SOURCE_DIR}/time/RosenbrockStationary.cc
	      )

if(ENABLE_PARALLEL_DOMAIN)
	
	### Search for MPI compiler and get compile flags and include paths. ###

	find_package(MPI REQUIRED)
	if(MPI_FOUND)
	  list(APPEND COMPILEFLAGS "${MPI_COMPILE_FLAGS}")
	  include_directories(${MPI_INCLUDE_PATH})
	endif(MPI_FOUND)
 


	### Search for ParMetis ###

	find_file(PARMETIS_HEADER_FILE "parmetis.h" PATH ENV CPATH)
	if(PARMETIS_HEADER_FILE)
		get_filename_component(PARMETIS_INCLUDE_PATH "${PARMETIS_HEADER_FILE}" PATH CACHE)
		include_directories(${PARMETIS_INCLUDE_PATH})
	else()
		message(FATAL_ERROR "Could not find ParMetis header file!")
	endif(PARMETIS_HEADER_FILE)

	find_file(PARMETIS_LIB_FILE "libparmetis.a" PATH ENV LIBRARY_PATH)
	if(PARMETIS_LIB_FILE)
		get_filename_component(PARMETIS_LINK_PATH "${PARMETIS_LIB_FILE}" PATH CACHE)
		link_directories(${PARMETIS_LINK_PATH})
	else()
		message(FATAL_ERROR "Could not find ParMetis library file!")
	endif(PARMETIS_LIB_FILE)


	
	### Search for Zoltan ###

	if(ENABLE_ZOLTAN)
	  find_file(ZOLTAN_HEADER_FILE "zoltan_cpp.h" PATH ENV CPATH)
	  if(ZOLTAN_HEADER_FILE)
		get_filename_component(ZOLTAN_HEADER_DIR "${ZOLTAN_HEADER_FILE}" PATH CACHE)
		include_directories(${ZOLTAN_HEADER_DIR})
	  else()
		message(FATAL_ERROR "Could not find Zoltan include file!")
	  endif(ZOLTAN_HEADER_FILE)

	  list(APPEND COMPILEFLAGS "-DHAVE_ZOLTAN")
	endif(ENABLE_ZOLTAN)



	list(APPEND COMPILEFLAGS "-DHAVE_PARALLEL_DOMAIN_AMDIS=1")
	SET(PARALLEL_DOMAIN_AMDIS_SRC
               	${SOURCE_DIR}/parallel/ParMetisPartitioner.cc
		${SOURCE_DIR}/parallel/CheckerPartitioner.cc
		${SOURCE_DIR}/parallel/ElementObjectData.cc
		${SOURCE_DIR}/parallel/MeshDistributor.cc 
		${SOURCE_DIR}/parallel/MeshManipulation.cc
		${SOURCE_DIR}/parallel/MeshPartitioner.cc
		${SOURCE_DIR}/parallel/MpiHelper.cc
		${SOURCE_DIR}/parallel/ParallelDebug.cc
		${SOURCE_DIR}/parallel/ParallelProblemStatBase.cc
                ${SOURCE_DIR}/parallel/ParMetisPartitioner.cc
		${SOURCE_DIR}/parallel/StdMpi.cc
		${SOURCE_DIR}/parallel/ZoltanPartitioner.cc)
		
	if(ENABLE_PARALLEL_DOMAIN STREQUAL "PETSC")
		set(CMAKE_MODULE_PATH "${CMAKE_MODULE_PATH};/usr/share/cmake-2.8/Modules/;${CMAKE_SOURCE_DIR}/")
		set(PETSC_EXECUTABLE_RUNS ON)
		find_package(PETSc REQUIRED)
		include_directories(${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include)
		list(APPEND AMDIS_INCLUDE_DIRS ${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include)
		list(APPEND PARALLEL_DOMAIN_AMDIS_SRC ${SOURCE_DIR}/parallel/PetscSolver.cc
			${SOURCE_DIR}/parallel/PetscProblemStat.cc
			${SOURCE_DIR}/parallel/PetscSolverFeti.cc
			${SOURCE_DIR}/parallel/PetscSolverGlobalMatrix.cc
			${SOURCE_DIR}/parallel/PetscSolverSchur.cc)
	elseif(ENABLE_PARALLEL_DOMAIN STREQUAL "PMTL")
		set(MTL_INCLUDE_DIR "")
		find_package(MTL REQUIRED)
		list(APPEND COMPILEFLAGS "-DMTL_HAS_MPI" "-DHAVE_PARALLEL_MTL4")
		list(APPEND PARALLEL_DOMAIN_AMDIS_SRC ${SOURCE_DIR}/parallel/Mtl4Solver.cc)
		list(APPEND AMDIS_LIBS ${MTL_LIBRARIES})
	else()
		message(SEND_ERROR "Set the domain-decomposition version correctly.")
	endif()

	INSTALL(FILES ResolveCompilerPaths.cmake FindPackageMultipass.cmake FindPETSc.cmake
		DESTINATION share/amdis/)
	if(USE_PETSC_DEV)
	  list(APPEND COMPILEFLAGS "-DHAVE_PETSC_DEV")
	endif( USE_PETSC_DEV)
endif(ENABLE_PARALLEL_DOMAIN)



if(ENABLE_UMFPACK)
	find_file(UMFPACK_H umfpack.h
			    HINTS ENV CPATH /usr/include /usr/include/suitesparse /usr/include/ufsparse
			    DOC "headerfile umfpack.h for UMFPACK")
	if(UMFPACK_H)
		get_filename_component(UMFPACK_PATH ${UMFPACK_H} PATH)
		include_directories(${UMFPACK_PATH} ${UFCONFIG_PATH} ${AMD_PATH})
		list(APPEND COMPILEFLAGS "-DHAVE_UMFPACK=1" "-DMTL_HAS_UMFPACK")
	else()
		message(FATAL_ERROR "Could not find the UMFPACK headers.")
	endif()
	SET(RPM_DEPEND_STR "blas")
endif(ENABLE_UMFPACK)

SET(COMPOSITE_SOURCE_DIR ${SOURCE_DIR}/compositeFEM)
SET(COMPOSITE_FEM_SRC ${COMPOSITE_SOURCE_DIR}/CFE_Integration.cc 
		      ${COMPOSITE_SOURCE_DIR}/CFE_NormAndErrorFcts.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMMethods.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMOperator.cc 
		      ${COMPOSITE_SOURCE_DIR}/LevelSetAdaptMesh.cc 
		      ${COMPOSITE_SOURCE_DIR}/PenaltyOperator.cc 
		      ${COMPOSITE_SOURCE_DIR}/ElementLevelSet.cc 
		      ${COMPOSITE_SOURCE_DIR}/SubPolytope.cc 
		      ${COMPOSITE_SOURCE_DIR}/SubElementAssembler.cc )

set(REINIT_SOURCE_DIR ${SOURCE_DIR}/reinit)
file(GLOB REINIT_SRC ${REINIT_SOURCE_DIR}/*.cc)
include_directories(${REINIT_SOURCE_DIR})


#muparser includes
set(MUPARSER_SOURCE_DIR ${AMDIS_SOURCE_DIR}/lib/muparser_v134)
file(GLOB MUPARSER_SRC ${MUPARSER_SOURCE_DIR}/src/*.cpp)
list(APPEND AMDIS_INCLUDE_DIRS ${MUPARSER_SOURCE_DIR}/include)

#mtl4 includes
list(APPEND AMDIS_INCLUDE_DIRS ${MTL_INCLUDE_DIR})
#include_directories(${MTL_INCLUDE_DIR})
list(APPEND AMDIS_INCLUDE_DIRS ${SOURCE_DIR})
#include_directories(${SOURCE_DIR})
include_directories(${AMDIS_INCLUDE_DIRS})

add_library(amdis SHARED ${AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC})
add_library(compositeFEM SHARED ${COMPOSITE_FEM_SRC})
add_library(reinit SHARED ${REINIT_SRC})
add_library(muparser SHARED ${MUPARSER_SRC})
#target_link_libraries(compositeFEM amdis)
#target_link_libraries(reinit amdis)
list(APPEND AMDIS_LIBS amdis ${Boost_LIBRARIES})

if(WIN32)
	list(APPEND COMPILEFLAGS "-D_SCL_SECURE_NO_WARNINGS" "-D_CRT_SECURE_NO_WARNINGS")
endif(WIN32)
message("compileflags: ${COMPILEFLAGS}")
#SET_TARGET_PROPERTIES(amdis PROPERTIES COMPILE_FLAGS "${COMPILEFLAGS}")
add_definitions(${COMPILEFLAGS})

if(ENABLE_MARMOT)
	Message("please set marmotcc manually")
endif(ENABLE_MARMOT)

#dont change this destination. the GUI depends on it to guess the buildsystem

FILE(GLOB HEADERS "${SOURCE_DIR}/*.h")
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/)
list(APPEND deb_add_dirs "include/amdis")

FILE(GLOB HEADERS "${SOURCE_DIR}/*.hh")
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/)

FILE(GLOB HEADERS "${SOURCE_DIR}/parallel/*.h")
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/parallel/)
list(APPEND deb_add_dirs "include/amdis/parallel")

FILE(GLOB HEADERS "${SOURCE_DIR}/time/*.h")
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/time/)
list(APPEND deb_add_dirs "include/amdis/time")

FILE(GLOB HEADERS "${SOURCE_DIR}/itl/*.hpp")
INSTALL(FILES ${HEADERS} 
	DESTINATION include/amdis/itl)
list(APPEND deb_add_dirs "include/amdis/itl")

FILE(GLOB HEADERS "${SOURCE_DIR}/io/*.h")
INSTALL(FILES ${HEADERS}
	DESTINATION include/amdis/io)
list(APPEND deb_add_dirs "include/amdis/io")

FILE(GLOB HEADERS "${SOURCE_DIR}/io/*.hh")
INSTALL(FILES ${HEADERS}
	DESTINATION include/amdis/io)

FILE(GLOB HEADERS "${REINIT_SOURCE_DIR}/*.h")
INSTALL(FILES ${HEADERS}
	DESTINATION include/amdis/reinit)
list(APPEND deb_add_dirs "include/amdis/reinit")

FILE(GLOB HEADERS "${COMPOSITE_SOURCE_DIR}/*.h")
INSTALL(FILES ${HEADERS}
	DESTINATION include/amdis/compositeFEM)
list(APPEND deb_add_dirs "include/amdis/compositeFEM")

FILE(GLOB HEADERS "${MUPARSER_SOURCE_DIR}/include/*.h")
INSTALL(FILES ${HEADERS}
	DESTINATION include/amdis/muparser)
list(APPEND deb_add_dirs "include/amdis/muparser")

list(APPEND deb_add_dirs "lib/amdis")
install(TARGETS amdis compositeFEM reinit muparser
	LIBRARY DESTINATION lib/amdis/ )

configure_file(${AMDIS_SOURCE_DIR}/AMDISConfig.cmake.in
		${AMDIS_BINARY_DIR}/AMDISConfig.cmake
		@ONLY
	      )

INSTALL(FILES ${AMDIS_BINARY_DIR}/AMDISConfig.cmake 
	DESTINATION share/amdis/)
list(APPEND deb_add_dirs "share/amdis/")

INSTALL(FILES ${AMDIS_SOURCE_DIR}/AMDISUse.cmake 
	DESTINATION share/amdis/)

#install mtl
INSTALL(DIRECTORY ${AMDIS_SOURCE_DIR}/lib/mtl4/
	DESTINATION include/amdis/mtl4/
	FILES_MATCHING PATTERN "*.hpp"
	PATTERN ".svn" EXCLUDE
	PATTERN ".svn/*" EXCLUDE
	PATTERN "mtl4/libs" EXCLUDE
	PATTERN "mtl4/extern" EXCLUDE
       )
FILE(GLOB_RECURSE mtl4_files 
		RELATIVE ${AMDIS_SOURCE_DIR}/lib/mtl4/boost/ 
		${AMDIS_SOURCE_DIR}/lib/mtl4/boost/*.hpp)
foreach(mtl4_file in ${mtl4_files})
 get_filename_component(mtl4File_path ${mtl4_file} PATH)
 list(APPEND deb_add_dirs "include/amdis/mtl4/boost/${mtl4File_path}")
endforeach(mtl4_file)
list(REMOVE_DUPLICATES deb_add_dirs)

#PACKAGES
set(CPACK_PACKAGE_NAME "AMDIS")
set(CPACK_PACKAGE_CONTACT "Andreas.Naumann@tu-dresden.de")
set(CPACK_PACKAGE_VERSION "${CurrentRevision}")
set(CPACK_GENERATOR "RPM" "DEB" "TGZ")
set(CPACK_INSTALL_PREFIX "/usr/")

configure_file(${AMDIS_SOURCE_DIR}/preinst.in 
  ${AMDIS_BINARY_DIR}/preinst 
  @ONLY)

configure_file(${AMDIS_SOURCE_DIR}/postrm.in 
  ${AMDIS_BINARY_DIR}/postrm 
  @ONLY)
set(CPACK_RPM_PACKAGE_REQUIRES "boost-devel >= 1.42, ${RPM_DEPEND_STR}")
set(CPACK_DEBIAN_PACKAGE_DEPENDS "libboost-dev (>= 1.42), libboost-iostreams-dev (>= 1.42), libboost-system-dev (>= 1.42), libboost-filesystem-dev (>= 1.42)")
set(CPACK_DEBIAN_PACKAGE_CONTROL_EXTRA "${AMDIS_BINARY_DIR}/preinst" "${AMDIS_BINARY_DIR}/postrm")

include(CPack)