From 1829f40571341a077a74b5836b23c201b97a4652 Mon Sep 17 00:00:00 2001
From: Thomas Witkowski <thomas.witkowski@gmx.de>
Date: Thu, 17 Mar 2011 13:08:40 +0000
Subject: [PATCH] Deleted not used files. Moved compisteFEM to src directory.
Work on Makefiles.
---
AMDiS/src/ElInfo.h | 2 +-
AMDiS/src/Makefile.am | 223 +--
AMDiS/src/Makefile.in | 1527 +++++++++--------
AMDiS/src/MpCCIAdapter.cc | 576 -------
AMDiS/src/MpCCIAdapter.h | 110 --
AMDiS/src/PardisoSolver.cc | 223 ---
AMDiS/src/PardisoSolver.h | 113 --
AMDiS/src/PardisoSolver.hh | 27 -
AMDiS/src/QPInfo.cc | 103 +-
AMDiS/src/QPInfo.h | 135 +-
AMDiS/src/SMIAdapter.cc | 676 --------
AMDiS/src/SMIAdapter.h | 133 --
.../compositeFEM}/CFE_Integration.cc | 0
.../compositeFEM}/CFE_Integration.h | 0
.../compositeFEM}/CFE_NormAndErrorFcts.cc | 0
.../compositeFEM}/CFE_NormAndErrorFcts.h | 0
.../compositeFEM}/CompositeFEMMethods.cc | 0
.../compositeFEM}/CompositeFEMMethods.h | 0
.../compositeFEM}/CompositeFEMOperator.cc | 0
.../compositeFEM}/CompositeFEMOperator.h | 0
.../compositeFEM}/ElementLevelSet.cc | 0
.../compositeFEM}/ElementLevelSet.h | 0
.../compositeFEM}/LevelSetAdaptMesh.cc | 0
.../compositeFEM}/LevelSetAdaptMesh.h | 0
.../compositeFEM}/PenaltyOperator.cc | 0
.../compositeFEM}/PenaltyOperator.h | 0
.../compositeFEM}/SubElementAssembler.cc | 0
.../compositeFEM}/SubElementAssembler.h | 0
.../src => src/compositeFEM}/SubPolytope.cc | 0
.../src => src/compositeFEM}/SubPolytope.h | 0
.../src => src/compositeFEM}/TranslateLsFct.h | 0
.../src => src/compositeFEM}/compositeFEM.h | 0
32 files changed, 998 insertions(+), 2850 deletions(-)
delete mode 100644 AMDiS/src/MpCCIAdapter.cc
delete mode 100644 AMDiS/src/MpCCIAdapter.h
delete mode 100644 AMDiS/src/PardisoSolver.cc
delete mode 100644 AMDiS/src/PardisoSolver.h
delete mode 100644 AMDiS/src/PardisoSolver.hh
delete mode 100644 AMDiS/src/SMIAdapter.cc
delete mode 100644 AMDiS/src/SMIAdapter.h
rename AMDiS/{compositeFEM/src => src/compositeFEM}/CFE_Integration.cc (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/CFE_Integration.h (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/CFE_NormAndErrorFcts.cc (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/CFE_NormAndErrorFcts.h (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/CompositeFEMMethods.cc (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/CompositeFEMMethods.h (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/CompositeFEMOperator.cc (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/CompositeFEMOperator.h (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/ElementLevelSet.cc (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/ElementLevelSet.h (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/LevelSetAdaptMesh.cc (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/LevelSetAdaptMesh.h (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/PenaltyOperator.cc (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/PenaltyOperator.h (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/SubElementAssembler.cc (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/SubElementAssembler.h (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/SubPolytope.cc (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/SubPolytope.h (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/TranslateLsFct.h (100%)
rename AMDiS/{compositeFEM/src => src/compositeFEM}/compositeFEM.h (100%)
diff --git a/AMDiS/src/ElInfo.h b/AMDiS/src/ElInfo.h
index a811dcda..f2a44cbe 100644
--- a/AMDiS/src/ElInfo.h
+++ b/AMDiS/src/ElInfo.h
@@ -230,7 +230,7 @@ namespace AMDiS {
}
/// Returns \ref parametric
- inline bool getParametric()
+ inline bool getParametric() const
{
return parametric;
}
diff --git a/AMDiS/src/Makefile.am b/AMDiS/src/Makefile.am
index 05316b60..6596db1e 100644
--- a/AMDiS/src/Makefile.am
+++ b/AMDiS/src/Makefile.am
@@ -2,10 +2,8 @@ lib_LTLIBRARIES = libamdis.la libcompositeFEM.la
LIB_DIR = ../lib
PARALLEL_DIR = $(SOURCE_DIR)
-
PARMETIS_DIR = ../lib/ParMetis-3.1
-
-AMDIS_INCLUDES = -I$(SOURCE_DIR)
+AMDIS_INCLUDES =
libamdis_la_CXXFLAGS =
@@ -14,18 +12,17 @@ PARALLEL_INCLUDES =
if USE_PARALLEL_DOMAIN_AMDIS
PARALLEL_AMDIS_SOURCES += \
- parallel/StdMpi.h parallel/StdMpi.cc \
- parallel/ParMetisPartitioner.h parallel/ParMetisPartitioner.cc \
- parallel/ZoltanPartitioner.h parallel/ZoltanPartitioner.cc \
- parallel/MeshDistributor.h parallel/MeshDistributor.cc \
- parallel/MeshPartitioner.h parallel/MeshPartitioner.cc \
- parallel/MeshManipulation.h parallel/MeshManipulation.cc \
- parallel/ParallelDebug.h parallel/ParallelDebug.cc \
- parallel/ParallelProblemStatBase.h \
+ parallel/ElementObjectData.cc \
+ parallel/MeshDistributor.cc \
+ parallel/MeshManipulation.cc \
+ parallel/MeshPartitioner.cc \
+ parallel/MpiHelper.cc \
+ parallel/ParallelDebug.cc \
parallel/ParallelProblemStatBase.cc \
- parallel/PetscSolver.h parallel/PetscSolver.cc \
- parallel/MpiHelper.h parallel/MpiHelper.cc \
- parallel/ElementObjectData.h parallel/ElementObjectData.cc
+ parallel/ParMetisPartitioner.cc \
+ parallel/PetscSolver.cc \
+ parallel/StdMpi.cc \
+ parallel/ZoltanPartitioner.cc
libamdis_la_CXXFLAGS += -DHAVE_PARALLEL_DOMAIN_AMDIS=1
AMDIS_INCLUDES += -I$(PARMETIS_DIR)
AMDIS_INCLUDES += -I$(PETSC_DIR)/include -I$(PETSC_DIR)/$(PETSC_ARCH)/include
@@ -136,7 +133,6 @@ MatrixVector.h \
Mesh.h \
MeshStructure.h \
MeshStructure_ED.h \
-MpCCIAdapter.h \
Newton.h \
Newton.hh \
NewtonS.h \
@@ -152,8 +148,6 @@ OperatorTerm.h \
OperatorTerm.hh \
Parameters.h \
Parametric.h \
-PardisoSolver.h \
-PardisoSolver.hh \
PeriodicBC.h \
PeriodicConnection.h \
PeriodicInfo.h \
@@ -185,7 +179,6 @@ ResidualEstimator.h \
ResidualParallelEstimator.h \
RobinBC.h \
RobinBC.hh \
-SMIAdapter.h \
ScalableQuadrature.h \
SecondOrderAssembler.h \
SecondOrderTerm.h \
@@ -214,6 +207,17 @@ VertexInfo.h \
VertexVector.h \
ZeroOrderAssembler.h \
ZeroOrderTerm.h \
+compositeFEM/CFE_Integration.h \
+compositeFEM/CFE_NormAndErrorFcts.h \
+compositeFEM/CompositeFEMMethods.h \
+compositeFEM/CompositeFEMOperator.h \
+compositeFEM/ElementLevelSet.h \
+compositeFEM/LevelSetAdaptMesh.h \
+compositeFEM/PenaltyOperator.h \
+compositeFEM/SubElementAssembler.h \
+compositeFEM/SubPolytope.h \
+compositeFEM/TranslateLsFct.h \
+compositeFEM/compositeFEM.h \
io/ArhReader.h \
io/ArhWriter.h \
io/DataCollector.h \
@@ -228,141 +232,148 @@ io/MacroReader.h \
io/MacroWriter.h \
io/PngWriter.h \
io/PovrayWriter.h \
-io/ValueReader.h \
+io/ValueReader.h \
io/ValueWriter.h \
io/VtkWriter.h \
io/VtkWriter.hh \
+itl/minres.hpp \
+parallel/ElementObjectData.h \
parallel/InteriorBoundary.h \
+parallel/MeshDistributor.h \
+parallel/MeshManipulation.h \
+parallel/MeshPartitioner.h \
+parallel/MpiHelper.h \
+parallel/ParallelDebug.h \
+parallel/ParallelProblemStatBase.h \
+parallel/ParMetisPartitioner.h \
+parallel/PetscSolver.h \
+parallel/StdMpi.h \
+parallel/ZoltanPartitioner.h \
time/RosenbrockAdaptInstationary.h \
time/RosenbrockStationary.h \
time/RosenbrockMethod.h
libamdis_la_SOURCES = \
$(PARALLEL_AMDIS_SOURCES) \
-DOFIndexed.cc \
-io/GNUPlotWriter.cc \
-VertexVector.cc \
-PeriodicBC.cc \
-Recovery.cc \
-RecoveryEstimator.cc \
-ResidualEstimator.cc \
-Cholesky.cc \
AdaptBase.cc \
-StandardProblemIteration.cc \
-ProblemScal.cc \
-ProblemVec.cc \
-ProblemVecDbg.cc \
-DualTraverse.cc \
-ElementData.cc \
-ComponentTraverseInfo.cc \
-CreatorMap.cc \
-ProblemInterpolScal.cc \
-ProblemInterpolVec.cc \
-Serializer.cc \
-io/MacroInfo.cc \
-io/MacroReader.cc \
-io/ValueReader.cc \
-Projection.cc \
-SubAssembler.cc \
-ZeroOrderAssembler.cc \
-FirstOrderAssembler.cc \
-SecondOrderAssembler.cc \
-Assembler.cc \
AdaptInfo.cc \
-Marker.cc \
-SurfaceQuadrature.cc \
-LeafData.cc \
-BoundaryManager.cc \
-DirichletBC.cc \
-RobinBC.cc \
-io/FileWriter.cc \
-io/ElementFileWriter.cc \
-ElInfo.cc \
-ElInfoStack.cc \
-OperatorTerm.cc \
-ZeroOrderTerm.cc \
-FirstOrderTerm.cc \
-SecondOrderTerm.cc \
-Operator.cc \
-Mesh.cc \
-MeshStructure.cc \
-AdaptStationary.cc \
AdaptInstationary.cc \
-DOFVector.cc \
-Estimator.cc \
-ProblemInstat.cc \
-ProblemNonLin.cc \
-NonLinUpdater.cc \
-QPsiPhi.cc \
+AdaptStationary.cc \
+Assembler.cc \
BasisFunction.cc \
Boundary.cc \
+BoundaryManager.cc \
+Cholesky.cc \
CoarseningManager.cc \
CoarseningManager1d.cc \
CoarseningManager2d.cc \
CoarseningManager3d.cc \
+ComponentTraverseInfo.cc \
+CreatorMap.cc \
DOFAdmin.cc \
+DOFIndexed.cc \
DOFMatrix.cc \
-Element.cc \
+DOFVector.cc \
+Debug.cc \
+DirichletBC.cc \
+DualTraverse.cc \
+ElInfo.cc \
ElInfo1d.cc \
ElInfo2d.cc \
ElInfo3d.cc \
+ElInfoStack.cc \
+Element.cc \
+ElementData.cc \
+ElementDofIterator.cc \
+Estimator.cc \
FiniteElemSpace.cc \
+FirstOrderAssembler.cc \
+FirstOrderTerm.cc \
FixVec.cc \
Global.cc \
+GlobalDOFNumbering.cc \
+GlobalElementNumbering.cc \
Lagrange.cc \
+LeafData.cc \
Line.cc \
MacroElement.cc \
-io/MacroWriter.cc \
+Marker.cc \
+Mesh.cc \
+MeshStructure.cc \
+NonLinUpdater.cc \
+Operator.cc \
+OperatorTerm.cc \
Parameters.cc \
Parametric.cc \
+PeriodicBC.cc \
+ProblemImplicit.cc \
+ProblemInstat.cc \
+ProblemInterpolScal.cc \
+ProblemInterpolVec.cc \
+ProblemNonLin.cc \
+ProblemScal.cc \
+ProblemVec.cc \
+ProblemVecDbg.cc \
+Projection.cc \
+QPInfo.cc \
+QPsiPhi.cc \
Quadrature.cc \
RCNeighbourList.cc \
+Recovery.cc \
+RecoveryEstimator.cc \
RefinementManager.cc \
RefinementManager1d.cc \
RefinementManager2d.cc \
RefinementManager3d.cc \
+ResidualEstimator.cc \
+ResidualParallelEstimator.cc \
+RobinBC.cc \
+ScalableQuadrature.cc \
+SecondOrderAssembler.cc \
+SecondOrderTerm.cc \
+Serializer.cc \
+StandardProblemIteration.cc \
+SubAssembler.cc \
+SubElInfo.cc \
+SubQuadrature.cc \
+SurfaceQuadrature.cc \
Tetrahedron.cc \
Traverse.cc \
TraverseParallel.cc \
Triangle.cc \
-io/ValueWriter.cc \
-io/VtkWriter.cc \
+VertexVector.cc \
+ZeroOrderAssembler.cc \
+ZeroOrderTerm.cc \
+io/ArhReader.cc \
+io/ArhWriter.cc \
+io/DataCollector.cc \
io/DofWriter.cc \
+io/ElementFileWriter.cc \
+io/FileWriter.cc \
+io/GNUPlotWriter.cc \
+io/MacroInfo.cc \
+io/MacroReader.cc \
+io/MacroWriter.cc \
io/PngWriter.cc \
io/PovrayWriter.cc \
-io/DataCollector.cc \
-ScalableQuadrature.cc \
-SubElInfo.cc \
-ElementDofIterator.cc \
-parallel/InteriorBoundary.cc \
-Debug.cc \
-io/ArhReader.cc \
-io/ArhWriter.cc \
+io/ValueReader.cc \
+io/ValueWriter.cc \
+io/VtkWriter.cc \
time/RosenbrockAdaptInstationary.cc \
-time/RosenbrockStationary.cc \
-time/RosenbrockMethod.cc
-
-COMPOSITE_SOURCE_DIR = ../compositeFEM/src
+time/RosenbrockMethod.cc \
+time/RosenbrockStationary.cc
-libcompositeFEM_la_CXXFLAGS = $(libamdis_la_CXXFLAGS)
-libcompositeFEM_la_SOURCES = $(COMPOSITE_SOURCE_DIR)/CFE_Integration.h \
-$(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc \
-$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.h \
-$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.cc \
-$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.h \
-$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.cc \
-$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.h \
-$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.cc \
-$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.h \
-$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.cc \
-$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.h \
-$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.cc \
-$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.h \
-$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.cc \
-$(COMPOSITE_SOURCE_DIR)/SubPolytope.h $(COMPOSITE_SOURCE_DIR)/SubPolytope.cc \
-$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.h \
-$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.cc \
-$(COMPOSITE_SOURCE_DIR)/TranslateLsFct.h
+libcompositeFEM_la_CXXFLAGS = $(libamdis_la_CXXFLAGS)
+libcompositeFEM_la_SOURCES = \
+compositeFEM/CFE_Integration.cc \
+compositeFEM/CFE_NormAndErrorFcts.cc \
+compositeFEM/CompositeFEMMethods.cc \
+compositeFEM/CompositeFEMOperator.cc \
+compositeFEM/ElementLevelSet.cc \
+compositeFEM/LevelSetAdaptMesh.cc \
+compositeFEM/PenaltyOperator.cc \
+compositeFEM/SubElementAssembler.cc \
+compositeFEM/SubPolytope.cc
diff --git a/AMDiS/src/Makefile.in b/AMDiS/src/Makefile.in
index 31009b58..f09b96de 100644
--- a/AMDiS/src/Makefile.in
+++ b/AMDiS/src/Makefile.in
@@ -38,18 +38,17 @@ POST_UNINSTALL = :
build_triplet = @build@
host_triplet = @host@
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@am__append_1 = \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/StdMpi.h parallel/StdMpi.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/ParMetisPartitioner.h parallel/ParMetisPartitioner.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/ZoltanPartitioner.h parallel/ZoltanPartitioner.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/MeshDistributor.h parallel/MeshDistributor.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/MeshPartitioner.h parallel/MeshPartitioner.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/MeshManipulation.h parallel/MeshManipulation.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/ParallelDebug.h parallel/ParallelDebug.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/ParallelProblemStatBase.h \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/ElementObjectData.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/MeshDistributor.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/MeshManipulation.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/MeshPartitioner.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/MpiHelper.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/ParallelDebug.cc \
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/ParallelProblemStatBase.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/PetscSolver.h parallel/PetscSolver.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/MpiHelper.h parallel/MpiHelper.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/ElementObjectData.h parallel/ElementObjectData.cc
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/ParMetisPartitioner.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/PetscSolver.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/StdMpi.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ parallel/ZoltanPartitioner.cc
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@am__append_2 = -DHAVE_PARALLEL_DOMAIN_AMDIS=1
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@am__append_3 = -I$(PARMETIS_DIR) \
@@ -86,132 +85,133 @@ am__installdirs = "$(DESTDIR)$(libdir)" "$(DESTDIR)$(includedir)"
libLTLIBRARIES_INSTALL = $(INSTALL)
LTLIBRARIES = $(lib_LTLIBRARIES)
libamdis_la_LIBADD =
-am__libamdis_la_SOURCES_DIST = parallel/StdMpi.h parallel/StdMpi.cc \
- parallel/ParMetisPartitioner.h parallel/ParMetisPartitioner.cc \
- parallel/ZoltanPartitioner.h parallel/ZoltanPartitioner.cc \
- parallel/MeshDistributor.h parallel/MeshDistributor.cc \
- parallel/MeshPartitioner.h parallel/MeshPartitioner.cc \
- parallel/MeshManipulation.h parallel/MeshManipulation.cc \
- parallel/ParallelDebug.h parallel/ParallelDebug.cc \
- parallel/ParallelProblemStatBase.h \
- parallel/ParallelProblemStatBase.cc parallel/PetscSolver.h \
- parallel/PetscSolver.cc parallel/MpiHelper.h \
- parallel/MpiHelper.cc parallel/ElementObjectData.h \
- parallel/ElementObjectData.cc DOFIndexed.cc \
- io/GNUPlotWriter.cc VertexVector.cc PeriodicBC.cc Recovery.cc \
- RecoveryEstimator.cc ResidualEstimator.cc Cholesky.cc \
- AdaptBase.cc StandardProblemIteration.cc ProblemScal.cc \
- ProblemVec.cc ProblemVecDbg.cc DualTraverse.cc ElementData.cc \
- ComponentTraverseInfo.cc CreatorMap.cc ProblemInterpolScal.cc \
- ProblemInterpolVec.cc Serializer.cc io/MacroInfo.cc \
- io/MacroReader.cc io/ValueReader.cc Projection.cc \
- SubAssembler.cc ZeroOrderAssembler.cc FirstOrderAssembler.cc \
- SecondOrderAssembler.cc Assembler.cc AdaptInfo.cc Marker.cc \
- SurfaceQuadrature.cc LeafData.cc BoundaryManager.cc \
- DirichletBC.cc RobinBC.cc io/FileWriter.cc \
- io/ElementFileWriter.cc ElInfo.cc ElInfoStack.cc \
- OperatorTerm.cc ZeroOrderTerm.cc FirstOrderTerm.cc \
- SecondOrderTerm.cc Operator.cc Mesh.cc MeshStructure.cc \
- AdaptStationary.cc AdaptInstationary.cc DOFVector.cc \
- Estimator.cc ProblemInstat.cc ProblemNonLin.cc \
- NonLinUpdater.cc QPsiPhi.cc BasisFunction.cc Boundary.cc \
- CoarseningManager.cc CoarseningManager1d.cc \
- CoarseningManager2d.cc CoarseningManager3d.cc DOFAdmin.cc \
- DOFMatrix.cc Element.cc ElInfo1d.cc ElInfo2d.cc ElInfo3d.cc \
- FiniteElemSpace.cc FixVec.cc Global.cc Lagrange.cc Line.cc \
- MacroElement.cc io/MacroWriter.cc Parameters.cc Parametric.cc \
- Quadrature.cc RCNeighbourList.cc RefinementManager.cc \
- RefinementManager1d.cc RefinementManager2d.cc \
- RefinementManager3d.cc Tetrahedron.cc Traverse.cc \
- TraverseParallel.cc Triangle.cc io/ValueWriter.cc \
- io/VtkWriter.cc io/DofWriter.cc io/PngWriter.cc \
- io/PovrayWriter.cc io/DataCollector.cc ScalableQuadrature.cc \
- SubElInfo.cc ElementDofIterator.cc \
- parallel/InteriorBoundary.cc Debug.cc io/ArhReader.cc \
- io/ArhWriter.cc time/RosenbrockAdaptInstationary.cc \
- time/RosenbrockStationary.cc time/RosenbrockMethod.cc
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@am__objects_1 = libamdis_la-StdMpi.lo \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-ParMetisPartitioner.lo \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-ZoltanPartitioner.lo \
+am__libamdis_la_SOURCES_DIST = parallel/ElementObjectData.cc \
+ parallel/MeshDistributor.cc parallel/MeshManipulation.cc \
+ parallel/MeshPartitioner.cc parallel/MpiHelper.cc \
+ parallel/ParallelDebug.cc parallel/ParallelProblemStatBase.cc \
+ parallel/ParMetisPartitioner.cc parallel/PetscSolver.cc \
+ parallel/StdMpi.cc parallel/ZoltanPartitioner.cc AdaptBase.cc \
+ AdaptInfo.cc AdaptInstationary.cc AdaptStationary.cc \
+ Assembler.cc BasisFunction.cc Boundary.cc BoundaryManager.cc \
+ Cholesky.cc CoarseningManager.cc CoarseningManager1d.cc \
+ CoarseningManager2d.cc CoarseningManager3d.cc \
+ ComponentTraverseInfo.cc CreatorMap.cc DOFAdmin.cc \
+ DOFIndexed.cc DOFMatrix.cc DOFVector.cc Debug.cc \
+ DirichletBC.cc DualTraverse.cc ElInfo.cc ElInfo1d.cc \
+ ElInfo2d.cc ElInfo3d.cc ElInfoStack.cc Element.cc \
+ ElementData.cc ElementDofIterator.cc Estimator.cc \
+ FiniteElemSpace.cc FirstOrderAssembler.cc FirstOrderTerm.cc \
+ FixVec.cc Global.cc GlobalDOFNumbering.cc \
+ GlobalElementNumbering.cc Lagrange.cc LeafData.cc Line.cc \
+ MacroElement.cc Marker.cc Mesh.cc MeshStructure.cc \
+ NonLinUpdater.cc Operator.cc OperatorTerm.cc Parameters.cc \
+ Parametric.cc PeriodicBC.cc ProblemImplicit.cc \
+ ProblemInstat.cc ProblemInterpolScal.cc ProblemInterpolVec.cc \
+ ProblemNonLin.cc ProblemScal.cc ProblemVec.cc ProblemVecDbg.cc \
+ Projection.cc QPInfo.cc QPsiPhi.cc Quadrature.cc \
+ RCNeighbourList.cc Recovery.cc RecoveryEstimator.cc \
+ RefinementManager.cc RefinementManager1d.cc \
+ RefinementManager2d.cc RefinementManager3d.cc \
+ ResidualEstimator.cc ResidualParallelEstimator.cc RobinBC.cc \
+ ScalableQuadrature.cc SecondOrderAssembler.cc \
+ SecondOrderTerm.cc Serializer.cc StandardProblemIteration.cc \
+ SubAssembler.cc SubElInfo.cc SubQuadrature.cc \
+ SurfaceQuadrature.cc Tetrahedron.cc Traverse.cc \
+ TraverseParallel.cc Triangle.cc VertexVector.cc \
+ ZeroOrderAssembler.cc ZeroOrderTerm.cc io/ArhReader.cc \
+ io/ArhWriter.cc io/DataCollector.cc io/DofWriter.cc \
+ io/ElementFileWriter.cc io/FileWriter.cc io/GNUPlotWriter.cc \
+ io/MacroInfo.cc io/MacroReader.cc io/MacroWriter.cc \
+ io/PngWriter.cc io/PovrayWriter.cc io/ValueReader.cc \
+ io/ValueWriter.cc io/VtkWriter.cc \
+ time/RosenbrockAdaptInstationary.cc time/RosenbrockMethod.cc \
+ time/RosenbrockStationary.cc
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@am__objects_1 = libamdis_la-ElementObjectData.lo \
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-MeshDistributor.lo \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-MeshPartitioner.lo \
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-MeshManipulation.lo \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-MeshPartitioner.lo \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-MpiHelper.lo \
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-ParallelDebug.lo \
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-ParallelProblemStatBase.lo \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-ParMetisPartitioner.lo \
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-PetscSolver.lo \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-MpiHelper.lo \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-ElementObjectData.lo
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-StdMpi.lo \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-ZoltanPartitioner.lo
am__objects_2 = $(am__objects_1)
-am_libamdis_la_OBJECTS = $(am__objects_2) libamdis_la-DOFIndexed.lo \
- libamdis_la-GNUPlotWriter.lo libamdis_la-VertexVector.lo \
- libamdis_la-PeriodicBC.lo libamdis_la-Recovery.lo \
- libamdis_la-RecoveryEstimator.lo \
- libamdis_la-ResidualEstimator.lo libamdis_la-Cholesky.lo \
- libamdis_la-AdaptBase.lo \
- libamdis_la-StandardProblemIteration.lo \
- libamdis_la-ProblemScal.lo libamdis_la-ProblemVec.lo \
- libamdis_la-ProblemVecDbg.lo libamdis_la-DualTraverse.lo \
- libamdis_la-ElementData.lo \
- libamdis_la-ComponentTraverseInfo.lo libamdis_la-CreatorMap.lo \
- libamdis_la-ProblemInterpolScal.lo \
- libamdis_la-ProblemInterpolVec.lo libamdis_la-Serializer.lo \
- libamdis_la-MacroInfo.lo libamdis_la-MacroReader.lo \
- libamdis_la-ValueReader.lo libamdis_la-Projection.lo \
- libamdis_la-SubAssembler.lo libamdis_la-ZeroOrderAssembler.lo \
- libamdis_la-FirstOrderAssembler.lo \
- libamdis_la-SecondOrderAssembler.lo libamdis_la-Assembler.lo \
- libamdis_la-AdaptInfo.lo libamdis_la-Marker.lo \
- libamdis_la-SurfaceQuadrature.lo libamdis_la-LeafData.lo \
- libamdis_la-BoundaryManager.lo libamdis_la-DirichletBC.lo \
- libamdis_la-RobinBC.lo libamdis_la-FileWriter.lo \
- libamdis_la-ElementFileWriter.lo libamdis_la-ElInfo.lo \
- libamdis_la-ElInfoStack.lo libamdis_la-OperatorTerm.lo \
- libamdis_la-ZeroOrderTerm.lo libamdis_la-FirstOrderTerm.lo \
- libamdis_la-SecondOrderTerm.lo libamdis_la-Operator.lo \
- libamdis_la-Mesh.lo libamdis_la-MeshStructure.lo \
- libamdis_la-AdaptStationary.lo \
- libamdis_la-AdaptInstationary.lo libamdis_la-DOFVector.lo \
- libamdis_la-Estimator.lo libamdis_la-ProblemInstat.lo \
- libamdis_la-ProblemNonLin.lo libamdis_la-NonLinUpdater.lo \
- libamdis_la-QPsiPhi.lo libamdis_la-BasisFunction.lo \
- libamdis_la-Boundary.lo libamdis_la-CoarseningManager.lo \
+am_libamdis_la_OBJECTS = $(am__objects_2) libamdis_la-AdaptBase.lo \
+ libamdis_la-AdaptInfo.lo libamdis_la-AdaptInstationary.lo \
+ libamdis_la-AdaptStationary.lo libamdis_la-Assembler.lo \
+ libamdis_la-BasisFunction.lo libamdis_la-Boundary.lo \
+ libamdis_la-BoundaryManager.lo libamdis_la-Cholesky.lo \
+ libamdis_la-CoarseningManager.lo \
libamdis_la-CoarseningManager1d.lo \
libamdis_la-CoarseningManager2d.lo \
- libamdis_la-CoarseningManager3d.lo libamdis_la-DOFAdmin.lo \
- libamdis_la-DOFMatrix.lo libamdis_la-Element.lo \
+ libamdis_la-CoarseningManager3d.lo \
+ libamdis_la-ComponentTraverseInfo.lo libamdis_la-CreatorMap.lo \
+ libamdis_la-DOFAdmin.lo libamdis_la-DOFIndexed.lo \
+ libamdis_la-DOFMatrix.lo libamdis_la-DOFVector.lo \
+ libamdis_la-Debug.lo libamdis_la-DirichletBC.lo \
+ libamdis_la-DualTraverse.lo libamdis_la-ElInfo.lo \
libamdis_la-ElInfo1d.lo libamdis_la-ElInfo2d.lo \
- libamdis_la-ElInfo3d.lo libamdis_la-FiniteElemSpace.lo \
- libamdis_la-FixVec.lo libamdis_la-Global.lo \
- libamdis_la-Lagrange.lo libamdis_la-Line.lo \
- libamdis_la-MacroElement.lo libamdis_la-MacroWriter.lo \
- libamdis_la-Parameters.lo libamdis_la-Parametric.lo \
+ libamdis_la-ElInfo3d.lo libamdis_la-ElInfoStack.lo \
+ libamdis_la-Element.lo libamdis_la-ElementData.lo \
+ libamdis_la-ElementDofIterator.lo libamdis_la-Estimator.lo \
+ libamdis_la-FiniteElemSpace.lo \
+ libamdis_la-FirstOrderAssembler.lo \
+ libamdis_la-FirstOrderTerm.lo libamdis_la-FixVec.lo \
+ libamdis_la-Global.lo libamdis_la-GlobalDOFNumbering.lo \
+ libamdis_la-GlobalElementNumbering.lo libamdis_la-Lagrange.lo \
+ libamdis_la-LeafData.lo libamdis_la-Line.lo \
+ libamdis_la-MacroElement.lo libamdis_la-Marker.lo \
+ libamdis_la-Mesh.lo libamdis_la-MeshStructure.lo \
+ libamdis_la-NonLinUpdater.lo libamdis_la-Operator.lo \
+ libamdis_la-OperatorTerm.lo libamdis_la-Parameters.lo \
+ libamdis_la-Parametric.lo libamdis_la-PeriodicBC.lo \
+ libamdis_la-ProblemImplicit.lo libamdis_la-ProblemInstat.lo \
+ libamdis_la-ProblemInterpolScal.lo \
+ libamdis_la-ProblemInterpolVec.lo libamdis_la-ProblemNonLin.lo \
+ libamdis_la-ProblemScal.lo libamdis_la-ProblemVec.lo \
+ libamdis_la-ProblemVecDbg.lo libamdis_la-Projection.lo \
+ libamdis_la-QPInfo.lo libamdis_la-QPsiPhi.lo \
libamdis_la-Quadrature.lo libamdis_la-RCNeighbourList.lo \
+ libamdis_la-Recovery.lo libamdis_la-RecoveryEstimator.lo \
libamdis_la-RefinementManager.lo \
libamdis_la-RefinementManager1d.lo \
libamdis_la-RefinementManager2d.lo \
- libamdis_la-RefinementManager3d.lo libamdis_la-Tetrahedron.lo \
- libamdis_la-Traverse.lo libamdis_la-TraverseParallel.lo \
- libamdis_la-Triangle.lo libamdis_la-ValueWriter.lo \
- libamdis_la-VtkWriter.lo libamdis_la-DofWriter.lo \
- libamdis_la-PngWriter.lo libamdis_la-PovrayWriter.lo \
- libamdis_la-DataCollector.lo libamdis_la-ScalableQuadrature.lo \
- libamdis_la-SubElInfo.lo libamdis_la-ElementDofIterator.lo \
- libamdis_la-InteriorBoundary.lo libamdis_la-Debug.lo \
- libamdis_la-ArhReader.lo libamdis_la-ArhWriter.lo \
+ libamdis_la-RefinementManager3d.lo \
+ libamdis_la-ResidualEstimator.lo \
+ libamdis_la-ResidualParallelEstimator.lo \
+ libamdis_la-RobinBC.lo libamdis_la-ScalableQuadrature.lo \
+ libamdis_la-SecondOrderAssembler.lo \
+ libamdis_la-SecondOrderTerm.lo libamdis_la-Serializer.lo \
+ libamdis_la-StandardProblemIteration.lo \
+ libamdis_la-SubAssembler.lo libamdis_la-SubElInfo.lo \
+ libamdis_la-SubQuadrature.lo libamdis_la-SurfaceQuadrature.lo \
+ libamdis_la-Tetrahedron.lo libamdis_la-Traverse.lo \
+ libamdis_la-TraverseParallel.lo libamdis_la-Triangle.lo \
+ libamdis_la-VertexVector.lo libamdis_la-ZeroOrderAssembler.lo \
+ libamdis_la-ZeroOrderTerm.lo libamdis_la-ArhReader.lo \
+ libamdis_la-ArhWriter.lo libamdis_la-DataCollector.lo \
+ libamdis_la-DofWriter.lo libamdis_la-ElementFileWriter.lo \
+ libamdis_la-FileWriter.lo libamdis_la-GNUPlotWriter.lo \
+ libamdis_la-MacroInfo.lo libamdis_la-MacroReader.lo \
+ libamdis_la-MacroWriter.lo libamdis_la-PngWriter.lo \
+ libamdis_la-PovrayWriter.lo libamdis_la-ValueReader.lo \
+ libamdis_la-ValueWriter.lo libamdis_la-VtkWriter.lo \
libamdis_la-RosenbrockAdaptInstationary.lo \
- libamdis_la-RosenbrockStationary.lo \
- libamdis_la-RosenbrockMethod.lo
+ libamdis_la-RosenbrockMethod.lo \
+ libamdis_la-RosenbrockStationary.lo
libamdis_la_OBJECTS = $(am_libamdis_la_OBJECTS)
libcompositeFEM_la_LIBADD =
am_libcompositeFEM_la_OBJECTS = libcompositeFEM_la-CFE_Integration.lo \
libcompositeFEM_la-CFE_NormAndErrorFcts.lo \
libcompositeFEM_la-CompositeFEMMethods.lo \
+ libcompositeFEM_la-CompositeFEMOperator.lo \
+ libcompositeFEM_la-ElementLevelSet.lo \
libcompositeFEM_la-LevelSetAdaptMesh.lo \
libcompositeFEM_la-PenaltyOperator.lo \
- libcompositeFEM_la-ElementLevelSet.lo \
- libcompositeFEM_la-CompositeFEMOperator.lo \
- libcompositeFEM_la-SubPolytope.lo \
- libcompositeFEM_la-SubElementAssembler.lo
+ libcompositeFEM_la-SubElementAssembler.lo \
+ libcompositeFEM_la-SubPolytope.lo
libcompositeFEM_la_OBJECTS = $(am_libcompositeFEM_la_OBJECTS)
DEFAULT_INCLUDES = -I. -I$(srcdir)
depcomp = $(SHELL) $(top_srcdir)/depcomp
@@ -224,14 +224,6 @@ LTCXXCOMPILE = $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) \
CXXLD = $(CXX)
CXXLINK = $(LIBTOOL) --tag=CXX --mode=link $(CXXLD) $(AM_CXXFLAGS) \
$(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
-COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
- $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
-LTCOMPILE = $(LIBTOOL) --tag=CC --mode=compile $(CC) $(DEFS) \
- $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \
- $(AM_CFLAGS) $(CFLAGS)
-CCLD = $(CC)
-LINK = $(LIBTOOL) --tag=CC --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
- $(AM_LDFLAGS) $(LDFLAGS) -o $@
SOURCES = $(libamdis_la_SOURCES) $(libcompositeFEM_la_SOURCES)
DIST_SOURCES = $(am__libamdis_la_SOURCES_DIST) \
$(libcompositeFEM_la_SOURCES)
@@ -451,7 +443,6 @@ MatrixVector.h \
Mesh.h \
MeshStructure.h \
MeshStructure_ED.h \
-MpCCIAdapter.h \
Newton.h \
Newton.hh \
NewtonS.h \
@@ -467,8 +458,6 @@ OperatorTerm.h \
OperatorTerm.hh \
Parameters.h \
Parametric.h \
-PardisoSolver.h \
-PardisoSolver.hh \
PeriodicBC.h \
PeriodicConnection.h \
PeriodicInfo.h \
@@ -500,7 +489,6 @@ ResidualEstimator.h \
ResidualParallelEstimator.h \
RobinBC.h \
RobinBC.hh \
-SMIAdapter.h \
ScalableQuadrature.h \
SecondOrderAssembler.h \
SecondOrderTerm.h \
@@ -529,6 +517,17 @@ VertexInfo.h \
VertexVector.h \
ZeroOrderAssembler.h \
ZeroOrderTerm.h \
+compositeFEM/CFE_Integration.h \
+compositeFEM/CFE_NormAndErrorFcts.h \
+compositeFEM/CompositeFEMMethods.h \
+compositeFEM/CompositeFEMOperator.h \
+compositeFEM/ElementLevelSet.h \
+compositeFEM/LevelSetAdaptMesh.h \
+compositeFEM/PenaltyOperator.h \
+compositeFEM/SubElementAssembler.h \
+compositeFEM/SubPolytope.h \
+compositeFEM/TranslateLsFct.h \
+compositeFEM/compositeFEM.h \
io/ArhReader.h \
io/ArhWriter.h \
io/DataCollector.h \
@@ -547,136 +546,144 @@ io/ValueReader.h \
io/ValueWriter.h \
io/VtkWriter.h \
io/VtkWriter.hh \
+itl/minres.hpp \
+parallel/ElementObjectData.h \
parallel/InteriorBoundary.h \
+parallel/MeshDistributor.h \
+parallel/MeshManipulation.h \
+parallel/MeshPartitioner.h \
+parallel/MpiHelper.h \
+parallel/ParallelDebug.h \
+parallel/ParallelProblemStatBase.h \
+parallel/ParMetisPartitioner.h \
+parallel/PetscSolver.h \
+parallel/StdMpi.h \
+parallel/ZoltanPartitioner.h \
time/RosenbrockAdaptInstationary.h \
time/RosenbrockStationary.h \
time/RosenbrockMethod.h
libamdis_la_SOURCES = \
$(PARALLEL_AMDIS_SOURCES) \
-DOFIndexed.cc \
-io/GNUPlotWriter.cc \
-VertexVector.cc \
-PeriodicBC.cc \
-Recovery.cc \
-RecoveryEstimator.cc \
-ResidualEstimator.cc \
-Cholesky.cc \
AdaptBase.cc \
-StandardProblemIteration.cc \
-ProblemScal.cc \
-ProblemVec.cc \
-ProblemVecDbg.cc \
-DualTraverse.cc \
-ElementData.cc \
-ComponentTraverseInfo.cc \
-CreatorMap.cc \
-ProblemInterpolScal.cc \
-ProblemInterpolVec.cc \
-Serializer.cc \
-io/MacroInfo.cc \
-io/MacroReader.cc \
-io/ValueReader.cc \
-Projection.cc \
-SubAssembler.cc \
-ZeroOrderAssembler.cc \
-FirstOrderAssembler.cc \
-SecondOrderAssembler.cc \
-Assembler.cc \
AdaptInfo.cc \
-Marker.cc \
-SurfaceQuadrature.cc \
-LeafData.cc \
-BoundaryManager.cc \
-DirichletBC.cc \
-RobinBC.cc \
-io/FileWriter.cc \
-io/ElementFileWriter.cc \
-ElInfo.cc \
-ElInfoStack.cc \
-OperatorTerm.cc \
-ZeroOrderTerm.cc \
-FirstOrderTerm.cc \
-SecondOrderTerm.cc \
-Operator.cc \
-Mesh.cc \
-MeshStructure.cc \
-AdaptStationary.cc \
AdaptInstationary.cc \
-DOFVector.cc \
-Estimator.cc \
-ProblemInstat.cc \
-ProblemNonLin.cc \
-NonLinUpdater.cc \
-QPsiPhi.cc \
+AdaptStationary.cc \
+Assembler.cc \
BasisFunction.cc \
Boundary.cc \
+BoundaryManager.cc \
+Cholesky.cc \
CoarseningManager.cc \
CoarseningManager1d.cc \
CoarseningManager2d.cc \
CoarseningManager3d.cc \
+ComponentTraverseInfo.cc \
+CreatorMap.cc \
DOFAdmin.cc \
+DOFIndexed.cc \
DOFMatrix.cc \
-Element.cc \
+DOFVector.cc \
+Debug.cc \
+DirichletBC.cc \
+DualTraverse.cc \
+ElInfo.cc \
ElInfo1d.cc \
ElInfo2d.cc \
ElInfo3d.cc \
+ElInfoStack.cc \
+Element.cc \
+ElementData.cc \
+ElementDofIterator.cc \
+Estimator.cc \
FiniteElemSpace.cc \
+FirstOrderAssembler.cc \
+FirstOrderTerm.cc \
FixVec.cc \
Global.cc \
+GlobalDOFNumbering.cc \
+GlobalElementNumbering.cc \
Lagrange.cc \
+LeafData.cc \
Line.cc \
MacroElement.cc \
-io/MacroWriter.cc \
+Marker.cc \
+Mesh.cc \
+MeshStructure.cc \
+NonLinUpdater.cc \
+Operator.cc \
+OperatorTerm.cc \
Parameters.cc \
Parametric.cc \
+PeriodicBC.cc \
+ProblemImplicit.cc \
+ProblemInstat.cc \
+ProblemInterpolScal.cc \
+ProblemInterpolVec.cc \
+ProblemNonLin.cc \
+ProblemScal.cc \
+ProblemVec.cc \
+ProblemVecDbg.cc \
+Projection.cc \
+QPInfo.cc \
+QPsiPhi.cc \
Quadrature.cc \
RCNeighbourList.cc \
+Recovery.cc \
+RecoveryEstimator.cc \
RefinementManager.cc \
RefinementManager1d.cc \
RefinementManager2d.cc \
RefinementManager3d.cc \
+ResidualEstimator.cc \
+ResidualParallelEstimator.cc \
+RobinBC.cc \
+ScalableQuadrature.cc \
+SecondOrderAssembler.cc \
+SecondOrderTerm.cc \
+Serializer.cc \
+StandardProblemIteration.cc \
+SubAssembler.cc \
+SubElInfo.cc \
+SubQuadrature.cc \
+SurfaceQuadrature.cc \
Tetrahedron.cc \
Traverse.cc \
TraverseParallel.cc \
Triangle.cc \
-io/ValueWriter.cc \
-io/VtkWriter.cc \
+VertexVector.cc \
+ZeroOrderAssembler.cc \
+ZeroOrderTerm.cc \
+io/ArhReader.cc \
+io/ArhWriter.cc \
+io/DataCollector.cc \
io/DofWriter.cc \
+io/ElementFileWriter.cc \
+io/FileWriter.cc \
+io/GNUPlotWriter.cc \
+io/MacroInfo.cc \
+io/MacroReader.cc \
+io/MacroWriter.cc \
io/PngWriter.cc \
io/PovrayWriter.cc \
-io/DataCollector.cc \
-ScalableQuadrature.cc \
-SubElInfo.cc \
-ElementDofIterator.cc \
-parallel/InteriorBoundary.cc \
-Debug.cc \
-io/ArhReader.cc \
-io/ArhWriter.cc \
+io/ValueReader.cc \
+io/ValueWriter.cc \
+io/VtkWriter.cc \
time/RosenbrockAdaptInstationary.cc \
-time/RosenbrockStationary.cc \
-time/RosenbrockMethod.cc
+time/RosenbrockMethod.cc \
+time/RosenbrockStationary.cc
-COMPOSITE_SOURCE_DIR = ../compositeFEM/src
libcompositeFEM_la_CXXFLAGS = $(libamdis_la_CXXFLAGS)
-libcompositeFEM_la_SOURCES = $(COMPOSITE_SOURCE_DIR)/CFE_Integration.h \
-$(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc \
-$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.h \
-$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.cc \
-$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.h \
-$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.cc \
-$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.h \
-$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.cc \
-$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.h \
-$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.cc \
-$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.h \
-$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.cc \
-$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.h \
-$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.cc \
-$(COMPOSITE_SOURCE_DIR)/SubPolytope.h $(COMPOSITE_SOURCE_DIR)/SubPolytope.cc \
-$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.h \
-$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.cc \
-$(COMPOSITE_SOURCE_DIR)/TranslateLsFct.h
+libcompositeFEM_la_SOURCES = \
+compositeFEM/CFE_Integration.cc \
+compositeFEM/CFE_NormAndErrorFcts.cc \
+compositeFEM/CompositeFEMMethods.cc \
+compositeFEM/CompositeFEMOperator.cc \
+compositeFEM/ElementLevelSet.cc \
+compositeFEM/LevelSetAdaptMesh.cc \
+compositeFEM/PenaltyOperator.cc \
+compositeFEM/SubElementAssembler.cc \
+compositeFEM/SubPolytope.cc
all: all-am
@@ -793,7 +800,8 @@ distclean-compile:
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-FixVec.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-GNUPlotWriter.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-Global.Plo@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-InteriorBoundary.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-GlobalDOFNumbering.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-GlobalElementNumbering.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-Lagrange.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-LeafData.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-Line.Plo@am__quote@
@@ -820,6 +828,7 @@ distclean-compile:
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-PetscSolver.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-PngWriter.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-PovrayWriter.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-ProblemImplicit.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-ProblemInstat.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-ProblemInterpolScal.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-ProblemInterpolVec.Plo@am__quote@
@@ -828,6 +837,7 @@ distclean-compile:
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-ProblemVec.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-ProblemVecDbg.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-Projection.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-QPInfo.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-QPsiPhi.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-Quadrature.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-RCNeighbourList.Plo@am__quote@
@@ -838,6 +848,7 @@ distclean-compile:
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-RefinementManager2d.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-RefinementManager3d.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-ResidualEstimator.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-ResidualParallelEstimator.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-RobinBC.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-RosenbrockAdaptInstationary.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-RosenbrockMethod.Plo@am__quote@
@@ -850,6 +861,7 @@ distclean-compile:
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@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-SubElInfo.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-SubQuadrature.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-SurfaceQuadrature.Plo@am__quote@
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@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-Traverse.Plo@am__quote@
@@ -893,26 +905,12 @@ distclean-compile:
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libamdis_la-MeshDistributor.lo: parallel/MeshDistributor.cc
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@@ -921,6 +919,13 @@ libamdis_la-MeshDistributor.lo: parallel/MeshDistributor.cc
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+libamdis_la-MeshManipulation.lo: parallel/MeshManipulation.cc
+@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-MeshManipulation.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-MeshManipulation.Tpo" -c -o libamdis_la-MeshManipulation.lo `test -f 'parallel/MeshManipulation.cc' || echo '$(srcdir)/'`parallel/MeshManipulation.cc; \
+@am__fastdepCXX_TRUE@ then mv -f "$(DEPDIR)/libamdis_la-MeshManipulation.Tpo" "$(DEPDIR)/libamdis_la-MeshManipulation.Plo"; else rm -f "$(DEPDIR)/libamdis_la-MeshManipulation.Tpo"; exit 1; fi
+@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='parallel/MeshManipulation.cc' object='libamdis_la-MeshManipulation.lo' libtool=yes @AMDEPBACKSLASH@
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+
libamdis_la-MeshPartitioner.lo: parallel/MeshPartitioner.cc
@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-MeshPartitioner.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-MeshPartitioner.Tpo" -c -o libamdis_la-MeshPartitioner.lo `test -f 'parallel/MeshPartitioner.cc' || echo '$(srcdir)/'`parallel/MeshPartitioner.cc; \
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@@ -928,12 +933,12 @@ libamdis_la-MeshPartitioner.lo: parallel/MeshPartitioner.cc
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+libamdis_la-MpiHelper.lo: parallel/MpiHelper.cc
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libamdis_la-ParallelDebug.lo: parallel/ParallelDebug.cc
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@@ -949,6 +954,13 @@ libamdis_la-ParallelProblemStatBase.lo: parallel/ParallelProblemStatBase.cc
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
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+libamdis_la-ParMetisPartitioner.lo: parallel/ParMetisPartitioner.cc
+@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-ParMetisPartitioner.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-ParMetisPartitioner.Tpo" -c -o libamdis_la-ParMetisPartitioner.lo `test -f 'parallel/ParMetisPartitioner.cc' || echo '$(srcdir)/'`parallel/ParMetisPartitioner.cc; \
+@am__fastdepCXX_TRUE@ then mv -f "$(DEPDIR)/libamdis_la-ParMetisPartitioner.Tpo" "$(DEPDIR)/libamdis_la-ParMetisPartitioner.Plo"; else rm -f "$(DEPDIR)/libamdis_la-ParMetisPartitioner.Tpo"; exit 1; fi
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libamdis_la-PetscSolver.lo: parallel/PetscSolver.cc
@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-PetscSolver.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-PetscSolver.Tpo" -c -o libamdis_la-PetscSolver.lo `test -f 'parallel/PetscSolver.cc' || echo '$(srcdir)/'`parallel/PetscSolver.cc; \
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libamdis_la-ElInfo1d.lo: ElInfo1d.cc
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@@ -1439,6 +1164,41 @@ libamdis_la-ElInfo3d.lo: ElInfo3d.cc
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+
libamdis_la-FiniteElemSpace.lo: FiniteElemSpace.cc
@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-FiniteElemSpace.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-FiniteElemSpace.Tpo" -c -o libamdis_la-FiniteElemSpace.lo `test -f 'FiniteElemSpace.cc' || echo '$(srcdir)/'`FiniteElemSpace.cc; \
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+libamdis_la-FirstOrderAssembler.lo: FirstOrderAssembler.cc
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+@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='FirstOrderTerm.cc' object='libamdis_la-FirstOrderTerm.lo' libtool=yes @AMDEPBACKSLASH@
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libamdis_la-FixVec.lo: FixVec.cc
@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-FixVec.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-FixVec.Tpo" -c -o libamdis_la-FixVec.lo `test -f 'FixVec.cc' || echo '$(srcdir)/'`FixVec.cc; \
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+libamdis_la-GlobalDOFNumbering.lo: GlobalDOFNumbering.cc
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+@am__fastdepCXX_TRUE@ then mv -f "$(DEPDIR)/libamdis_la-GlobalDOFNumbering.Tpo" "$(DEPDIR)/libamdis_la-GlobalDOFNumbering.Plo"; else rm -f "$(DEPDIR)/libamdis_la-GlobalDOFNumbering.Tpo"; exit 1; fi
+@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='GlobalDOFNumbering.cc' object='libamdis_la-GlobalDOFNumbering.lo' libtool=yes @AMDEPBACKSLASH@
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+@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='GlobalElementNumbering.cc' object='libamdis_la-GlobalElementNumbering.lo' libtool=yes @AMDEPBACKSLASH@
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libamdis_la-Lagrange.lo: Lagrange.cc
@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-Lagrange.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-Lagrange.Tpo" -c -o libamdis_la-Lagrange.lo `test -f 'Lagrange.cc' || echo '$(srcdir)/'`Lagrange.cc; \
@am__fastdepCXX_TRUE@ then mv -f "$(DEPDIR)/libamdis_la-Lagrange.Tpo" "$(DEPDIR)/libamdis_la-Lagrange.Plo"; else rm -f "$(DEPDIR)/libamdis_la-Lagrange.Tpo"; exit 1; fi
@@ -1467,6 +1255,13 @@ libamdis_la-Lagrange.lo: Lagrange.cc
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+libamdis_la-LeafData.lo: LeafData.cc
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+@am__fastdepCXX_TRUE@ then mv -f "$(DEPDIR)/libamdis_la-LeafData.Tpo" "$(DEPDIR)/libamdis_la-LeafData.Plo"; else rm -f "$(DEPDIR)/libamdis_la-LeafData.Tpo"; exit 1; fi
+@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='LeafData.cc' object='libamdis_la-LeafData.lo' libtool=yes @AMDEPBACKSLASH@
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libamdis_la-Line.lo: Line.cc
@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-Line.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-Line.Tpo" -c -o libamdis_la-Line.lo `test -f 'Line.cc' || echo '$(srcdir)/'`Line.cc; \
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mostlyclean-libtool:
-rm -f *.lo
@@ -1825,7 +1872,7 @@ distclean-tags:
-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
distdir: $(DISTFILES)
- $(mkdir_p) $(distdir)/io $(distdir)/parallel $(distdir)/time
+ $(mkdir_p) $(distdir)/compositeFEM $(distdir)/io $(distdir)/itl $(distdir)/parallel $(distdir)/time
@srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \
topsrcdirstrip=`echo "$(top_srcdir)" | sed 's|.|.|g'`; \
list='$(DISTFILES)'; for file in $$list; do \
diff --git a/AMDiS/src/MpCCIAdapter.cc b/AMDiS/src/MpCCIAdapter.cc
deleted file mode 100644
index 1977df18..00000000
--- a/AMDiS/src/MpCCIAdapter.cc
+++ /dev/null
@@ -1,576 +0,0 @@
-//
-// Software License for AMDiS
-//
-// Copyright (c) 2010 Dresden University of Technology
-// All rights reserved.
-// Authors: Simon Vey, Thomas Witkowski et al.
-//
-// This file is part of AMDiS
-//
-// See also license.opensource.txt in the distribution.
-
-
-#include "MpCCIAdapter.h"
-#include "FiniteElemSpace.h"
-#include "SMIAdapter.h"
-#include "DOFVector.h"
-#include "mpi.h"
-
-namespace AMDiS
-{
-
- MpCCIAdapter::MpCCIAdapter(int localComm,
- int meshID,
- int partitionID,
- bool useMPI,
- FiniteElemSpace *feSpace,
- int elementRegion,
- int surfaceRegion,
- int numQuantities,
- int *quantityIDs,
- int *quantityDims,
- DOFVector<double> **dofVectors,
- int numSyncPoints,
- int *syncPointIDs,
- const char *idString,
- bool (*elementFct)(ElInfo *elInfo),
- bool (*surfaceFct)(ElInfo *elInfo, int side))
- : localComm_(localComm),
- feSpace_(feSpace),
- applicationID_(1),
- meshID_(meshID),
- partitionID_(partitionID),
- useMPI_(useMPI)
- {
- FUNCNAME("MpCCIAdapter::MpCCIAdapter()");
- int i;
-
- mpiRank_ = useMPI_ ? MPI::COMM_WORLD.Get_rank() : 0;
- mpiSize_ = useMPI_ ? MPI::COMM_WORLD.Get_size() : 1;
-
- TEST_EXIT(surfaceRegion == -1)("not yet for surface regions\n");
-
- // create SMI adapter
- smiAdapter_ = new SMIAdapter(applicationID_,
- meshID_,
- feSpace_,
- elementRegion,
- surfaceRegion,
- elementFct,
- surfaceFct);
-
- // MpCCI initialize
- //if(useMPI_) MPI::COMM_WORLD.Barrier();
- //if(mpiRank_ == 0) {
-
- int error;
-
- if (idString) {
- error = CCI_Init_with_id_string(NULL, NULL, idString);
- TEST_EXIT(error == 0)
- ("CCI_Init_with_id_string() failed\n");
- } else {
- error = CCI_Init(NULL, NULL);
- TEST_EXIT(error == 0)("CCI_Init() failed\n");
- }
-
- //}
- //if(useMPI_) MPI::COMM_WORLD.Barrier();
-
- //}
- //if(useMPI_) MPI::COMM_WORLD.Barrier();
-
- localCodeID_ = CCI_MYCODEID;
- int remoteCodeID = (localCodeID_ == 1) ? 2 : 1;
-
- // define communicator
- int sendQuantities[CCI_MAX_NQUANTITIES];
- int sendMeshes[CCI_MAX_NQUANTITIES];
- int sendNQuantities;
- int recvQuantities[CCI_MAX_NQUANTITIES];
- int recvMeshes[CCI_MAX_NQUANTITIES];
- int recvNQuantities;
-
- if(localComm == -1) {
- localComm_ = CCI_COMM_RCODE[remoteCodeID];
- } else {
- error = CCI_Comm_info(localComm_,
- &remoteCodeID_,
- &remoteComm_,
- CCI_MAX_NQUANTITIES,
- sendQuantities,
- sendMeshes,
- &sendNQuantities,
- CCI_MAX_NQUANTITIES,
- recvQuantities,
- recvMeshes,
- &recvNQuantities);
-
- TEST_EXIT(error)("CCI_Comm_info() failed\n");
-
- MSG("remote comm id: %d\n", remoteComm_);
-
- error = CCI_Def_comm(localComm_,
- remoteCodeID_,
- remoteComm_,
- numQuantities,
- quantityIDs,
- 1,
- &meshID_);
-
- TEST_EXIT(error)("CCI_Def_comm() failed\n");
- }
-
- error = CCI_Def_partition(meshID_, partitionID_);
-
- TEST_EXIT(error == 0)("CCI_Def_partition() failed\n");
-
-
- transferMeshToMpCCI();
-
- for (i = 0; i < numSyncPoints; i++) {
- error = CCI_Sync_point_info(syncPointIDs[i],
- CCI_MAX_NQUANTITIES,
- sendQuantities,
- sendMeshes,
- &sendNQuantities,
- CCI_MAX_NQUANTITIES,
- recvQuantities,
- recvMeshes,
- &recvNQuantities);
-
- TEST_EXIT(error == 0)("CCI_Sync_point_info() failed\n");
-
- MSG("sync point id: %d\n", syncPointIDs[i]);
- int j;
- for(j = 0; j < sendNQuantities; j++) {
- MSG("send quantity: %d\n", sendQuantities[j]);
- }
- for(j = 0; j < recvNQuantities; j++) {
- MSG("recv quantity: %d\n", recvQuantities[j]);
- }
-
- error = CCI_Def_sync_point(syncPointIDs[i],
- sendNQuantities,
- sendQuantities,
- sendNQuantities,
- sendMeshes,
- recvNQuantities,
- recvQuantities,
- recvNQuantities,
- recvMeshes);
-
- TEST_EXIT(error == 0)("CCI_Def_sync_point() failed\n");
- }
-
- // define quantities
- DOFVector<double> **ptr = dofVectors;
- for(i = 0; i < numQuantities; i++) {
- int dim = quantityDims[i];
- smiAdapter_->addQuantity(quantityIDs[i], dim, ptr);
- ptr += dim;
- }
-
- // close MpCCI setup
- int error = CCI_Close_setup(localCodeID_);
-
- TEST_EXIT(error == 0)("CCI_Close_setup() failed\n");
- }
-
- MpCCIAdapter::~MpCCIAdapter()
- {
- delete smiAdapter_;
- int error == CCI_Finalize();
- TEST_EXIT(error == 0)("CCI_Finalize() failed\n");
- }
-
- void MpCCIAdapter::transferMeshToMpCCI()
- {
- // update SMI data
- smiAdapter_->transferMeshToSMI();
-
- // read SMI data
- int error;
- int dow = Global::getGeo(WORLD);
- int dim = feSpace_->getMesh()->getDim();
- int numNodes;
- int *nodeIDs;
- double *coords;
- int numElems;
- int *elemIDs;
- int numElemNodeIDs;
- int *elemNodeIDs;
- int elemType;
- int *nodesPerElem;
-
- error = SMI_Begin_read_transaction(applicationID_, meshID_);
- TEST_EXIT(error == SMI_OK)("SMI_Begin_read_transaction() failed\n");
-
- error = SMI_Get_all_nodes(applicationID_,
- meshID_,
- &numNodes,
- &nodeIDs);
- TEST_EXIT(error == SMI_OK)("SMI_Get_all_nodes() failed\n");
-
- coords = new double[numNodes * dow];
-
- error = SMI_Get_nodes(applicationID_,
- meshID_,
- numNodes,
- dow,
- nodeIDs,
- coords);
- TEST_EXIT(error == SMI_OK)("SMI_Get_nodes() failed (%d)\n", error);
-
- error = SMI_Get_all_elems(applicationID_,
- meshID_,
- &numElems,
- &elemIDs);
- TEST_EXIT(error == SMI_OK)("SMI_Get_all_elems() failed\n");
-
- error = SMI_Get_elems(applicationID_,
- meshID_,
- numElems,
- elemIDs,
- &numElemNodeIDs,
- &elemNodeIDs,
- NULL,
- NULL);
- TEST_EXIT(error == SMI_OK)("SMI_Get_elems() failed\n");
-
- switch(dim) {
- case 1:
- elemType = CCI_ELEM_LINE;
- break;
- case 2:
- elemType = CCI_ELEM_TRIANGLE;
- break;
- case 3:
- elemType = CCI_ELEM_TETRAHEDRON;
- break;
- default: ERROR_EXIT("invalid dim\n");
- }
-
- nodesPerElem = new int[numElems];
- for (int i = 0; i < numElems; i++)
- nodesPerElem[i] = dim + 1;
-
- error = SMI_End_read_transaction(applicationID_, meshID_);
- TEST_EXIT(error == SMI_OK)("SMI_End_read_transaction() failed\n");
-
-
- // transfer data to MpCCI
- error = CCI_Def_nodes(meshID_,
- partitionID_,
- dow,
- numNodes,
- numNodes,
- nodeIDs,
- CCI_DOUBLE,
- coords);
- TEST_EXIT(error == 0)("CCI_Def_nodes() failed\n");
-
- error = CCI_Def_elems(meshID_,
- partitionID_,
- numElems,
- numElems,
- elemIDs,
- 1,
- &elemType,
- nodesPerElem,
- elemNodeIDs);
- TEST_EXIT(error == 0)("CCI_Def_elems() failed\n");
-
- // free memory
- delete [] coords;
- delete [] nodesPerElem;
- }
-
- void MpCCIAdapter::remesh()
- {
- int error;
- error = CCI_Remesh();
- TEST_EXIT(error == 0)("CCI_Remesh() failed\n");
-
- transferMeshToMpCCI();
-
- int mode = CCI_TOTAL_REMESH;
- error = CCI_Close_remesh(1, &meshID_, 1, &mode);
- TEST_EXIT(error == 0)("CCI_Close_remesh() failed\n");
- }
-
- void MpCCIAdapter::checkConvergence(int myConvergence,
- int *globalConvergence)
- {
- int error = CCI_Check_convergence(myConvergence,
- globalConvergence,
- CCI_ANY_CODE);
- //localComm_);
- TEST_EXIT(error == 0)("CCI_Check_convergence() failed\n");
- }
-
- void MpCCIAdapter::putNodes(int quantityID)
- {
- int error;
- int numNodes;
- int dim;
- int *nodeIDs;
- double *values;
-
- smiAdapter_->transferQuantitiesToSMI(quantityID);
-
- error = SMI_Begin_read_transaction(applicationID_, meshID_);
- TEST_EXIT(error == SMI_OK)("SMI_Begin_read_transaction() failed\n");
-
- error = SMI_Get_all_nodes(applicationID_,
- meshID_,
- &numNodes,
- &nodeIDs);
- TEST_EXIT(error == SMI_OK)("SMI_Get_all_nodes() failed\n");
-
- error = SMI_Get_quantity_info(applicationID_,
- meshID_,
- quantityID,
- NULL,
- NULL,
- &dim);
-
- TEST_EXIT(error == SMI_OK)("SMI_Get_quantity_info() failed\n");
-
- values = new double[dim * numNodes];
-
- error = SMI_Get_quantity_values(applicationID_,
- meshID_,
- quantityID,
- SMI_TYPE_DOUBLE,
- dim,
- numNodes,
- nodeIDs,
- values);
-
- TEST_EXIT(error == SMI_OK)("SMI_Get_quantity_values() failed\n");
-
- error = SMI_End_read_transaction(applicationID_, meshID_);
- TEST_EXIT(error == SMI_OK)("SMI_End_read_transaction() failed\n");
-
- // copy double to float
- float *floatValues = new float[dim * numNodes];
-
-#if 0
- for (int i = 0; i < dim*numNodes; i++)
- floatValues[i] = static_cast<float>(values[i]);
-
- error = CCI_Put_nodes(meshID_,
- partitionID_,
- quantityID,
- dim,
- numNodes,
- numNodes,
- nodeIDs,
- CCI_FLOAT,
- floatValues);
- TEST_EXIT(error == 0)("CCI_Put_nodes() failed\n");
-
- delete [] floatValues;
-#endif
-
- error = CCI_Put_nodes(meshID_,
- partitionID_,
- quantityID,
- dim,
- numNodes,
- numNodes,
- nodeIDs,
- CCI_DOUBLE,
- values);
- TEST_EXIT(error == 0)("CCI_Put_nodes() failed\n");
-
- delete [] values;
- }
-
- void MpCCIAdapter::getNodes(int quantityID)
- {
- int error;
- int numNodes;
- int dim;
- int *nodeIDs;
- double *values;
- int numEmptyNodes;
-
- error = SMI_Begin_read_transaction(applicationID_, meshID_);
- TEST_EXIT(error == SMI_OK)("SMI_Begin_read_transaction() failed\n");
-
- error = SMI_Get_all_nodes(applicationID_,
- meshID_,
- &numNodes,
- &nodeIDs);
- TEST_EXIT(error == SMI_OK)("SMI_Get_all_nodes() failed\n");
-
- error = SMI_Get_quantity_info(applicationID_,
- meshID_,
- quantityID,
- NULL,
- NULL,
- &dim);
-
- TEST_EXIT(error == SMI_OK)("SMI_Get_quantity_info() failed (%d)\n", error);
-
- error = SMI_End_read_transaction(applicationID_, meshID_);
- TEST_EXIT(error == SMI_OK)("SMI_End_read_transaction() failed\n");
-
- values = new double[dim * numNodes];
-
-#if 0
- // copy double to float
- float *floatValues = new float[dim * numNodes];
-
- error = CCI_Get_nodes(meshID_,
- partitionID_,
- quantityID,
- dim,
- numNodes,
- numNodes,
- nodeIDs,
- CCI_FLOAT,
- floatValues,
- 0,
- NULL,
- &numEmptyNodes);
- TEST_EXIT(error == 0)("CCI_Get_nodes() failed\n");
-
- for (int i = 0; i < dim * numNodes; i++)
- values[i] = static_cast<double>(floatValues[i]);
-
- delete [] floatValues;
-#endif
-
- error = CCI_Get_nodes(meshID_,
- partitionID_,
- quantityID,
- dim,
- numNodes,
- numNodes,
- nodeIDs,
- CCI_DOUBLE,
- values,
- 0,
- NULL,
- &numEmptyNodes);
- TEST_EXIT(error == 0)("CCI_Get_nodes() failed\n");
-
-
- error = SMI_Begin_write_transaction(applicationID_, meshID_);
- TEST_EXIT(error == SMI_OK)("SMI_Begin_write_transaction() failed\n");
-
- error = SMI_Set_quantity_values(applicationID_,
- meshID_,
- quantityID,
- SMI_TYPE_DOUBLE,
- dim,
- numNodes,
- nodeIDs,
- values);
-
- TEST_EXIT(error == SMI_OK)("SMI_Set_quantity_values() failed\n");
-
- error = SMI_End_write_transaction(applicationID_, meshID_);
- TEST_EXIT(error == SMI_OK)("SMI_End_write_transaction() failed\n");
-
- smiAdapter_->getQuantitiesFromSMI(quantityID);
-
- delete [] values;
- }
-
- void MpCCIAdapter::send(int numQuantities, int *quantityIDs)
- {
- int error = CCI_Send(numQuantities,
- quantityIDs,
- 1,
- &meshID_,
- localComm_);
- TEST_EXIT(error == 0)("CCI_Send() failed\n");
- }
-
- void MpCCIAdapter::isend(int numQuantities, int *quantityIDs, CCI_Request *request)
- {
- int error = CCI_Isend(numQuantities,
- quantityIDs,
- 1,
- &meshID_,
- localComm_,
- request);
- TEST_EXIT(error == 0)("CCI_Isend() failed\n");
- }
-
- void MpCCIAdapter::wait(CCI_Request *request)
- {
- CCI_Status status;
- int error = CCI_Wait(request,
- &status);
- TEST_EXIT(error == 0)("CCI_Wait() failed\n");
- }
-
- void MpCCIAdapter::recv(int numQuantities, int *quantityIDs)
- {
- CCI_Status status;
- MSG("numQuantities %d\n", numQuantities);
- MSG("meshID %d\n", meshID_);
- MSG("localComm %d\n", localComm_);
- int i;
- for(i = 0; i < numQuantities; i++) {
- MSG("quantity %d: %d\n", i, quantityIDs[i]);
- }
- int error = CCI_Recv(numQuantities,
- quantityIDs,
- 1,
- &meshID_,
- localComm_,
- &status);
- TEST_EXIT(error == 0)("CCI_Send() failed\n");
- }
-
- void MpCCIAdapter::reachSyncPoint(int syncPointID)
- {
- CCI_Status status;
- int error = CCI_Reach_sync_point(syncPointID, &status);
- TEST_EXIT(error == 0)("CCI_Reach_sync_point() failed\n");
- }
-
- void MpCCIAdapter::closeCouplingStep()
- {
- int error = CCI_Close_coupling_step(1, 0, 0, 0, 0, 0, 0);
- TEST_EXIT(error == 0)("CCI_Close_coupling_step() failed\n");
- }
-
- void MpCCIAdapter::setIndexMappings(std::map<DegreeOfFreedom, DegreeOfFreedom> *newNodeIndex,
- std::map<DegreeOfFreedom, DegreeOfFreedom> *oldNodeIndex,
- std::map<int, int> *newElementIndex,
- std::map<int, int> *oldElementIndex)
- {
- smiAdapter_->setIndexMappings(newNodeIndex,
- oldNodeIndex,
- newElementIndex,
- oldElementIndex);
- }
-
- int MpCCIAdapter::getNumElements()
- {
- int numElems = 0;
- int *elemIDs;
- int error = SMI_Begin_read_transaction(applicationID_, meshID_);
- TEST_EXIT(error == SMI_OK)("SMI_Begin_read_transaction() failed\n");
-
- error = SMI_Get_all_elems(applicationID_,
- meshID_,
- &numElems,
- &elemIDs);
-
- TEST_EXIT(error == SMI_OK)("SMI_Get_all_elems() failed\n");
-
- error = SMI_End_read_transaction(applicationID_, meshID_);
- TEST_EXIT(error == SMI_OK)("SMI_End_read_transaction() failed\n");
-
- return numElems;
- }
-
-}
diff --git a/AMDiS/src/MpCCIAdapter.h b/AMDiS/src/MpCCIAdapter.h
deleted file mode 100644
index e80665c4..00000000
--- a/AMDiS/src/MpCCIAdapter.h
+++ /dev/null
@@ -1,110 +0,0 @@
-// ============================================================================
-// == ==
-// == AMDiS - Adaptive multidimensional simulations ==
-// == ==
-// == http://www.amdis-fem.org ==
-// == ==
-// ============================================================================
-//
-// Software License for AMDiS
-//
-// Copyright (c) 2010 Dresden University of Technology
-// All rights reserved.
-// Authors: Simon Vey, Thomas Witkowski et al.
-//
-// This file is part of AMDiS
-//
-// See also license.opensource.txt in the distribution.
-
-
-
-/** \file MpCCIAdapter.h */
-
-#ifndef AMDIS_MPCCIADAPTER_H
-#define AMDIS_MPCCIADAPTER_H
-
-#include <map>
-#include "AMDiS_fwd.h"
-#include "cci.h"
-#include "cci_const.h"
-
-namespace AMDiS {
-
- class MpCCIAdapter
- {
- public:
- MpCCIAdapter(int localComm,
- int meshID,
- int partitionID,
- bool useMPI,
- FiniteElemSpace *feSpace,
- int elementRegion,
- int surfaceRegion,
- int numQuantities,
- int *quantityIDs,
- int *quantityDims,
- DOFVector<double> **dofVectors,
- int numSyncPoints,
- int *syncPointIDs,
- const char *idString = NULL,
- bool (*elementFct)(ElInfo *elInfo) = NULL,
- bool (*surfaceFct)(ElInfo *elInfo, int side) = NULL);
-
- ~MpCCIAdapter();
-
- void remesh();
-
- void putNodes(int quantityID);
-
- void getNodes(int quantityID);
-
- void send(int numQuantities, int *quantityIDs);
-
- void isend(int numQuantities, int *quantityIDs, CCI_Request *request);
-
- void wait(CCI_Request *request);
-
- void recv(int numQuantities, int *quantityIDs);
-
- void reachSyncPoint(int syncPointID);
-
- void closeCouplingStep();
-
- void checkConvergence(int myConvergence,
- int *globalConvergence);
-
- void setIndexMappings(std::map<DegreeOfFreedom, DegreeOfFreedom> *newNodeIndex,
- std::map<DegreeOfFreedom, DegreeOfFreedom> *oldNodeIndex,
- std::map<int, int> *newElementIndex,
- std::map<int, int> *oldElementIndex);
-
-
- int getNumElements();
-
- protected:
- void transferMeshToMpCCI();
-
- protected:
- int localCodeID_;
- int remoteCodeID_;
-
- int localComm_;
- int remoteComm_;
-
- FiniteElemSpace *feSpace_;
-
- int applicationID_;
- int meshID_;
- int partitionID_;
-
- SMIAdapter *smiAdapter_;
-
- bool useMPI_;
-
- int mpiRank_;
- int mpiSize_;
- };
-
-}
-
-#endif
diff --git a/AMDiS/src/PardisoSolver.cc b/AMDiS/src/PardisoSolver.cc
deleted file mode 100644
index 9c5e1369..00000000
--- a/AMDiS/src/PardisoSolver.cc
+++ /dev/null
@@ -1,223 +0,0 @@
-//
-// Software License for AMDiS
-//
-// Copyright (c) 2010 Dresden University of Technology
-// All rights reserved.
-// Authors: Simon Vey, Thomas Witkowski et al.
-//
-// This file is part of AMDiS
-//
-// See also license.opensource.txt in the distribution.
-
-
-#include "PardisoSolver.h"
-#include "SystemVector.h"
-#include "MatVecMultiplier.h"
-
-#ifdef HAVE_MKL
-
-#include <mkl.h>
-#include <mkl_pardiso.h>
-
-namespace AMDiS {
-
- template<>
- int PardisoSolver<SystemVector>::solveSystem(MatVecMultiplier<SystemVector> *matVec,
- SystemVector *x, SystemVector *b,
- bool reuseMatrix)
- {
- FUNCNAME("PardisoSolver::solveSystem()");
-
- TEST_EXIT(x->getSize() == b->getSize())("Vectors x and b must have the same size!");
-
- // Extract the matrix of DOF-matrices.
- StandardMatVec<Matrix<DOFMatrix*>, SystemVector> *stdMatVec =
- dynamic_cast<StandardMatVec<Matrix<DOFMatrix*>, SystemVector> *>(matVec);
- Matrix<DOFMatrix*> *m = stdMatVec->getMatrix();
-
- // Number of systems.
- int nComponents = m->getSize();
- // Size of the new composed matrix.
- int newMatrixSize = ((*m)[0][0])->getFeSpace()->getAdmin()->getUsedSize() * nComponents;
-
- // The new matrix has to be stored in compressed row format, therefore
- // the rows are collected.
- std::vector< std::vector< MatEntry > > rows(newMatrixSize, std::vector<MatEntry>(0));
-
- // Counter for the number of non-zero elements in the new matrix.
- int nElements = 0;
-
- for (int stencilRow = 0; stencilRow < nComponents; stencilRow++) {
- for (int stencilCol = 0; stencilCol < nComponents; stencilCol++) {
-
- if (!(*m)[stencilRow][stencilCol]) {
- continue;
- }
-
- DOFMatrix::Iterator matrixRow((*m)[stencilRow][stencilCol], USED_DOFS);
- int rowIndex = 0;
- for (matrixRow.reset(); !matrixRow.end(); matrixRow++, rowIndex++) {
- for (int i = 0; i < static_cast<int>((*matrixRow).size()); i++) {
- if ((*matrixRow)[i].col >= 0) {
- MatEntry me;
- me.entry = (*matrixRow)[i].entry;
- // The col field is used to store the row number of the new element.
- me.col = ((*matrixRow)[i].col * nComponents) + stencilCol;
-
- rows[(rowIndex * nComponents) + stencilRow].push_back(me);
-
- nElements++;
- }
- }
- }
-
- }
- }
-
- double *a = (double*)malloc(sizeof(double) * nElements);
- MKL_INT *ja = (int*)malloc(sizeof(MKL_INT) * nElements);
- MKL_INT *ia = (int*)malloc(sizeof(MKL_INT) * (newMatrixSize + 1));
- double *bvec = (double*)malloc(sizeof(double) * newMatrixSize);
- double *xvec = (double*)malloc(sizeof(double) * newMatrixSize);
-
- int elCounter = 0;
- int rowCounter = 0;
- ia[0] = 1;
-
- for (std::vector< std::vector< MatEntry > >::iterator rowsIt = rows.begin();
- rowsIt != rows.end();
- ++rowsIt) {
-
- sort((*rowsIt).begin(), (*rowsIt).end(), CmpMatEntryCol());
-
- ia[rowCounter + 1] = ia[rowCounter] + (*rowsIt).size();
-
- for (std::vector<MatEntry>::iterator rowIt = (*rowsIt).begin();
- rowIt != (*rowsIt).end();
- rowIt++) {
- a[elCounter] = (*rowIt).entry;
- ja[elCounter] = (*rowIt).col + 1;
-
- elCounter++;
- }
-
- rowCounter++;
- }
-
- // Resort the right hand side of the linear system.
- for (int i = 0; i < b->getSize(); i++) {
- DOFVector<double>::Iterator it(b->getDOFVector(i), USED_DOFS);
-
- int counter = 0;
- for (it.reset(); !it.end(); ++it, counter++) {
- bvec[counter * nComponents + i] = *it;
- }
- }
-
- // real unsymmetric matrix
- MKL_INT mtype = 11;
-
- // number of right hand sides
- MKL_INT nRhs = 1;
-
- // Pardiso internal memory
- void *pt[64];
- for (int i = 0; i < 64; i++) {
- pt[i] = 0;
- }
-
- // Pardiso control parameters
- MKL_INT iparm[64];
- for (int i = 0; i < 64; i++) {
- iparm[i] = 0;
- }
-
- iparm[0] = 1; // No solver default
- iparm[1] = 2; // Fill-in reordering from METIS
- iparm[2] = mkl_get_max_threads(); // Number of threads
- iparm[7] = 2; // Max numbers of iterative refinement steps
- iparm[9] = 13; // Perturb the pivot elements with 1e-13
- iparm[10] = 1; // Use nonsymmetric permutation and scaling MPS
- iparm[17] = 0; // Output: Number of nonzeros in the factor LU
- iparm[18] = 0; // Output: Mflops for LU factorization
-
- // Maximum number of numerical factorizations
- MKL_INT maxfct = 1;
-
- // Which factorization to use
- MKL_INT mnum = 1;
-
- // Print statistical information in file
- MKL_INT msglvl = 0;
-
- // Error flag
- MKL_INT error = 0;
-
- MKL_INT n = newMatrixSize;
-
- // Reordering and symbolic factorization
- MKL_INT phase = 11;
-
- double ddum;
-
- MKL_INT idum;
-
- PARDISO(pt, &maxfct, &mnum, &mtype, &phase, &n, a, ia, ja, &idum, &nRhs,
- iparm, &msglvl, &ddum, &ddum, &error);
-
- TEST_EXIT(error == 0)("Intel MKL Pardiso error during symbolic factorization: %d\n", error);
-
- // Numerical factorization
- phase = 22;
-
- PARDISO(pt, &maxfct, &mnum, &mtype, &phase, &n, a, ia, ja, &idum, &nRhs,
- iparm, &msglvl, &ddum, &ddum, &error);
-
- TEST_EXIT(error == 0)("Intel MKL Pardiso error during numerical factorization: %d\n", error);
-
- // Back substitution and iterative refinement
- phase = 33;
- iparm[7] = 2; // Max numbers of iterative refinement steps
-
- PARDISO(pt, &maxfct, &mnum, &mtype, &phase, &n, a, ia, ja, &idum, &nRhs,
- iparm, &msglvl, bvec, xvec, &error);
-
- TEST_EXIT(error == 0)("Intel MKL Pardiso error during solution: %d\n", error);
-
- // Copy and resort solution.
- for (int i = 0; i < x->getSize(); i++) {
- DOFVector<double>::Iterator it(x->getDOFVector(i), USED_DOFS);
-
- int counter = 0;
- for (it.reset(); !it.end(); it++, counter++) {
- *it = xvec[counter * nComponents + i];
- }
- }
-
- // Calculate and print the residual.
- *p = *x;
- *p *= -1.0;
- matVec->matVec(NoTranspose, *p, *r);
- *r += *b;
-
- this->residual = norm(r);
-
- MSG("Residual: %e\n", this->residual);
-
- // Termination and release of memory
- phase = -1;
-
- PARDISO(pt, &maxfct, &mnum, &mtype, &phase, &n, a, ia, ja, &idum, &nRhs,
- iparm, &msglvl, &ddum, &ddum, &error);
-
- free(a);
- free(ja);
- free(ia);
- free(bvec);
- free(xvec);
-
- return(1);
- }
-}
-
-#endif // HAVE_MKL
diff --git a/AMDiS/src/PardisoSolver.h b/AMDiS/src/PardisoSolver.h
deleted file mode 100644
index 933df80b..00000000
--- a/AMDiS/src/PardisoSolver.h
+++ /dev/null
@@ -1,113 +0,0 @@
-// ============================================================================
-// == ==
-// == AMDiS - Adaptive multidimensional simulations ==
-// == ==
-// == http://www.amdis-fem.org ==
-// == ==
-// ============================================================================
-//
-// Software License for AMDiS
-//
-// Copyright (c) 2010 Dresden University of Technology
-// All rights reserved.
-// Authors: Simon Vey, Thomas Witkowski et al.
-//
-// This file is part of AMDiS
-//
-// See also license.opensource.txt in the distribution.
-
-
-
-/** \file PardisoSolver.h */
-
-#ifndef AMDIS_PARDISOSOLVER_H
-#define AMDIS_PARDISOSOLVER_H
-
-#ifdef HAVE_MKL
-
-#include <mkl.h>
-
-#include "OEMSolver.h"
-
-#if defined(MKL_ILP64)
-#define MKL_INT long long
-#else
-#define MKL_INT int
-#endif
-
-namespace AMDiS {
-
- /**
- * \ingroup Solver
- *
- * \brief
- * Wrapper for the external Intel MKL Pardiso solver
- *
- * This is a direct solver for large sparse matrices.
- */
- template<typename VectorType>
- class PardisoSolver : public OEMSolver<VectorType>
- {
- public:
- /** \brief
- * Creator class used in the OEMSolverMap.
- */
- class Creator : public OEMSolverCreator<VectorType>
- {
- public:
- virtual ~Creator() {};
-
- /** \brief
- * Returns a new UmfPackSolver object.
- */
- OEMSolver<VectorType>* create() {
- return new PardisoSolver<VectorType>(this->name);
- };
- };
-
- /** \brief
- * constructor
- */
- PardisoSolver(std::string name);
-
- /** \brief
- * destructor
- */
- ~PardisoSolver();
- protected:
- /** \brief
- * Implements OEMSolver<VectorType>::init().
- */
- void init() {
- p = this->vectorCreator->create();
- r = this->vectorCreator->create();
- };
-
- /** \brief
- * Implements OEMSolver<VectorType>::exit().
- */
- void exit() {
- this->vectorCreator->free(p);
- this->vectorCreator->free(r);
- };
-
- /** \brief
- * Implements OEMSolver<VectorType>::solve().
- */
- int solveSystem(MatVecMultiplier<VectorType> *mv,
- VectorType *x, VectorType *b, bool reuseMatrix);
-
- private:
- /** \brief
- * These vectors are justed to calculate the final residual of the solution.
- */
- VectorType *r, *p;
- };
-
-}
-
-#include "PardisoSolver.hh"
-
-#endif // HAVE_MKL
-
-#endif // AMDIS_PARDISOSOLVER_H
diff --git a/AMDiS/src/PardisoSolver.hh b/AMDiS/src/PardisoSolver.hh
deleted file mode 100644
index 414d0d82..00000000
--- a/AMDiS/src/PardisoSolver.hh
+++ /dev/null
@@ -1,27 +0,0 @@
-//
-// Software License for AMDiS
-//
-// Copyright (c) 2010 Dresden University of Technology
-// All rights reserved.
-// Authors: Simon Vey, Thomas Witkowski et al.
-//
-// This file is part of AMDiS
-//
-// See also license.opensource.txt in the distribution.
-
-
-#include "PardisoSolver.h"
-
-namespace AMDiS {
-
- template<typename VectorType>
- PardisoSolver<VectorType>::PardisoSolver(std::string name)
- : OEMSolver<VectorType>(name)
- {}
-
- template<typename VectorType>
- PardisoSolver<VectorType>::~PardisoSolver()
- {}
-
-}
-
diff --git a/AMDiS/src/QPInfo.cc b/AMDiS/src/QPInfo.cc
index 1e059897..2e0453b3 100644
--- a/AMDiS/src/QPInfo.cc
+++ b/AMDiS/src/QPInfo.cc
@@ -33,9 +33,11 @@ namespace AMDiS {
numPoints_ = quadrature_->getNumPoints();
}
+
QPInfo::~QPInfo()
{
- if (coordsAtQPs_) delete [] coordsAtQPs_;
+ if (coordsAtQPs_)
+ delete [] coordsAtQPs_;
if (elementNormalAtQPs_) {
for (int i = 0; i < numPoints_; i++)
@@ -57,12 +59,9 @@ namespace AMDiS {
if (grdLambdaConst_)
delete [] grdLambdaConst_;
- std::map<const DOFVector<double>*, VecQPInfo*>::iterator
- it, itEnd = vecQPInfos_.end();
+ std::map<const DOFVector<double>*, VecQPInfo*>::iterator it, itEnd = vecQPInfos_.end();
for (it = vecQPInfos_.begin(); it != itEnd; ++it) {
- if (it->second->valAtQPs_)
- delete [] it->second->valAtQPs_;
if (it->second->grdAtQPs_)
delete [] it->second->grdAtQPs_;
if (it->second->D2AtQPs_)
@@ -71,6 +70,7 @@ namespace AMDiS {
}
}
+
void QPInfo::initElement(const ElInfo *elInfo)
{
currentElInfo_ = elInfo;
@@ -78,8 +78,7 @@ namespace AMDiS {
elementNormalNumPointsValid_ = 0;
grdLambdaNumPointsValid_ = 0;
- std::map<const DOFVector<double>*, VecQPInfo*>::iterator
- it, itEnd = vecQPInfos_.end();
+ std::map<const DOFVector<double>*, VecQPInfo*>::iterator it, itEnd = vecQPInfos_.end();
for (it = vecQPInfos_.begin(); it != itEnd; ++it) {
it->second->valNumPointsValid_ = 0;
@@ -88,6 +87,7 @@ namespace AMDiS {
}
}
+
WorldVector<double> *QPInfo::getCoordsAtQPs(int numPoints)
{
if (coordsNumPointsValid_ < numPoints) {
@@ -104,9 +104,10 @@ namespace AMDiS {
return coordsAtQPs_;
}
- double *QPInfo::getVecAtQPs(const DOFVector<double>* vec,
- int numPoints,
- const FastQuadrature *quadFast)
+
+ mtl::dense_vector<double>& QPInfo::getVecAtQPs(const DOFVector<double>* vec,
+ int numPoints,
+ const FastQuadrature *quadFast)
{
// check fast quadrature
if (quadFast)
@@ -123,54 +124,50 @@ namespace AMDiS {
if (localVecQPInfo->valNumPointsValid_ < numPoints) {
// allocate memory if necessary
- if (localVecQPInfo->valAtQPs_ == NULL)
- localVecQPInfo->valAtQPs_ = new double[numPoints_];
+ localVecQPInfo->valAtQPs.change_dim(numPoints_);
// fill memory
vec->getVecAtQPs(currentElInfo_,
quadrature_,
quadFast,
- localVecQPInfo->valAtQPs_,
- numPoints);
+ localVecQPInfo->valAtQPs);
localVecQPInfo->valNumPointsValid_ = numPoints;
}
// return values
- return localVecQPInfo->valAtQPs_;
+ return localVecQPInfo->valAtQPs;
}
+
WorldVector<double> *QPInfo::getGrdAtQPs(const DOFVector<double>* vec,
int numPoints,
const FastQuadrature *quadFast)
{
// check fast quadrature
- if(quadFast) {
+ if (quadFast) {
TEST_EXIT_DBG(quadrature_ == quadFast->getQuadrature())
("quadrature_ != quadFast->quadrature\n");
}
// create new info if necessary
- if(vecQPInfos_[vec] == NULL) {
+ if (vecQPInfos_[vec] == NULL)
vecQPInfos_[vec] = new VecQPInfo;
- }
VecQPInfo *localVecQPInfo = vecQPInfos_[vec];
// update values if necessary
- if(localVecQPInfo->grdNumPointsValid_ < numPoints) {
+ if (localVecQPInfo->grdNumPointsValid_ < numPoints) {
// allocate memory if necessary
- if(localVecQPInfo->grdAtQPs_ == NULL) {
+ if (localVecQPInfo->grdAtQPs_ == NULL)
localVecQPInfo->grdAtQPs_ = new WorldVector<double>[numPoints_];
- }
// fill memory
vec->getGrdAtQPs(currentElInfo_,
quadrature_,
quadFast,
- localVecQPInfo->grdAtQPs_,
- numPoints);
+ localVecQPInfo->grdAtQPs_);
localVecQPInfo->grdNumPointsValid_ = numPoints;
}
@@ -179,37 +176,35 @@ namespace AMDiS {
return localVecQPInfo->grdAtQPs_;
}
+
WorldMatrix<double> *QPInfo::getD2AtQPs(const DOFVector<double>* vec,
int numPoints,
const FastQuadrature *quadFast)
{
// check fast quadrature
- if(quadFast) {
+ if (quadFast) {
TEST_EXIT_DBG(quadrature_ == quadFast->getQuadrature())
("quadrature_ != quadFast->quadrature\n");
}
// create new info if necessary
- if(vecQPInfos_[vec] == NULL) {
+ if (vecQPInfos_[vec] == NULL)
vecQPInfos_[vec] = new VecQPInfo;
- }
VecQPInfo *localVecQPInfo = vecQPInfos_[vec];
// update values if necessary
- if(localVecQPInfo->D2NumPointsValid_ < numPoints) {
+ if (localVecQPInfo->D2NumPointsValid_ < numPoints) {
// allocate memory if necessary
- if(localVecQPInfo->D2AtQPs_ == NULL) {
+ if (localVecQPInfo->D2AtQPs_ == NULL)
localVecQPInfo->D2AtQPs_ = new WorldMatrix<double>[numPoints_];
- }
// fill memory
vec->getD2AtQPs(currentElInfo_,
quadrature_,
quadFast,
- localVecQPInfo->D2AtQPs_,
- numPoints);
+ localVecQPInfo->D2AtQPs_);
localVecQPInfo->D2NumPointsValid_ = numPoints;
}
@@ -218,11 +213,12 @@ namespace AMDiS {
return localVecQPInfo->D2AtQPs_;
}
+
WorldVector<double> **QPInfo::getElementNormalAtQPs(int numPoints)
{
TEST_EXIT_DBG(currentElInfo_)("currentElInfo_ not set\n");
- if (currentElInfo_->getParametricOrder() > 1) {
+ if (currentElInfo_->getParametric()) {
if (!elementNormalAtQPs_) {
elementNormalAtQPs_ = new WorldVector<double>*[numPoints_];
for (int i = 0; i < numPoints_; i++)
@@ -231,8 +227,13 @@ namespace AMDiS {
if (elementNormalNumPointsValid_ < numPoints) {
for (int i = 0; i < numPoints; i++) {
- const DimVec<double>& lambda = quadrature_->getLambda(i);
- currentElInfo_->getElementNormal(*(elementNormalAtQPs_[i]), &lambda);
+ ERROR_EXIT("This does not work in the current AMDiS version!\n");
+ // Note on the following two lines of code:
+ // There is no AMDiS version with getElementNormal with these parameters.
+ // Maybe there were some AMDiS version before that implemented this
+ // functionality. Must be reimplemented, if we want to make it working.
+ // const DimVec<double>& lambda = quadrature_->getLambda(i);
+ // currentElInfo_->getElementNormal(*(elementNormalAtQPs_[i]), &lambda);
}
elementNormalNumPointsValid_ = numPoints;
}
@@ -250,11 +251,12 @@ namespace AMDiS {
}
}
+
DimVec<WorldVector<double> > **QPInfo::getGrdLambdaAtQPs(int numPoints)
{
TEST_EXIT_DBG(currentElInfo_)("currentElInfo_ not set\n");
- if (currentElInfo_->getParametricOrder() > 1) {
+ if (currentElInfo_->getParametric()) {
if (!grdLambdaAtQPs_) {
grdLambdaAtQPs_ = new DimVec<WorldVector<double> >*[numPoints_];
for (int i = 0; i < numPoints_; i++)
@@ -263,8 +265,13 @@ namespace AMDiS {
if (grdLambdaNumPointsValid_ < numPoints) {
for (int i = 0; i < numPoints; i++) {
- const DimVec<double>& lambda = quadrature_->getLambda(i);
- currentElInfo_->calcGrdLambda(*(grdLambdaAtQPs_[i]), &lambda);
+ ERROR_EXIT("This does not work in the current AMDiS version!\n");
+ // Note on the following two lines of code:
+ // There is no AMDiS version with getElementNormal with these parameters.
+ // Maybe there were some AMDiS version before that implemented this
+ // functionality. Must be reimplemented, if we want to make it working.
+ // const DimVec<double>& lambda = quadrature_->getLambda(i);
+ // currentElInfo_->calcGrdLambda(*(grdLambdaAtQPs_[i]), &lambda);
}
grdLambdaNumPointsValid_ = numPoints;
}
@@ -277,23 +284,25 @@ namespace AMDiS {
for (int i = 1; i < numPoints_; i++)
grdLambdaConst_[i] = grdLambdaConst_[0];
}
- currentElInfo_->calcGrdLambda(*(grdLambdaConst_[0]));
+ const_cast<ElInfo*>(currentElInfo_)->calcGrdLambda(*(grdLambdaConst_[0]));
return grdLambdaConst_;
}
}
+
QPInfo *QPInfo::provideQPInfo(const Quadrature *quad,
const FastQuadrature *quadFast)
{
- if(quadFast) {
- if(quad && (quad != quadFast->getQuadrature())) {
+ if (quadFast) {
+ if (quad && (quad != quadFast->getQuadrature())) {
ERROR_EXIT("quad != quadFast->quadrature\n");
} else {
quad = quadFast->getQuadrature();
}
}
- if(quad) {
- if(qpInfos_[quad]) return qpInfos_[quad];
+ if (quad) {
+ if (qpInfos_[quad])
+ return qpInfos_[quad];
QPInfo *newQPInfo = new QPInfo(quad);
qpInfos_[quad] = newQPInfo;
return newQPInfo;
@@ -302,29 +311,31 @@ namespace AMDiS {
}
}
+
void QPInfo::clearQPInfo(const Quadrature *quad,
const FastQuadrature *quadFast)
{
- if(quadFast) {
- if(quad && (quad != quadFast->getQuadrature())) {
+ if (quadFast) {
+ if (quad && (quad != quadFast->getQuadrature())) {
ERROR_EXIT("quad != quadFast->quadrature\n");
} else {
quad = quadFast->getQuadrature();
}
}
TEST_EXIT_DBG(quad)("no quadrature\n");
- if(qpInfos_[quad]) {
+ if (qpInfos_[quad]) {
delete qpInfos_[quad];
qpInfos_.erase(quad);
}
}
+
void QPInfo::clearAllQPInfos()
{
std::map<const Quadrature*, QPInfo*>::iterator
it, itEnd = qpInfos_.end();
- for(it = qpInfos_.begin(); it != itEnd; ++it) {
+ for (it = qpInfos_.begin(); it != itEnd; ++it) {
delete it->second;
qpInfos_.erase(it);
}
diff --git a/AMDiS/src/QPInfo.h b/AMDiS/src/QPInfo.h
index 4a8b3d5c..65b42b70 100644
--- a/AMDiS/src/QPInfo.h
+++ b/AMDiS/src/QPInfo.h
@@ -29,29 +29,23 @@
namespace AMDiS {
- /** \brief
- * Stores informations at quadrature points of the current element.
- */
+ /// Stores informations at quadrature points of the current element.
class QPInfo
{
public:
- /** \brief
- * Sets \ref currentElInfo_ to elInfo and all valid flags to false.
- */
+ /// Sets \ref currentElInfo_ to elInfo and all valid flags to false.
void initElement(const ElInfo *elInfo);
- /** \brief
- * Returns coordinates at quadrature points.
- */
+ /// Returns coordinates at quadrature points.
WorldVector<double> *getCoordsAtQPs(int numPoints);
/** \brief
* Returns vector values at quadrature points. If quadFast is set it will be
* used for a more efficient evaluation.
*/
- double *getVecAtQPs(const DOFVector<double>*,
- int numPoints,
- const FastQuadrature *quadFast = NULL);
+ mtl::dense_vector<double>& getVecAtQPs(const DOFVector<double>*,
+ int numPoints,
+ const FastQuadrature *quadFast = NULL);
/** \brief
* Returns gradient values at quadrature points. If quadFast is set it will be
@@ -70,155 +64,98 @@ namespace AMDiS {
const FastQuadrature *quadFast = NULL);
- /** \brief
- * Returns element normals at quadrature points.
- */
+ /// Returns element normals at quadrature points.
WorldVector<double> **getElementNormalAtQPs(int numPoints);
- /** \brief
- *
- */
+ ///
DimVec<WorldVector<double> > **getGrdLambdaAtQPs(int numPoints);
- /** \brief
- * Returns a QPInfo instance for the given quadrature.
- */
+ /// Returns a QPInfo instance for the given quadrature.
static QPInfo *provideQPInfo(const Quadrature*, const FastQuadrature*);
- /** \brief
- * Deletes the QPInfo instance for the given quadrature.
- */
+ /// Deletes the QPInfo instance for the given quadrature.
static void clearQPInfo(const Quadrature*, const FastQuadrature*);
- /** \brief
- * Deletes all QPInfo instances.
- */
+ /// Deletes all QPInfo instances.
static void clearAllQPInfos();
protected:
- /** \brief
- * Constructor. Called by \ref provideQPInfo().
- */
+ /// Constructor. Called by \ref provideQPInfo().
QPInfo(const Quadrature*);
- /** \brief
- * Destructor. Called by \ref clearQPInfo() and \ref clearAllQPInfos().
- */
+ /// Destructor. Called by \ref clearQPInfo() and \ref clearAllQPInfos().
~QPInfo();
protected:
- /** \brief
- * Structure which stores infos about one DOFVector.
- */
+ /// Structure which stores infos about one DOFVector.
class VecQPInfo
{
public:
- /** \brief
- * Constructor.
- */
+ /// Constructor.
VecQPInfo()
- : valAtQPs_(NULL),
- grdAtQPs_(NULL),
+ : grdAtQPs_(NULL),
D2AtQPs_(NULL),
valNumPointsValid_(0),
grdNumPointsValid_(0),
D2NumPointsValid_(0)
{}
- /** \brief
- * Values at quadrature points
- */
- double *valAtQPs_;
+ /// Values at quadrature points.
+ mtl::dense_vector<double> valAtQPs;
- /** \brief
- * Gradients at quadrature points
- */
+ /// Gradients at quadrature points
WorldVector<double> *grdAtQPs_;
- /** \brief
- * D2 at quadrature points
- */
+ /// D2 at quadrature points
WorldMatrix<double> *D2AtQPs_;
- /** \brief
- * valid flag for values
- */
+ /// valid flag for values
int valNumPointsValid_;
- /** \brief
- * valid flag for gradients
- */
+ /// valid flag for gradients
int grdNumPointsValid_;
- /** \brief
- * valid flag for D2
- */
+ /// valid flag for D2
bool D2NumPointsValid_;
};
- /** \brief
- * Quadrature of this QPInfo
- */
+ /// Quadrature of this QPInfo
const Quadrature *quadrature_;
- /** \brief
- * Set to \ref quadrature_->getNumPoints().
- */
+ /// Set to \ref quadrature_->getNumPoints().
int numPoints_;
- /** \brief
- * ElInfo of the current element
- */
+ /// ElInfo of the current element
const ElInfo *currentElInfo_;
- /** \brief
- * Coords at quadrature points
- */
+ /// Coords at quadrature points
WorldVector<double> *coordsAtQPs_;
- /** \brief
- * Valid flag for coords
- */
+ /// Valid flag for coords
int coordsNumPointsValid_;
- /** \brief
- * Map of all vector infos
- */
+ /// Map of all vector infos
std::map<const DOFVector<double>*, VecQPInfo*> vecQPInfos_;
- /** \brief
- * element normal at quadrature points (array of pointers)
- */
+ /// element normal at quadrature points (array of pointers)
WorldVector<double> **elementNormalAtQPs_;
- /** \brief
- * for constant values at all QPs (all entries point to same memory)
- */
+ /// for constant values at all QPs (all entries point to same memory)
WorldVector<double> **elementNormalConst_;
- /** \brief
- * valid flag for element normals
- */
+ /// valid flag for element normals
int elementNormalNumPointsValid_;
- /** \brief
- * gradient of barycentric coordinates at QPs (array of pointers)
- */
+ /// gradient of barycentric coordinates at QPs (array of pointers)
DimVec<WorldVector<double> > **grdLambdaAtQPs_;
- /** \brief
- * for constant values at all QPs (all entries point to same memory)
- */
+ /// for constant values at all QPs (all entries point to same memory)
DimVec<WorldVector<double> > **grdLambdaConst_;
- /** \brief
- * number of valid points of grdLambdaAtQPs_
- */
+ /// number of valid points of grdLambdaAtQPs_
int grdLambdaNumPointsValid_;
- /** \brief
- * Static map of all QPInfos. Used by \ref provideQPInfo().
- */
+ /// Static map of all QPInfos. Used by \ref provideQPInfo().
static std::map<const Quadrature*, QPInfo*> qpInfos_;
};
diff --git a/AMDiS/src/SMIAdapter.cc b/AMDiS/src/SMIAdapter.cc
deleted file mode 100644
index 6c3d6320..00000000
--- a/AMDiS/src/SMIAdapter.cc
+++ /dev/null
@@ -1,676 +0,0 @@
-//
-// Software License for AMDiS
-//
-// Copyright (c) 2010 Dresden University of Technology
-// All rights reserved.
-// Authors: Simon Vey, Thomas Witkowski et al.
-//
-// This file is part of AMDiS
-//
-// See also license.opensource.txt in the distribution.
-
-
-#include "SMIAdapter.h"
-#include "Mesh.h"
-#include "Traverse.h"
-#include "ElInfo.h"
-#include "Flag.h"
-#include "FiniteElemSpace.h"
-#include "BasisFunction.h"
-#include "DOFVector.h"
-#include "DOFAdmin.h"
-#include "ElementRegion_ED.h"
-#include "SurfaceRegion_ED.h"
-#include "Flag.h"
-
-namespace AMDiS {
-
- SMIAdapter::SMIAdapter(int smiApplicationId,
- int smiMeshId,
- FiniteElemSpace *feSpace,
- int elementRegion,
- int surfaceRegion,
- bool (*elementFct)(ElInfo *elInfo),
- bool (*surfaceFct)(ElInfo *elInfo, int side))
- : smiApplicationId_(smiApplicationId),
- smiMeshId_(smiMeshId),
- feSpace_(feSpace),
- elementRegion_(elementRegion),
- surfaceRegion_(surfaceRegion),
- addNeighbourInfo_(false),
- newNodeIndex_(NULL),
- oldNodeIndex_(NULL),
- newElementIndex_(NULL),
- oldElementIndex_(NULL),
- elementFct_(elementFct),
- surfaceFct_(surfaceFct)
- {
- TEST_EXIT(!surfaceFct_)("surfaceFct not yet supported\n");
- TEST_EXIT(elementFct_ == NULL || elementRegion_ == -1)
- ("don't use elementRegion AND elementFct\n");
-
- Mesh *mesh = feSpace_->getMesh();
- int dim = mesh->getDim();
-
- if(surfaceRegion > -1) {
- dim -= 1;
- }
-
- TEST_EXIT(dim > 0 && dim < 4)("invalid dim\n");
-
- elementType_ = dim * 10 + 1; // linear elements only
-
- int smiError = SMI_Add_application(smiApplicationId_,
- SMI_APP_MODE_DEFAULT);
-
- smiError = SMI_Add_mesh(smiApplicationId_,
- smiMeshId_, SMI_MESH_MODE_DEFAULT);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Add_mesh() failed with error %d\n", smiError);
-
- smiError = SMI_Begin_write_transaction(smiApplicationId_,
- smiMeshId_);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Begin_modification() failed with error %d\n", smiError);
-
- smiError = SMI_Add_elem_type(smiApplicationId_,
- smiMeshId_,
- elementType_,
- dim + 1);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Add_elem_type() failed with error %d\n", smiError);
-
- smiError = SMI_End_write_transaction(smiApplicationId_,
- smiMeshId_);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_End_modification() failed with error %d\n", smiError);
- }
-
- void SMIAdapter::addQuantity(int quantityId, DOFVector<double> *dofVector) {
- TEST_EXIT(dofVectors_[quantityId].size() == 0)
- ("quantityId already added\n");
-
- dofVectors_[quantityId].push_back(dofVector);
-
- static double defaultValue = 0.0;
-
- int smiError;
-
- smiError = SMI_Begin_write_transaction(smiApplicationId_,
- smiMeshId_);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Begin_modification() failed with error %d\n", smiError);
-
- smiError = SMI_Add_quantity(smiApplicationId_,
- smiMeshId_,
- quantityId,
- SMI_LOC_NODE,
- SMI_TYPE_DOUBLE,
- 1,
- &defaultValue);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Add_quantity faild with error %d\n", smiError);
-
- smiError = SMI_End_write_transaction(smiApplicationId_,
- smiMeshId_);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_End_modification() failed with error %d\n", smiError);
- }
-
- void SMIAdapter::addQuantity(int quantityId,
- int quantityDim,
- DOFVector<double> **dofVector)
- {
- TEST_EXIT(dofVectors_[quantityId].size() == 0)
- ("quantityId already added\n");
-
- dofVectors_[quantityId].resize(quantityDim);
-
- int comp;
- for(comp = 0; comp < quantityDim; comp++) {
- dofVectors_[quantityId][comp] = dofVector[comp];
- }
-
- TEST_EXIT(quantityDim < 4)("quantityDim > 3\n");
-
- static double defaultValue[3] = {0.0, 0.0, 0.0};
-
- int smiError;
-
- smiError = SMI_Begin_write_transaction(smiApplicationId_,
- smiMeshId_);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Begin_modification() failed with error %d\n", smiError);
-
- smiError = SMI_Add_quantity(smiApplicationId_,
- smiMeshId_,
- quantityId,
- SMI_LOC_NODE,
- SMI_TYPE_DOUBLE,
- quantityDim,
- defaultValue);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Add_quantity faild with error %d\n", smiError);
-
- smiError = SMI_End_write_transaction(smiApplicationId_,
- smiMeshId_);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_End_modification() failed with error %d\n", smiError);
- }
-
- void SMIAdapter::transferMeshToSMI()
- {
- int smiError = SMI_Begin_write_transaction(smiApplicationId_,
- smiMeshId_);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Begin_modification() failed with error %d\n", smiError);
-
- smiError = SMI_Clear_mesh(smiApplicationId_,
- smiMeshId_);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Clear_mesh() failed with error %d\n", smiError);
-
- int i, j;
- Mesh *mesh = feSpace_->getMesh();
- int dim = mesh->getDim();
- DOFAdmin *admin = feSpace_->getAdmin();
- const BasisFunction *basFcts = feSpace_->getBasisFcts();
- int numBasFcts = basFcts->getNumber();
-
- Element *element;
- ElementData *elementData;
- ElementData *regionData;
- int region;
- int side;
- int numNewNodes;
- int numNodes;
- bool validElement;
- double *nodeCoords = new double[numBasFcts * dim];
-
- DOFVector<char> alreadyAdded(feSpace_, "already added nodes");
- alreadyAdded.set(0);
-
- int elementCounter[1] = { 0 };
- int elementIndex;
-
- DimVec<double> *bary = NULL;
- WorldVector<double> world;
-
- const DegreeOfFreedom *elementDofs = NULL;
- DegreeOfFreedom dof;
- DegreeOfFreedom *nodeIndices = new int[numBasFcts];
- DegreeOfFreedom *newNodeIndices = new int[numBasFcts];
-
- Flag fillFlag = Mesh::CALL_LEAF_EL | Mesh::FILL_COORDS;
-
- if(addNeighbourInfo_) {
- fillFlag |= Mesh::FILL_NEIGH;
- }
-
- TraverseStack stack;
- ElInfo *elInfo = stack.traverseFirst(mesh, -1, fillFlag);
-
- while(elInfo) {
-
- element = elInfo->getElement();
- elementData = element->getElementData();
- elementDofs = basFcts->getLocalIndices(element, admin, NULL);
-
- // check element region
- if(elementRegion_ > -1) {
- regionData = elementData->getElementData(ELEMENT_REGION);
- if(regionData) {
- region = dynamic_cast<ElementRegion_ED*>(regionData)->getRegion();
- } else {
- region = -1;
- }
- validElement = (region == elementRegion_);
- } else {
- validElement = true;
- }
-
- if(elementFct_) {
- validElement = (*elementFct_)(elInfo);
- }
-
- if(validElement) {
-
- // check surface region
- if(surfaceRegion_ > -1) {
- regionData = elementData->getElementData(SURFACE_REGION);
- while(regionData) {
- region = dynamic_cast<SurfaceRegion_ED*>(regionData)->getRegion();
-
- // surface region found ?
- if(region == surfaceRegion_) {
- // add surface element
- side = dynamic_cast<SurfaceRegion_ED*>(regionData)->getSide();
- numNewNodes = 0;
- numNodes = 0;
- for(i = 0; i < numBasFcts; i++) {
- bary = basFcts->getCoords(i);
- if((*bary)[side] == 0) {
- dof = elementDofs[i];
-
- if(newNodeIndex_) {
- dof = (*(newNodeIndex_))[dof] - 1;
- TEST_EXIT(dof >= 0)("invalid node index\n");
- }
-
- if(!alreadyAdded[dof]) {
- newNodeIndices[numNewNodes] = dof;
- elInfo->coordToWorld(*bary, world);
- for(j = 0; j < dim; j++) {
- nodeCoords[numNewNodes * dim + j] = world[j];
- }
- numNewNodes++;
- alreadyAdded[dof] = 1;
- }
- nodeIndices[numNodes] = dof;
- numNodes++;
- }
- }
-
- smiError = SMI_Add_nodes(smiApplicationId_,
- smiMeshId_,
- numNewNodes,
- newNodeIndices,
- nodeCoords,
- dim);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Add_nodes faild with error %d\n", smiError);
-
- smiError = SMI_Add_elems(smiApplicationId_,
- smiMeshId_,
- 1,
- &elementType_,
- dim+1,
- nodeIndices,
- elementCounter);
-
- (elementCounter[0])++;
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Add_elems faild with error %d\n", smiError);
- }
- regionData = regionData->getDecorated(SURFACE_REGION);
- }
- } else {
- // add volume element
-
-
- numNewNodes = 0;
- for(i = 0; i < numBasFcts; i++) {
- bary = basFcts->getCoords(i);
- dof = elementDofs[i];
-
- if(newNodeIndex_) {
- dof = (*(newNodeIndex_))[dof] - 1;
- TEST_EXIT(dof >= 0)("invalid node index\n");
- }
-
- if(!alreadyAdded[dof]) {
- newNodeIndices[numNewNodes] = dof;
- elInfo->coordToWorld(*bary, world);
- for(j = 0; j < dim; j++) {
- nodeCoords[numNewNodes * dim + j] = world[j];
- }
- numNewNodes++;
- alreadyAdded[dof] = 1;
- }
- }
-
- smiError = SMI_Add_nodes(smiApplicationId_,
- smiMeshId_,
- numNewNodes,
- newNodeIndices,
- nodeCoords,
- dim);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Add_nodes faild with error %d\n", smiError);
-
- elementIndex = element->getIndex();
-
- if(newElementIndex_) {
- elementIndex = (*(newElementIndex_))[elementIndex] - 1;
- TEST_EXIT(elementIndex >= 0)("invalid element index\n");
- }
-
- smiError = SMI_Add_elems(smiApplicationId_,
- smiMeshId_,
- 1,
- &elementType_,
- dim+1,
- const_cast<int*>(elementDofs),
- &elementIndex);
-
- if(addNeighbourInfo_) {
- DimVec<int> neighbours(dim, NO_INIT);
- DimVec<int> oppVertices(dim, NO_INIT);
- for(i = 0; i < dim + 1; i++) {
- if(elInfo->getNeighbour(i)) {
- neighbours[i] = elInfo->getNeighbour(i)->getIndex();
- if(newElementIndex_) {
- neighbours[i] = (*(newElementIndex_))[neighbours[i]] - 1;
- TEST_EXIT(neighbours[i] >= 0)("invalid element index\n");
- }
- oppVertices[i] = elInfo->getOppVertex(i);
- } else {
- neighbours[i] = -1;
- oppVertices[i] = -1;
- }
- }
- SMI_Set_quantity_values(smiApplicationId_,
- smiMeshId_,
- SMI_NEIGH_QUANTITY,
- SMI_TYPE_INT,
- dim+1,
- 1,
- &elementIndex,
- neighbours.getValArray());
- SMI_Set_quantity_values(smiApplicationId_,
- smiMeshId_,
- SMI_OPP_V_QUANTITY,
- SMI_TYPE_INT,
- dim+1,
- 1,
- &elementIndex,
- oppVertices.getValArray());
- }
-
-
- (elementCounter[0])++;
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Add_elems faild with error %d\n", smiError);
- }
- }
-
- elInfo = stack.traverseNext(elInfo);
- }
-
- delete [] nodeCoords;
- delete [] nodeIndices;
- delete [] newNodeIndices;
-
- smiError = SMI_End_write_transaction(smiApplicationId_, smiMeshId_);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_End_modification() failed with error %d\n", smiError);
- }
-
- void SMIAdapter::transferQuantitiesToSMI(int quantityID)
- {
- int smiError;
-
- smiError = SMI_Begin_write_transaction(smiApplicationId_,
- smiMeshId_);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Begin_modification() failed with error %d\n", smiError);
-
- int numNodes;
- int *nodeIndices;
-
- smiError = SMI_Get_all_nodes(smiApplicationId_,
- smiMeshId_,
- &numNodes,
- &nodeIndices);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Get_all_nodes() failed with error %d\n", smiError);
-
- if (quantityID == -1) {
- std::map<int, std::vector<DOFVector<double>*> >::iterator quantityIt;
- std::map<int, std::vector<DOFVector<double>*> >::iterator quantityEnd =
- dofVectors_.end();
-
- for(quantityIt = dofVectors_.begin(); quantityIt != quantityEnd; ++quantityIt) {
- int quantityDim = static_cast<int>(quantityIt->second.size());
-
- double *values = new double[numNodes * quantityDim];
-
- int i, comp;
- for(i = 0; i < numNodes; i++) {
- DegreeOfFreedom index = nodeIndices[i];
- if(oldNodeIndex_) {
- index = (*(oldNodeIndex_))[index] - 1;
- }
- for(comp = 0; comp < quantityDim; comp++) {
- DOFVector<double> *dofVector = (quantityIt->second)[comp];
- values[i * quantityDim + comp] = (*dofVector)[index];
- }
- }
-
- smiError = SMI_Set_quantity_values(smiApplicationId_,
- smiMeshId_,
- (*quantityIt).first,
- SMI_TYPE_DOUBLE,
- quantityDim,
- numNodes,
- nodeIndices,
- values);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Set_quantity_values() failed with error %d\n", smiError);
-
- delete [] values;
- }
- } else {
- int quantityDim = static_cast<int>(dofVectors_[quantityID].size());
-
- double *values = new double[numNodes * quantityDim];
-
- int i, comp;
- for(i = 0; i < numNodes; i++) {
- DegreeOfFreedom index = nodeIndices[i];
- if(oldNodeIndex_) {
- index = (*(oldNodeIndex_))[index] - 1;
- }
- for(comp = 0; comp < quantityDim; comp++) {
- DOFVector<double> *dofVector = dofVectors_[quantityID][comp];
- values[i*quantityDim + comp] = (*dofVector)[index];
- }
- }
-
- smiError = SMI_Set_quantity_values(smiApplicationId_,
- smiMeshId_,
- quantityID,
- SMI_TYPE_DOUBLE,
- quantityDim,
- numNodes,
- nodeIndices,
- values);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Set_quantity_values() failed with error %d\n", smiError);
-
- delete [] values;
- }
-
- smiError = SMI_End_write_transaction(smiApplicationId_, smiMeshId_);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_End_modification() failed with error %d\n", smiError);
- }
-
- void SMIAdapter::getQuantitiesFromSMI(int quantityID)
- {
- int smiError;
-
- smiError = SMI_Begin_read_transaction(smiApplicationId_,
- smiMeshId_);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Begin_modification() failed with error %d\n", smiError);
-
- int numNodes;
- int *nodeIndices;
-
- smiError = SMI_Get_all_nodes(smiApplicationId_,
- smiMeshId_,
- &numNodes,
- &nodeIndices);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Get_all_nodes() failed with error %d\n", smiError);
-
- if (quantityID == -1) {
- std::map<int, std::vector<DOFVector<double>*> >::iterator quantityIt;
- std::map<int, std::vector<DOFVector<double>*> >::iterator quantityEnd =
- dofVectors_.end();
- for(quantityIt = dofVectors_.begin(); quantityIt != quantityEnd; ++quantityIt) {
- int quantityDim = static_cast<int>(quantityIt->second.size());
-
- double *values = new double[numNodes * quantityDim];
-
- smiError = SMI_Get_quantity_values(smiApplicationId_,
- smiMeshId_,
- (*quantityIt).first,
- SMI_TYPE_DOUBLE,
- quantityDim,
- numNodes,
- nodeIndices,
- values);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Set_quantity_values() failed with error %d\n", smiError);
-
- int i, comp;
- for(i = 0; i < numNodes; i++) {
- DegreeOfFreedom index = nodeIndices[i];
- if(oldNodeIndex_) {
- index = (*(oldNodeIndex_))[index] - 1;
- }
- for(comp = 0; comp < quantityDim; comp++) {
- DOFVector<double> *dofVector = (quantityIt->second)[comp];
- (*dofVector)[index] = values[i * quantityDim + comp];
- }
- }
-
- delete [] values;
- }
- } else {
- int quantityDim = static_cast<int>(dofVectors_[quantityID].size());
-
- double *values = new double[numNodes * quantityDim];
-
- smiError = SMI_Get_quantity_values(smiApplicationId_,
- smiMeshId_,
- quantityID,
- SMI_TYPE_DOUBLE,
- quantityDim,
- numNodes,
- nodeIndices,
- values);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_Set_quantity_values() failed with error %d\n", smiError);
-
- int i, comp;
- for(i = 0; i < numNodes; i++) {
- DegreeOfFreedom index = nodeIndices[i];
- if(oldNodeIndex_) {
- index = (*(oldNodeIndex_))[index] - 1;
- }
- for(comp = 0; comp < quantityDim; comp++) {
- DOFVector<double> *dofVector = dofVectors_[quantityID][comp];
- (*dofVector)[index] = values[i * quantityDim + comp];
- }
- }
-
- delete [] values;
- }
-
- smiError = SMI_End_read_transaction(smiApplicationId_, smiMeshId_);
-
- TEST_EXIT(smiError == SMI_OK)
- ("SMI_End_modification() failed with error %d\n", smiError);
- }
-
- void SMIAdapter::addNeighbourInfo()
- {
- TEST_EXIT(surfaceRegion_ == -1)
- ("no neighbour info available for surface meshes\n");
-
- int dim = feSpace_->getMesh()->getDim();
-
- if(SMI_OK != SMI_Get_quantity_info(smiApplicationId_,
- smiMeshId_,
- SMI_NEIGH_QUANTITY,
- NULL, NULL, NULL))
- {
- int defaultValue[3] = {-1, -1, -1};
-
- SMI_Begin_write_transaction(smiApplicationId_,
- smiMeshId_);
-
- SMI_Add_quantity(smiApplicationId_,
- smiMeshId_,
- SMI_NEIGH_QUANTITY,
- SMI_LOC_ELEM,
- SMI_TYPE_INT,
- dim+1,
- defaultValue);
-
- SMI_Add_quantity(smiApplicationId_,
- smiMeshId_,
- SMI_OPP_V_QUANTITY,
- SMI_LOC_ELEM,
- SMI_TYPE_INT,
- dim+1,
- defaultValue);
-
- SMI_End_write_transaction(smiApplicationId_,
- smiMeshId_);
- }
-
- addNeighbourInfo_ = true;
- }
-
- void SMIAdapter::getNeighbourInfo(int elementIndex,
- int *neighbours,
- int *oppVertices)
- {
- int i, dim = feSpace_->getMesh()->getDim();
-
- TEST_EXIT(addNeighbourInfo_)("no neighbour info added\n");
- SMI_Get_quantity_values(smiApplicationId_,
- smiMeshId_,
- SMI_NEIGH_QUANTITY,
- SMI_TYPE_INT,
- dim+1,
- 1,
- &elementIndex,
- neighbours);
- SMI_Get_quantity_values(smiApplicationId_,
- smiMeshId_,
- SMI_OPP_V_QUANTITY,
- SMI_TYPE_INT,
- dim+1,
- 1,
- &elementIndex,
- oppVertices);
-
- if(oldElementIndex_) {
- for(i = 0; i < dim + 1; i++) {
- neighbours[i] = (*(oldElementIndex_))[neighbours[i]] - 1;
- }
- }
- }
-
-}
diff --git a/AMDiS/src/SMIAdapter.h b/AMDiS/src/SMIAdapter.h
deleted file mode 100644
index 5f6bbe6d..00000000
--- a/AMDiS/src/SMIAdapter.h
+++ /dev/null
@@ -1,133 +0,0 @@
-// ============================================================================
-// == ==
-// == AMDiS - Adaptive multidimensional simulations ==
-// == ==
-// == http://www.amdis-fem.org ==
-// == ==
-// ============================================================================
-//
-// Software License for AMDiS
-//
-// Copyright (c) 2010 Dresden University of Technology
-// All rights reserved.
-// Authors: Simon Vey, Thomas Witkowski et al.
-//
-// This file is part of AMDiS
-//
-// See also license.opensource.txt in the distribution.
-
-
-
-/** \file SMIAdapter.h */
-
-#ifndef AMDIS_SMIADAPTER_H
-#define AMDIS_SMIADAPTER_H
-
-#include <map>
-#include <vector>
-#include "Global.h"
-#include "smi.h"
-#include "AMDiS_fwd.h"
-#include "Flag.h"
-
-namespace AMDiS {
-
-#define SMI_NEIGH_QUANTITY 10001
-#define SMI_OPP_V_QUANTITY 20002
-
- /// SMI adapter for an AMDiS mesh.
- class SMIAdapter
- {
- public:
- /// constructor
- SMIAdapter(int smiApplicationId,
- int smiMeshId,
- FiniteElemSpace *feSpace,
- int elementRegion = -1,
- int surfaceRegion = -1,
- bool (*elementFct)(ElInfo *elInfo) = NULL,
- bool (*surfaceFct)(ElInfo *elInfo, int side) = NULL);
-
- /// destructor
- virtual ~SMIAdapter() {}
-
- /// Add DOFVector<double> as smi quantity.
- void addQuantity(int quantityId, DOFVector<double> *dofVector);
-
- /// Add DOFVector<double> as smi quantity.
- void addQuantity(int quantityId, int quantityDim, DOFVector<double> **dofVector);
-
- /** \brief
- * If called before the first call of \ref transferMeshToSMI()
- * neighbourhood information are stored in SMI as quantities.
- */
- void addNeighbourInfo();
-
- /** \brief
- * Get neighbourhood information about the element.
- * \param neighbours array of the neighbour element indices
- * \param oppVertices array of the corresponding opp vertices
- */
- void getNeighbourInfo(int elementIndex, int *neighbours, int *oppVertices);
-
- /// Transfer mesh data from AMDiS to SMI.
- void transferMeshToSMI();
-
- /// Transfer quantity values from AMDiS to SMI.
- void transferQuantitiesToSMI(int quantityID = -1);
-
- /// Transfer quantity values from SMI to AMDiS.
- void getQuantitiesFromSMI(int quantityID = -1);
-
- void setIndexMappings(std::map<DegreeOfFreedom, DegreeOfFreedom> *newNodeIndex,
- std::map<DegreeOfFreedom, DegreeOfFreedom> *oldNodeIndex,
- std::map<int, int> *newElementIndex,
- std::map<int, int> *oldElementIndex)
- {
- newNodeIndex_ = newNodeIndex;
- oldNodeIndex_ = oldNodeIndex;
- newElementIndex_ = newElementIndex;
- oldElementIndex_ = oldElementIndex;
- }
-
- protected:
- ///SMI application id
- int smiApplicationId_;
-
- /// SMI mesh id
- int smiMeshId_;
-
- /// FeSpace containing the mesh
- FiniteElemSpace *feSpace_;
-
- /// smi element type of all elements in the mesh
- int elementType_;
-
- /// mapping from quantity ids to DOFVector pointers
- std::map<int, std::vector<DOFVector<double>*> > dofVectors_;
-
- /// element region the adapter is defined on
- int elementRegion_;
-
- /// surface region the adapter is defined on
- int surfaceRegion_;
-
- /// store neighbourhood information?
- bool addNeighbourInfo_;
-
- std::map<DegreeOfFreedom, DegreeOfFreedom> *newNodeIndex_;
-
- std::map<DegreeOfFreedom, DegreeOfFreedom> *oldNodeIndex_;
-
- std::map<int, int> *newElementIndex_;
-
- std::map<int, int> *oldElementIndex_;
-
- bool (*elementFct_)(ElInfo*);
-
- bool (*surfaceFct_)(ElInfo*, int);
- };
-
-}
-
-#endif
diff --git a/AMDiS/compositeFEM/src/CFE_Integration.cc b/AMDiS/src/compositeFEM/CFE_Integration.cc
similarity index 100%
rename from AMDiS/compositeFEM/src/CFE_Integration.cc
rename to AMDiS/src/compositeFEM/CFE_Integration.cc
diff --git a/AMDiS/compositeFEM/src/CFE_Integration.h b/AMDiS/src/compositeFEM/CFE_Integration.h
similarity index 100%
rename from AMDiS/compositeFEM/src/CFE_Integration.h
rename to AMDiS/src/compositeFEM/CFE_Integration.h
diff --git a/AMDiS/compositeFEM/src/CFE_NormAndErrorFcts.cc b/AMDiS/src/compositeFEM/CFE_NormAndErrorFcts.cc
similarity index 100%
rename from AMDiS/compositeFEM/src/CFE_NormAndErrorFcts.cc
rename to AMDiS/src/compositeFEM/CFE_NormAndErrorFcts.cc
diff --git a/AMDiS/compositeFEM/src/CFE_NormAndErrorFcts.h b/AMDiS/src/compositeFEM/CFE_NormAndErrorFcts.h
similarity index 100%
rename from AMDiS/compositeFEM/src/CFE_NormAndErrorFcts.h
rename to AMDiS/src/compositeFEM/CFE_NormAndErrorFcts.h
diff --git a/AMDiS/compositeFEM/src/CompositeFEMMethods.cc b/AMDiS/src/compositeFEM/CompositeFEMMethods.cc
similarity index 100%
rename from AMDiS/compositeFEM/src/CompositeFEMMethods.cc
rename to AMDiS/src/compositeFEM/CompositeFEMMethods.cc
diff --git a/AMDiS/compositeFEM/src/CompositeFEMMethods.h b/AMDiS/src/compositeFEM/CompositeFEMMethods.h
similarity index 100%
rename from AMDiS/compositeFEM/src/CompositeFEMMethods.h
rename to AMDiS/src/compositeFEM/CompositeFEMMethods.h
diff --git a/AMDiS/compositeFEM/src/CompositeFEMOperator.cc b/AMDiS/src/compositeFEM/CompositeFEMOperator.cc
similarity index 100%
rename from AMDiS/compositeFEM/src/CompositeFEMOperator.cc
rename to AMDiS/src/compositeFEM/CompositeFEMOperator.cc
diff --git a/AMDiS/compositeFEM/src/CompositeFEMOperator.h b/AMDiS/src/compositeFEM/CompositeFEMOperator.h
similarity index 100%
rename from AMDiS/compositeFEM/src/CompositeFEMOperator.h
rename to AMDiS/src/compositeFEM/CompositeFEMOperator.h
diff --git a/AMDiS/compositeFEM/src/ElementLevelSet.cc b/AMDiS/src/compositeFEM/ElementLevelSet.cc
similarity index 100%
rename from AMDiS/compositeFEM/src/ElementLevelSet.cc
rename to AMDiS/src/compositeFEM/ElementLevelSet.cc
diff --git a/AMDiS/compositeFEM/src/ElementLevelSet.h b/AMDiS/src/compositeFEM/ElementLevelSet.h
similarity index 100%
rename from AMDiS/compositeFEM/src/ElementLevelSet.h
rename to AMDiS/src/compositeFEM/ElementLevelSet.h
diff --git a/AMDiS/compositeFEM/src/LevelSetAdaptMesh.cc b/AMDiS/src/compositeFEM/LevelSetAdaptMesh.cc
similarity index 100%
rename from AMDiS/compositeFEM/src/LevelSetAdaptMesh.cc
rename to AMDiS/src/compositeFEM/LevelSetAdaptMesh.cc
diff --git a/AMDiS/compositeFEM/src/LevelSetAdaptMesh.h b/AMDiS/src/compositeFEM/LevelSetAdaptMesh.h
similarity index 100%
rename from AMDiS/compositeFEM/src/LevelSetAdaptMesh.h
rename to AMDiS/src/compositeFEM/LevelSetAdaptMesh.h
diff --git a/AMDiS/compositeFEM/src/PenaltyOperator.cc b/AMDiS/src/compositeFEM/PenaltyOperator.cc
similarity index 100%
rename from AMDiS/compositeFEM/src/PenaltyOperator.cc
rename to AMDiS/src/compositeFEM/PenaltyOperator.cc
diff --git a/AMDiS/compositeFEM/src/PenaltyOperator.h b/AMDiS/src/compositeFEM/PenaltyOperator.h
similarity index 100%
rename from AMDiS/compositeFEM/src/PenaltyOperator.h
rename to AMDiS/src/compositeFEM/PenaltyOperator.h
diff --git a/AMDiS/compositeFEM/src/SubElementAssembler.cc b/AMDiS/src/compositeFEM/SubElementAssembler.cc
similarity index 100%
rename from AMDiS/compositeFEM/src/SubElementAssembler.cc
rename to AMDiS/src/compositeFEM/SubElementAssembler.cc
diff --git a/AMDiS/compositeFEM/src/SubElementAssembler.h b/AMDiS/src/compositeFEM/SubElementAssembler.h
similarity index 100%
rename from AMDiS/compositeFEM/src/SubElementAssembler.h
rename to AMDiS/src/compositeFEM/SubElementAssembler.h
diff --git a/AMDiS/compositeFEM/src/SubPolytope.cc b/AMDiS/src/compositeFEM/SubPolytope.cc
similarity index 100%
rename from AMDiS/compositeFEM/src/SubPolytope.cc
rename to AMDiS/src/compositeFEM/SubPolytope.cc
diff --git a/AMDiS/compositeFEM/src/SubPolytope.h b/AMDiS/src/compositeFEM/SubPolytope.h
similarity index 100%
rename from AMDiS/compositeFEM/src/SubPolytope.h
rename to AMDiS/src/compositeFEM/SubPolytope.h
diff --git a/AMDiS/compositeFEM/src/TranslateLsFct.h b/AMDiS/src/compositeFEM/TranslateLsFct.h
similarity index 100%
rename from AMDiS/compositeFEM/src/TranslateLsFct.h
rename to AMDiS/src/compositeFEM/TranslateLsFct.h
diff --git a/AMDiS/compositeFEM/src/compositeFEM.h b/AMDiS/src/compositeFEM/compositeFEM.h
similarity index 100%
rename from AMDiS/compositeFEM/src/compositeFEM.h
rename to AMDiS/src/compositeFEM/compositeFEM.h
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