diff --git a/AMDiS/Makefile.am b/AMDiS/Makefile.am
index a57b5e3b862a204334703ce48a8206f35d2537fd..c6b8f6fb726f579fc8bbbf13daaf9943af373a94 100644
--- a/AMDiS/Makefile.am
+++ b/AMDiS/Makefile.am
@@ -1,3 +1 @@
-SUBDIRS = lib bin
-
-EXTRA_DIST = demo
+SUBDIRS = src lib
diff --git a/AMDiS/Makefile.in b/AMDiS/Makefile.in
index 4389e9635f6e4807a61d63e5c7cbf531dbea8ee1..9fd03baf07e41e7f9da9ea03c0ebd845d43e5230 100644
--- a/AMDiS/Makefile.in
+++ b/AMDiS/Makefile.in
@@ -142,6 +142,7 @@ PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PETSC_DIR = @PETSC_DIR@
 RANLIB = @RANLIB@
+SED = @SED@
 SET_MAKE = @SET_MAKE@
 SHELL = @SHELL@
 STRIP = @STRIP@
@@ -193,8 +194,7 @@ sbindir = @sbindir@
 sharedstatedir = @sharedstatedir@
 sysconfdir = @sysconfdir@
 target_alias = @target_alias@
-SUBDIRS = lib bin
-EXTRA_DIST = demo
+SUBDIRS = src lib
 all: all-recursive
 
 .SUFFIXES:
@@ -418,7 +418,7 @@ distdir: $(DISTFILES)
 	      || exit 1; \
 	  fi; \
 	done
-	-find $(distdir) -type d ! -perm -777 -exec chmod a+rwx {} \; -o \
+	-find $(distdir) -type d ! -perm -755 -exec chmod a+rwx,go+rx {} \; -o \
 	  ! -type d ! -perm -444 -links 1 -exec chmod a+r {} \; -o \
 	  ! -type d ! -perm -400 -exec chmod a+r {} \; -o \
 	  ! -type d ! -perm -444 -exec $(SHELL) $(install_sh) -c -m a+r {} {} \; \
diff --git a/AMDiS/aclocal.m4 b/AMDiS/aclocal.m4
index c6b83dae620f453eff109d72b180b3a18307599f..6cec4be818e153e5623e6e61d48999b94d619b09 100644
--- a/AMDiS/aclocal.m4
+++ b/AMDiS/aclocal.m4
@@ -1578,10 +1578,27 @@ linux*)
   # before this can be enabled.
   hardcode_into_libs=yes
 
+  # find out which ABI we are using
+  libsuff=
+  case "$host_cpu" in
+  x86_64*|s390x*|powerpc64*)
+    echo '[#]line __oline__ "configure"' > conftest.$ac_ext
+    if AC_TRY_EVAL(ac_compile); then
+      case `/usr/bin/file conftest.$ac_objext` in
+      *64-bit*)
+        libsuff=64
+        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
+        ;;
+      esac
+    fi
+    rm -rf conftest*
+    ;;
+  esac
+
   # Append ld.so.conf contents to the search path
   if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
   fi
 
   # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -4288,6 +4305,9 @@ CC=$lt_[]_LT_AC_TAGVAR(compiler, $1)
 # Is the compiler the GNU C compiler?
 with_gcc=$_LT_AC_TAGVAR(GCC, $1)
 
+gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
+gcc_ver=\`gcc -dumpversion\`
+
 # An ERE matcher.
 EGREP=$lt_EGREP
 
@@ -4421,11 +4441,11 @@ striplib=$lt_striplib
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=$lt_[]_LT_AC_TAGVAR(predep_objects, $1)
+predep_objects=\`echo $lt_[]_LT_AC_TAGVAR(predep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=$lt_[]_LT_AC_TAGVAR(postdep_objects, $1)
+postdep_objects=\`echo $lt_[]_LT_AC_TAGVAR(postdep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -4437,7 +4457,7 @@ postdeps=$lt_[]_LT_AC_TAGVAR(postdeps, $1)
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=$lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1)
+compiler_lib_search_path=\`echo $lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -4517,7 +4537,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$_LT_AC_TAGVAR(link_all_deplibs, $1)
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
+sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -6353,6 +6373,7 @@ do
     done
   done
 done
+IFS=$as_save_IFS
 lt_ac_max=0
 lt_ac_count=0
 # Add /usr/xpg4/bin/sed as it is typically found on Solaris
@@ -6385,6 +6406,7 @@ for lt_ac_sed in $lt_ac_sed_list /usr/xpg4/bin/sed; do
 done
 ])
 SED=$lt_cv_path_SED
+AC_SUBST([SED])
 AC_MSG_RESULT([$SED])
 ])
 
diff --git a/AMDiS/bin/Makefile.am b/AMDiS/bin/Makefile.am
deleted file mode 100644
index 632f9e7e456de7217031503d8787a47f97a52893..0000000000000000000000000000000000000000
--- a/AMDiS/bin/Makefile.am
+++ /dev/null
@@ -1,253 +0,0 @@
-lib_LTLIBRARIES = libamdis.la libcompositeFEM.la
-
-SOURCE_DIR = ../src
-LIB_DIR = ../lib
-PARALLEL_DIR = $(SOURCE_DIR)
-
-PARMETIS_DIR = ../lib/ParMetis-3.1
-
-AMDIS_INCLUDES = -I$(SOURCE_DIR) 
-
-libamdis_la_CXXFLAGS = 
-
-PARALLEL_AMDIS_SOURCES = 
-PARALLEL_INCLUDES =
-
-if USE_PARALLEL_DOMAIN_AMDIS
-  PARALLEL_AMDIS_SOURCES += \
-  $(SOURCE_DIR)/parallel/StdMpi.h $(SOURCE_DIR)/parallel/StdMpi.cc \
-  $(SOURCE_DIR)/parallel/ParMetisPartitioner.h $(SOURCE_DIR)/parallel/ParMetisPartitioner.cc \
-  $(SOURCE_DIR)/parallel/ZoltanPartitioner.h $(SOURCE_DIR)/parallel/ZoltanPartitioner.cc \
-  $(SOURCE_DIR)/parallel/MeshDistributor.h $(SOURCE_DIR)/parallel/MeshDistributor.cc \
-  $(SOURCE_DIR)/parallel/MeshPartitioner.h $(SOURCE_DIR)/parallel/MeshPartitioner.cc \
-  $(SOURCE_DIR)/parallel/MeshManipulation.h $(SOURCE_DIR)/parallel/MeshManipulation.cc \
-  $(SOURCE_DIR)/parallel/ParallelDebug.h $(SOURCE_DIR)/parallel/ParallelDebug.cc \
-  $(SOURCE_DIR)/parallel/ParallelProblemStatBase.h \
-  $(SOURCE_DIR)/parallel/ParallelProblemStatBase.cc \
-  $(SOURCE_DIR)/parallel/PetscSolver.h $(SOURCE_DIR)/parallel/PetscSolver.cc \
-  $(SOURCE_DIR)/parallel/MpiHelper.h $(SOURCE_DIR)/parallel/MpiHelper.cc \
-  $(SOURCE_DIR)/parallel/ElementObjectData.h $(SOURCE_DIR)/parallel/ElementObjectData.cc
-  libamdis_la_CXXFLAGS += -DHAVE_PARALLEL_DOMAIN_AMDIS=1
-  AMDIS_INCLUDES += -I$(PARMETIS_DIR)
-  AMDIS_INCLUDES += -I$(PETSC_DIR)/include -I$(PETSC_DIR)/$(PETSC_ARCH)/include
-  AMDIS_INCLUDES += -I$(LIB_DIR)/zoltan_build/include
-endif
-
-if ENABLE_UMFPACK
-  libamdis_la_CXXFLAGS += -DHAVE_UMFPACK=1 -DMTL_HAS_UMFPACK
-  AMDIS_INCLUDES += -I$(LIB_DIR)/UFconfig \
-	            -I$(LIB_DIR)/AMD/Include \
-                    -I$(LIB_DIR)/UMFPACK/Include  
-endif
-
-if ENABLE_MKL
-  libamdis_la_CXXFLAGS += -DHAVE_MKL=1 -I${MKL_INC}
-endif
-
-if ENABLE_DUNE
-  libamdis_la_CXXFLAGS += -DHAVE_DUNE=1
-  AMDIS_INCLUDES += -I$(DUNE_DIR)
-endif
-
-if ENABLE_BOOST
-  libamdis_la_CXXFLAGS += -DHAVE_BOOST=1
-endif
-
-TEMPLATE_INCLUDES = -I../lib/mtl4 
-
-INCLUDES = $(AMDIS_INCLUDES) $(PARALLEL_INCLUDES) $(TEMPLATE_INCLUDES)
-
-if AMDIS_DEBUG
-  libamdis_la_CXXFLAGS += -g -O0 -Wall -DDEBUG=1 $(OPENMP_FLAG) $(INCLUDES) #-pedantic
-else
-  libamdis_la_CXXFLAGS += -O3 -Wall -DDEBUG=0 -DNDEBUG $(OPENMP_FLAG) -ftemplate-depth-100 $(INCLUDES) #-pedantic
-endif
-
-
-libamdis_la_SOURCES =  \
-$(PARALLEL_AMDIS_SOURCES) \
-$(SOURCE_DIR)/DOFIndexed.h $(SOURCE_DIR)/DOFIndexed.cc \
-$(SOURCE_DIR)/io/GNUPlotWriter.h $(SOURCE_DIR)/io/GNUPlotWriter.cc \
-$(SOURCE_DIR)/VertexVector.h $(SOURCE_DIR)/VertexVector.cc \
-$(SOURCE_DIR)/PeriodicBC.h $(SOURCE_DIR)/PeriodicBC.cc \
-$(SOURCE_DIR)/Recovery.h $(SOURCE_DIR)/Recovery.cc \
-$(SOURCE_DIR)/RecoveryEstimator.h $(SOURCE_DIR)/RecoveryEstimator.cc \
-$(SOURCE_DIR)/ResidualEstimator.h $(SOURCE_DIR)/ResidualEstimator.cc \
-$(SOURCE_DIR)/Cholesky.h $(SOURCE_DIR)/Cholesky.cc \
-$(SOURCE_DIR)/AdaptBase.h $(SOURCE_DIR)/AdaptBase.cc \
-$(SOURCE_DIR)/ProblemIterationInterface.h \
-$(SOURCE_DIR)/StandardProblemIteration.h $(SOURCE_DIR)/StandardProblemIteration.cc \
-$(SOURCE_DIR)/ProblemScal.h $(SOURCE_DIR)/ProblemScal.cc \
-$(SOURCE_DIR)/ProblemVec.h $(SOURCE_DIR)/ProblemVec.cc \
-$(SOURCE_DIR)/ProblemVecDbg.h $(SOURCE_DIR)/ProblemVecDbg.cc \
-$(SOURCE_DIR)/DualTraverse.h $(SOURCE_DIR)/DualTraverse.cc \
-$(SOURCE_DIR)/ElementPartition_ED.h $(SOURCE_DIR)/SurfacePartition_ED.h \
-$(SOURCE_DIR)/ElementData.h $(SOURCE_DIR)/ElementData.cc \
-$(SOURCE_DIR)/ComponentTraverseInfo.h $(SOURCE_DIR)/ComponentTraverseInfo.cc \
-$(SOURCE_DIR)/CreatorMap.h $(SOURCE_DIR)/CreatorMap.hh $(SOURCE_DIR)/CreatorMap.cc \
-$(SOURCE_DIR)/CreatorInterface.h \
-$(SOURCE_DIR)/ElementFunction.h \
-$(SOURCE_DIR)/ProblemInterpolScal.h $(SOURCE_DIR)/ProblemInterpolScal.cc \
-$(SOURCE_DIR)/ProblemInterpolVec.h $(SOURCE_DIR)/ProblemInterpolVec.cc \
-$(SOURCE_DIR)/Serializable.h \
-$(SOURCE_DIR)/Serializer.cc \
-$(SOURCE_DIR)/BallProject.h \
-$(SOURCE_DIR)/CylinderProject.h \
-$(SOURCE_DIR)/io/MacroInfo.h $(SOURCE_DIR)/io/MacroInfo.cc \
-$(SOURCE_DIR)/io/MacroReader.h $(SOURCE_DIR)/io/MacroReader.cc \
-$(SOURCE_DIR)/io/ValueReader.h $(SOURCE_DIR)/io/ValueReader.cc \
-$(SOURCE_DIR)/Projection.h $(SOURCE_DIR)/Projection.cc \
-$(SOURCE_DIR)/SubAssembler.h $(SOURCE_DIR)/SubAssembler.cc \
-$(SOURCE_DIR)/ZeroOrderAssembler.h $(SOURCE_DIR)/ZeroOrderAssembler.cc \
-$(SOURCE_DIR)/FirstOrderAssembler.h $(SOURCE_DIR)/FirstOrderAssembler.cc \
-$(SOURCE_DIR)/SecondOrderAssembler.h $(SOURCE_DIR)/SecondOrderAssembler.cc \
-$(SOURCE_DIR)/Assembler.h $(SOURCE_DIR)/Assembler.cc \
-$(SOURCE_DIR)/AdaptInfo.h $(SOURCE_DIR)/AdaptInfo.cc \
-$(SOURCE_DIR)/Marker.h $(SOURCE_DIR)/Marker.cc \
-$(SOURCE_DIR)/SystemVector.h \
-$(SOURCE_DIR)/SurfaceQuadrature.h $(SOURCE_DIR)/SurfaceQuadrature.cc \
-$(SOURCE_DIR)/LeafData.h $(SOURCE_DIR)/LeafData.cc \
-$(SOURCE_DIR)/BoundaryManager.h $(SOURCE_DIR)/BoundaryManager.cc \
-$(SOURCE_DIR)/BoundaryCondition.h \
-$(SOURCE_DIR)/DirichletBC.h $(SOURCE_DIR)/DirichletBC.cc \
-$(SOURCE_DIR)/RobinBC.h $(SOURCE_DIR)/RobinBC.cc \
-$(SOURCE_DIR)/AbstractFunction.h \
-$(SOURCE_DIR)/ProblemStatBase.h \
-$(SOURCE_DIR)/DOFContainer.h \
-$(SOURCE_DIR)/io/FileWriter.h $(SOURCE_DIR)/io/FileWriter.hh $(SOURCE_DIR)/io/FileWriter.cc \
-$(SOURCE_DIR)/io/ElementFileWriter.h $(SOURCE_DIR)/io/ElementFileWriter.cc \
-$(SOURCE_DIR)/ElInfo.cc \
-$(SOURCE_DIR)/ElInfoStack.h $(SOURCE_DIR)/ElInfoStack.cc \
-$(SOURCE_DIR)/OperatorTerm.h $(SOURCE_DIR)/OperatorTerm.cc \
-$(SOURCE_DIR)/ZeroOrderTerm.h $(SOURCE_DIR)/ZeroOrderTerm.cc \
-$(SOURCE_DIR)/FirstOrderTerm.h $(SOURCE_DIR)/FirstOrderTerm.cc \
-$(SOURCE_DIR)/SecondOrderTerm.h $(SOURCE_DIR)/SecondOrderTerm.cc \
-$(SOURCE_DIR)/Operator.h $(SOURCE_DIR)/Operator.cc \
-$(SOURCE_DIR)/Mesh.cc \
-$(SOURCE_DIR)/MeshStructure.h $(SOURCE_DIR)/MeshStructure.cc \
-$(SOURCE_DIR)/MeshStructure_ED.h \
-$(SOURCE_DIR)/AMDiS.h \
-$(SOURCE_DIR)/AdaptStationary.h $(SOURCE_DIR)/AdaptStationary.cc \
-$(SOURCE_DIR)/AdaptInstationary.h $(SOURCE_DIR)/AdaptInstationary.cc \
-$(SOURCE_DIR)/QPsiPhi.h \
-$(SOURCE_DIR)/BasisFunction.h \
-$(SOURCE_DIR)/Boundary.h \
-$(SOURCE_DIR)/ITL_Solver.h \
-$(SOURCE_DIR)/CoarseningManager.h \
-$(SOURCE_DIR)/CoarseningManager1d.h $(SOURCE_DIR)/CoarseningManager2d.h $(SOURCE_DIR)/CoarseningManager3d.h \
-$(SOURCE_DIR)/DOFAdmin.h \
-$(SOURCE_DIR)/DOFIterator.h \
-$(SOURCE_DIR)/DOFMatrix.h \
-$(SOURCE_DIR)/DOFVector.h $(SOURCE_DIR)/DOFVector.hh $(SOURCE_DIR)/DOFVector.cc \
-$(SOURCE_DIR)/Element.h $(SOURCE_DIR)/ElementConnection.h \
-$(SOURCE_DIR)/ElInfo.h $(SOURCE_DIR)/ElInfo1d.h $(SOURCE_DIR)/ElInfo2d.h $(SOURCE_DIR)/ElInfo3d.h \
-$(SOURCE_DIR)/Error.h $(SOURCE_DIR)/Error.hh \
-$(SOURCE_DIR)/Estimator.h $(SOURCE_DIR)/Estimator.cc \
-$(SOURCE_DIR)/FiniteElemSpace.h \
-$(SOURCE_DIR)/FixVec.h $(SOURCE_DIR)/FixVec.hh \
-$(SOURCE_DIR)/FixVecConvert.h \
-$(SOURCE_DIR)/Flag.h \
-$(SOURCE_DIR)/Global.h \
-$(SOURCE_DIR)/UmfPackSolver.h \ $(SOURCE_DIR)/UmfPackSolver.hh \
-$(SOURCE_DIR)/Lagrange.h $(SOURCE_DIR)/Line.h \
-$(SOURCE_DIR)/MacroElement.h $(SOURCE_DIR)/MacroWriter.h \
-$(SOURCE_DIR)/Markings.h $(SOURCE_DIR)/Markings.hh \
-$(SOURCE_DIR)/Mesh.h \
-$(SOURCE_DIR)/Parameters.h \
-$(SOURCE_DIR)/Parametric.h \
-$(SOURCE_DIR)/Quadrature.h \
-$(SOURCE_DIR)/RCNeighbourList.h \
-$(SOURCE_DIRe)/RefinementManager.h \
-$(SOURCE_DIR)/RefinementManager1d.h \
-$(SOURCE_DIR)/RefinementManager2d.h \
-$(SOURCE_DIR)/RefinementManager3d.h \
-$(SOURCE_DIR)/Tetrahedron.h \
-$(SOURCE_DIR)/Traverse.h \
-$(SOURCE_DIR)/Triangle.h \
-$(SOURCE_DIR)/NonLinSolver.h $(SOURCE_DIR)/NonLinSolver.hh \
-$(SOURCE_DIR)/ProblemInstat.h $(SOURCE_DIR)/ProblemInstat.cc \
-$(SOURCE_DIR)/ProblemTimeInterface.h \
-$(SOURCE_DIR)/ProblemNonLin.h $(SOURCE_DIR)/ProblemNonLin.cc \
-$(SOURCE_DIR)/NonLinUpdater.h $(SOURCE_DIR)/NonLinUpdater.cc \
-$(SOURCE_DIR)/Newton.h $(SOURCE_DIR)/Newton.hh  \
-$(SOURCE_DIR)/NewtonFS.h $(SOURCE_DIR)/NewtonFS.hh \
-$(SOURCE_DIR)/io/GridWriter.h $(SOURCE_DIR)/io/GridWriter.hh \
-$(SOURCE_DIR)/io/ValueWriter.h \
-$(SOURCE_DIR)/QPsiPhi.cc \
-$(SOURCE_DIR)/BasisFunction.cc \
-$(SOURCE_DIR)/Boundary.cc \
-$(SOURCE_DIR)/CoarseningManager.cc \
-$(SOURCE_DIR)/CoarseningManager1d.cc \
-$(SOURCE_DIR)/CoarseningManager2d.cc \
-$(SOURCE_DIR)/CoarseningManager3d.cc \
-$(SOURCE_DIR)/DOFAdmin.cc \
-$(SOURCE_DIR)/DOFMatrix.cc \
-$(SOURCE_DIR)/Element.cc \
-$(SOURCE_DIR)/ElInfo1d.cc \
-$(SOURCE_DIR)/ElInfo2d.cc \
-$(SOURCE_DIR)/ElInfo3d.cc \
-$(SOURCE_DIR)/FiniteElemSpace.cc \
-$(SOURCE_DIR)/FixVec.cc \
-$(SOURCE_DIR)/Global.cc \
-$(SOURCE_DIR)/Lagrange.cc \
-$(SOURCE_DIR)/Line.cc \
-$(SOURCE_DIR)/MacroElement.cc \
-$(SOURCE_DIR)/io/MacroWriter.cc \
-$(SOURCE_DIR)/Parameters.cc \
-$(SOURCE_DIR)/Parametric.cc \
-$(SOURCE_DIR)/Quadrature.cc \
-$(SOURCE_DIR)/RCNeighbourList.cc \
-$(SOURCE_DIR)/RefinementManager.cc \
-$(SOURCE_DIR)/RefinementManager1d.cc \
-$(SOURCE_DIR)/RefinementManager2d.cc \
-$(SOURCE_DIR)/RefinementManager3d.cc \
-$(SOURCE_DIR)/Tetrahedron.cc \
-$(SOURCE_DIR)/Traverse.cc \
-$(SOURCE_DIR)/TraverseParallel.h $(SOURCE_DIR)/TraverseParallel.cc \
-$(SOURCE_DIR)/Triangle.cc \
-$(SOURCE_DIR)/io/ValueWriter.cc \
-$(SOURCE_DIR)/io/VtkWriter.h $(SOURCE_DIR)/io/VtkWriter.cc \
-$(SOURCE_DIR)/io/DofWriter.h $(SOURCE_DIR)/io/DofWriter.cc \
-$(SOURCE_DIR)/io/PngWriter.h $(SOURCE_DIR)/io/PngWriter.cc \
-$(SOURCE_DIR)/io/PovrayWriter.h $(SOURCE_DIR)/io/PovrayWriter.cc \
-$(SOURCE_DIR)/io/DataCollector.h $(SOURCE_DIR)/io/DataCollector.cc \
-$(SOURCE_DIR)/ElementInfo.h \
-$(SOURCE_DIR)/VertexInfo.h \
-$(SOURCE_DIR)/PeriodicInfo.h \
-$(SOURCE_DIR)/OpenMP.h \
-$(SOURCE_DIR)/ScalableQuadrature.h $(SOURCE_DIR)/ScalableQuadrature.cc \
-$(SOURCE_DIR)/SubElInfo.h $(SOURCE_DIR)/SubElInfo.cc \
-$(SOURCE_DIR)/SolutionDataStorage.h $(SOURCE_DIR)/SolutionDataStorage.hh \
-$(SOURCE_DIR)/ElementDofIteartor.h $(SOURCE_DIR)/ElementDofIterator.cc \
-$(SOURCE_DIR)/parallel/InteriorBoundary.h $(SOURCE_DIR)/parallel/InteriorBoundary.cc \
-$(SOURCE_DIR)/Debug.h $(SOURCE_DIR)/Debug.cc \
-$(SOURCE_DIR)/io/ArhReader.h $(SOURCE_DIR)/io/ArhReader.cc \
-$(SOURCE_DIR)/io/ArhWriter.h $(SOURCE_DIR)/io/ArhWriter.cc \
-$(SOURCE_DIR)/time/RosenbrockAdaptInstationary.h $(SOURCE_DIR)/time/RosenbrockAdaptInstationary.cc \
-$(SOURCE_DIR)/time/RosenbrockStationary.h $(SOURCE_DIR)/time/RosenbrockStationary.cc \
-$(SOURCE_DIR)/time/RosenbrockMethod.h $(SOURCE_DIR)/time/RosenbrockMethod.cc 
-
-COMPOSITE_SOURCE_DIR = ../compositeFEM/src
-
-libcompositeFEM_la_CXXFLAGS = $(libamdis_la_CXXFLAGS)
-
-
-libcompositeFEM_la_SOURCES = $(COMPOSITE_SOURCE_DIR)/CFE_Integration.h \
-$(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc \
-$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.h \
-$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.cc \
-$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.h \
-$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.cc \
-$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.h \
-$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.cc \
-$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.h \
-$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.cc \
-$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.h \
-$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.cc \
-$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.h \
-$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.cc \
-$(COMPOSITE_SOURCE_DIR)/SubPolytope.h $(COMPOSITE_SOURCE_DIR)/SubPolytope.cc \
-$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.h \
-$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.cc \
-$(COMPOSITE_SOURCE_DIR)/TranslateLsFct.h
-
diff --git a/AMDiS/configure b/AMDiS/configure
index e41f34bb6c5b2d5091e27b256a85000e395b2028..b21fe372707bd7cc148af1e88ecf8c93f6020591 100755
--- a/AMDiS/configure
+++ b/AMDiS/configure
@@ -462,7 +462,7 @@ ac_includes_default="\
 # include <unistd.h>
 #endif"
 
-ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CYGPATH_W PACKAGE VERSION ACLOCAL AUTOCONF AUTOMAKE AUTOHEADER MAKEINFO install_sh STRIP ac_ct_STRIP INSTALL_STRIP_PROGRAM mkdir_p AWK SET_MAKE am__leading_dot AMTAR am__tar am__untar MAINTAINER_MODE_TRUE MAINTAINER_MODE_FALSE MAINT AMDIS_DEBUG_TRUE AMDIS_DEBUG_FALSE CXX CC AMDIS_INTEL_TRUE AMDIS_INTEL_FALSE AMDIS_OPENMP_TRUE AMDIS_OPENMP_FALSE OPENMP_FLAG MPI_DIR PETSC_DIR USE_PARALLEL_AMDIS_TRUE USE_PARALLEL_AMDIS_FALSE USE_PARALLEL_DOMAIN_AMDIS_TRUE USE_PARALLEL_DOMAIN_AMDIS_FALSE ENABLE_ZOLTAN_TRUE ENABLE_ZOLTAN_FALSE ENABLE_UMFPACK_TRUE ENABLE_UMFPACK_FALSE ENABLE_MKL_TRUE ENABLE_MKL_FALSE DUNE_DIR ENABLE_DUNE_TRUE ENABLE_DUNE_FALSE ENABLE_BOOST_TRUE ENABLE_BOOST_FALSE CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT DEPDIR am__include am__quote AMDEP_TRUE AMDEP_FALSE AMDEPBACKSLASH CCDEPMODE am__fastdepCC_TRUE am__fastdepCC_FALSE CXXFLAGS ac_ct_CXX CXXDEPMODE am__fastdepCXX_TRUE am__fastdepCXX_FALSE build build_cpu build_vendor build_os host host_cpu host_vendor host_os EGREP LN_S ECHO AR ac_ct_AR RANLIB ac_ct_RANLIB CPP CXXCPP F77 FFLAGS ac_ct_F77 LIBTOOL LIBOBJS LTLIBOBJS'
+ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CYGPATH_W PACKAGE VERSION ACLOCAL AUTOCONF AUTOMAKE AUTOHEADER MAKEINFO install_sh STRIP ac_ct_STRIP INSTALL_STRIP_PROGRAM mkdir_p AWK SET_MAKE am__leading_dot AMTAR am__tar am__untar MAINTAINER_MODE_TRUE MAINTAINER_MODE_FALSE MAINT AMDIS_DEBUG_TRUE AMDIS_DEBUG_FALSE CXX CC AMDIS_INTEL_TRUE AMDIS_INTEL_FALSE AMDIS_OPENMP_TRUE AMDIS_OPENMP_FALSE OPENMP_FLAG MPI_DIR PETSC_DIR USE_PARALLEL_AMDIS_TRUE USE_PARALLEL_AMDIS_FALSE USE_PARALLEL_DOMAIN_AMDIS_TRUE USE_PARALLEL_DOMAIN_AMDIS_FALSE ENABLE_ZOLTAN_TRUE ENABLE_ZOLTAN_FALSE ENABLE_UMFPACK_TRUE ENABLE_UMFPACK_FALSE ENABLE_MKL_TRUE ENABLE_MKL_FALSE DUNE_DIR ENABLE_DUNE_TRUE ENABLE_DUNE_FALSE ENABLE_BOOST_TRUE ENABLE_BOOST_FALSE CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT DEPDIR am__include am__quote AMDEP_TRUE AMDEP_FALSE AMDEPBACKSLASH CCDEPMODE am__fastdepCC_TRUE am__fastdepCC_FALSE CXXFLAGS ac_ct_CXX CXXDEPMODE am__fastdepCXX_TRUE am__fastdepCXX_FALSE build build_cpu build_vendor build_os host host_cpu host_vendor host_os SED EGREP LN_S ECHO AR ac_ct_AR RANLIB ac_ct_RANLIB CPP CXXCPP F77 FFLAGS ac_ct_F77 LIBTOOL LIBOBJS LTLIBOBJS'
 ac_subst_files=''
 
 # Initialize some variables set by options.
@@ -3977,6 +3977,7 @@ do
     done
   done
 done
+IFS=$as_save_IFS
 lt_ac_max=0
 lt_ac_count=0
 # Add /usr/xpg4/bin/sed as it is typically found on Solaris
@@ -4011,6 +4012,7 @@ done
 fi
 
 SED=$lt_cv_path_SED
+
 echo "$as_me:$LINENO: result: $SED" >&5
 echo "${ECHO_T}$SED" >&6
 
@@ -4451,7 +4453,7 @@ ia64-*-hpux*)
   ;;
 *-*-irix6*)
   # Find out which ABI we are using.
-  echo '#line 4454 "configure"' > conftest.$ac_ext
+  echo '#line 4456 "configure"' > conftest.$ac_ext
   if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
   (eval $ac_compile) 2>&5
   ac_status=$?
@@ -5586,7 +5588,7 @@ fi
 
 
 # Provide some information about the compiler.
-echo "$as_me:5589:" \
+echo "$as_me:5591:" \
      "checking for Fortran 77 compiler version" >&5
 ac_compiler=`set X $ac_compile; echo $2`
 { (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5
@@ -6649,11 +6651,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:6652: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:6654: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>conftest.err)
    ac_status=$?
    cat conftest.err >&5
-   echo "$as_me:6656: \$? = $ac_status" >&5
+   echo "$as_me:6658: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s "$ac_outfile"; then
      # The compiler can only warn and ignore the option if not recognized
      # So say no if there are warnings other than the usual output.
@@ -6917,11 +6919,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:6920: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:6922: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>conftest.err)
    ac_status=$?
    cat conftest.err >&5
-   echo "$as_me:6924: \$? = $ac_status" >&5
+   echo "$as_me:6926: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s "$ac_outfile"; then
      # The compiler can only warn and ignore the option if not recognized
      # So say no if there are warnings other than the usual output.
@@ -7021,11 +7023,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:7024: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:7026: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>out/conftest.err)
    ac_status=$?
    cat out/conftest.err >&5
-   echo "$as_me:7028: \$? = $ac_status" >&5
+   echo "$as_me:7030: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s out/conftest2.$ac_objext
    then
      # The compiler can only warn and ignore the option if not recognized
@@ -8486,10 +8488,31 @@ linux*)
   # before this can be enabled.
   hardcode_into_libs=yes
 
+  # find out which ABI we are using
+  libsuff=
+  case "$host_cpu" in
+  x86_64*|s390x*|powerpc64*)
+    echo '#line 8495 "configure"' > conftest.$ac_ext
+    if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+  (eval $ac_compile) 2>&5
+  ac_status=$?
+  echo "$as_me:$LINENO: \$? = $ac_status" >&5
+  (exit $ac_status); }; then
+      case `/usr/bin/file conftest.$ac_objext` in
+      *64-bit*)
+        libsuff=64
+        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
+        ;;
+      esac
+    fi
+    rm -rf conftest*
+    ;;
+  esac
+
   # Append ld.so.conf contents to the search path
   if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
   fi
 
   # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -9366,7 +9389,7 @@ else
   lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2
   lt_status=$lt_dlunknown
   cat > conftest.$ac_ext <<EOF
-#line 9369 "configure"
+#line 9392 "configure"
 #include "confdefs.h"
 
 #if HAVE_DLFCN_H
@@ -9466,7 +9489,7 @@ else
   lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2
   lt_status=$lt_dlunknown
   cat > conftest.$ac_ext <<EOF
-#line 9469 "configure"
+#line 9492 "configure"
 #include "confdefs.h"
 
 #if HAVE_DLFCN_H
@@ -9797,6 +9820,9 @@ CC=$lt_compiler
 # Is the compiler the GNU C compiler?
 with_gcc=$GCC
 
+gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
+gcc_ver=\`gcc -dumpversion\`
+
 # An ERE matcher.
 EGREP=$lt_EGREP
 
@@ -9930,11 +9956,11 @@ striplib=$lt_striplib
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=$lt_predep_objects
+predep_objects=\`echo $lt_predep_objects | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=$lt_postdep_objects
+postdep_objects=\`echo $lt_postdep_objects | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -9946,7 +9972,7 @@ postdeps=$lt_postdeps
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=$lt_compiler_lib_search_path
+compiler_lib_search_path=\`echo $lt_compiler_lib_search_path | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -10026,7 +10052,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$link_all_deplibs
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
+sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -11806,11 +11832,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:11809: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:11835: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>conftest.err)
    ac_status=$?
    cat conftest.err >&5
-   echo "$as_me:11813: \$? = $ac_status" >&5
+   echo "$as_me:11839: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s "$ac_outfile"; then
      # The compiler can only warn and ignore the option if not recognized
      # So say no if there are warnings other than the usual output.
@@ -11910,11 +11936,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:11913: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:11939: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>out/conftest.err)
    ac_status=$?
    cat out/conftest.err >&5
-   echo "$as_me:11917: \$? = $ac_status" >&5
+   echo "$as_me:11943: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s out/conftest2.$ac_objext
    then
      # The compiler can only warn and ignore the option if not recognized
@@ -12442,10 +12468,31 @@ linux*)
   # before this can be enabled.
   hardcode_into_libs=yes
 
+  # find out which ABI we are using
+  libsuff=
+  case "$host_cpu" in
+  x86_64*|s390x*|powerpc64*)
+    echo '#line 12475 "configure"' > conftest.$ac_ext
+    if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+  (eval $ac_compile) 2>&5
+  ac_status=$?
+  echo "$as_me:$LINENO: \$? = $ac_status" >&5
+  (exit $ac_status); }; then
+      case `/usr/bin/file conftest.$ac_objext` in
+      *64-bit*)
+        libsuff=64
+        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
+        ;;
+      esac
+    fi
+    rm -rf conftest*
+    ;;
+  esac
+
   # Append ld.so.conf contents to the search path
   if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
   fi
 
   # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -12829,6 +12876,9 @@ CC=$lt_compiler_CXX
 # Is the compiler the GNU C compiler?
 with_gcc=$GCC_CXX
 
+gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
+gcc_ver=\`gcc -dumpversion\`
+
 # An ERE matcher.
 EGREP=$lt_EGREP
 
@@ -12962,11 +13012,11 @@ striplib=$lt_striplib
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=$lt_predep_objects_CXX
+predep_objects=\`echo $lt_predep_objects_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=$lt_postdep_objects_CXX
+postdep_objects=\`echo $lt_postdep_objects_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -12978,7 +13028,7 @@ postdeps=$lt_postdeps_CXX
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=$lt_compiler_lib_search_path_CXX
+compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -13058,7 +13108,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$link_all_deplibs_CXX
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
+sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -13480,11 +13530,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:13483: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:13533: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>conftest.err)
    ac_status=$?
    cat conftest.err >&5
-   echo "$as_me:13487: \$? = $ac_status" >&5
+   echo "$as_me:13537: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s "$ac_outfile"; then
      # The compiler can only warn and ignore the option if not recognized
      # So say no if there are warnings other than the usual output.
@@ -13584,11 +13634,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:13587: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:13637: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>out/conftest.err)
    ac_status=$?
    cat out/conftest.err >&5
-   echo "$as_me:13591: \$? = $ac_status" >&5
+   echo "$as_me:13641: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s out/conftest2.$ac_objext
    then
      # The compiler can only warn and ignore the option if not recognized
@@ -15029,10 +15079,31 @@ linux*)
   # before this can be enabled.
   hardcode_into_libs=yes
 
+  # find out which ABI we are using
+  libsuff=
+  case "$host_cpu" in
+  x86_64*|s390x*|powerpc64*)
+    echo '#line 15086 "configure"' > conftest.$ac_ext
+    if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+  (eval $ac_compile) 2>&5
+  ac_status=$?
+  echo "$as_me:$LINENO: \$? = $ac_status" >&5
+  (exit $ac_status); }; then
+      case `/usr/bin/file conftest.$ac_objext` in
+      *64-bit*)
+        libsuff=64
+        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
+        ;;
+      esac
+    fi
+    rm -rf conftest*
+    ;;
+  esac
+
   # Append ld.so.conf contents to the search path
   if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
   fi
 
   # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -15416,6 +15487,9 @@ CC=$lt_compiler_F77
 # Is the compiler the GNU C compiler?
 with_gcc=$GCC_F77
 
+gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
+gcc_ver=\`gcc -dumpversion\`
+
 # An ERE matcher.
 EGREP=$lt_EGREP
 
@@ -15549,11 +15623,11 @@ striplib=$lt_striplib
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=$lt_predep_objects_F77
+predep_objects=\`echo $lt_predep_objects_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=$lt_postdep_objects_F77
+postdep_objects=\`echo $lt_postdep_objects_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -15565,7 +15639,7 @@ postdeps=$lt_postdeps_F77
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=$lt_compiler_lib_search_path_F77
+compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -15645,7 +15719,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$link_all_deplibs_F77
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
+sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -15787,11 +15861,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:15790: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:15864: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>conftest.err)
    ac_status=$?
    cat conftest.err >&5
-   echo "$as_me:15794: \$? = $ac_status" >&5
+   echo "$as_me:15868: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s "$ac_outfile"; then
      # The compiler can only warn and ignore the option if not recognized
      # So say no if there are warnings other than the usual output.
@@ -16055,11 +16129,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:16058: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:16132: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>conftest.err)
    ac_status=$?
    cat conftest.err >&5
-   echo "$as_me:16062: \$? = $ac_status" >&5
+   echo "$as_me:16136: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s "$ac_outfile"; then
      # The compiler can only warn and ignore the option if not recognized
      # So say no if there are warnings other than the usual output.
@@ -16159,11 +16233,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:16162: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:16236: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>out/conftest.err)
    ac_status=$?
    cat out/conftest.err >&5
-   echo "$as_me:16166: \$? = $ac_status" >&5
+   echo "$as_me:16240: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s out/conftest2.$ac_objext
    then
      # The compiler can only warn and ignore the option if not recognized
@@ -17624,10 +17698,31 @@ linux*)
   # before this can be enabled.
   hardcode_into_libs=yes
 
+  # find out which ABI we are using
+  libsuff=
+  case "$host_cpu" in
+  x86_64*|s390x*|powerpc64*)
+    echo '#line 17705 "configure"' > conftest.$ac_ext
+    if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+  (eval $ac_compile) 2>&5
+  ac_status=$?
+  echo "$as_me:$LINENO: \$? = $ac_status" >&5
+  (exit $ac_status); }; then
+      case `/usr/bin/file conftest.$ac_objext` in
+      *64-bit*)
+        libsuff=64
+        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
+        ;;
+      esac
+    fi
+    rm -rf conftest*
+    ;;
+  esac
+
   # Append ld.so.conf contents to the search path
   if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
   fi
 
   # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -18011,6 +18106,9 @@ CC=$lt_compiler_GCJ
 # Is the compiler the GNU C compiler?
 with_gcc=$GCC_GCJ
 
+gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
+gcc_ver=\`gcc -dumpversion\`
+
 # An ERE matcher.
 EGREP=$lt_EGREP
 
@@ -18144,11 +18242,11 @@ striplib=$lt_striplib
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=$lt_predep_objects_GCJ
+predep_objects=\`echo $lt_predep_objects_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=$lt_postdep_objects_GCJ
+postdep_objects=\`echo $lt_postdep_objects_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -18160,7 +18258,7 @@ postdeps=$lt_postdeps_GCJ
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=$lt_compiler_lib_search_path_GCJ
+compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -18240,7 +18338,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$link_all_deplibs_GCJ
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
+sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -18492,6 +18590,9 @@ CC=$lt_compiler_RC
 # Is the compiler the GNU C compiler?
 with_gcc=$GCC_RC
 
+gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
+gcc_ver=\`gcc -dumpversion\`
+
 # An ERE matcher.
 EGREP=$lt_EGREP
 
@@ -18625,11 +18726,11 @@ striplib=$lt_striplib
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=$lt_predep_objects_RC
+predep_objects=\`echo $lt_predep_objects_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=$lt_postdep_objects_RC
+postdep_objects=\`echo $lt_postdep_objects_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -18641,7 +18742,7 @@ postdeps=$lt_postdeps_RC
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=$lt_compiler_lib_search_path_RC
+compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -18721,7 +18822,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$link_all_deplibs_RC
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
+sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
 
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -18826,7 +18927,7 @@ LIBTOOL='$(SHELL) $(top_builddir)/libtool'
 
 
 
-                              ac_config_files="$ac_config_files Makefile lib/Makefile bin/Makefile"
+                              ac_config_files="$ac_config_files Makefile src/Makefile lib/Makefile"
 
 cat >confcache <<\_ACEOF
 # This file is a shell script that caches the results of configure
@@ -19488,8 +19589,8 @@ do
   case "$ac_config_target" in
   # Handling of arguments.
   "Makefile" ) CONFIG_FILES="$CONFIG_FILES Makefile" ;;
+  "src/Makefile" ) CONFIG_FILES="$CONFIG_FILES src/Makefile" ;;
   "lib/Makefile" ) CONFIG_FILES="$CONFIG_FILES lib/Makefile" ;;
-  "bin/Makefile" ) CONFIG_FILES="$CONFIG_FILES bin/Makefile" ;;
   "depfiles" ) CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
   *) { { echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5
 echo "$as_me: error: invalid argument: $ac_config_target" >&2;}
@@ -19654,6 +19755,7 @@ s,@host@,$host,;t t
 s,@host_cpu@,$host_cpu,;t t
 s,@host_vendor@,$host_vendor,;t t
 s,@host_os@,$host_os,;t t
+s,@SED@,$SED,;t t
 s,@EGREP@,$EGREP,;t t
 s,@LN_S@,$LN_S,;t t
 s,@ECHO@,$ECHO,;t t
diff --git a/AMDiS/configure.ac b/AMDiS/configure.ac
index 423f93fa8953c42745523cdc7aa579811567af97..0fd9bcca9278690fda72af03303ec8e831faa3c0 100644
--- a/AMDiS/configure.ac
+++ b/AMDiS/configure.ac
@@ -125,7 +125,7 @@ AC_PROG_CXX
 AC_PROG_LIBTOOL
 AC_CONFIG_FILES([
 	Makefile
+	src/Makefile
 	lib/Makefile
-	bin/Makefile
 	])
 AC_OUTPUT
diff --git a/AMDiS/libtool b/AMDiS/libtool
index 1a37a1c4572b62407064c5fbf948ba43cd0594c4..b2a4d8db3d71e3d759ecd35ce85adc086a048cff 100755
--- a/AMDiS/libtool
+++ b/AMDiS/libtool
@@ -30,10 +30,10 @@
 # the same distribution terms that you use for the rest of that program.
 
 # A sed program that does not truncate output.
-SED="/usr/bin/sed"
+SED="/bin/sed"
 
 # Sed that helps us avoid accidentally triggering echo(1) options like -n.
-Xsed="/usr/bin/sed -e 1s/^X//"
+Xsed="/bin/sed -e 1s/^X//"
 
 # The HP-UX ksh and POSIX shell print the target directory to stdout
 # if CDPATH is set.
@@ -44,7 +44,7 @@ available_tags=" CXX F77"
 
 # ### BEGIN LIBTOOL CONFIG
 
-# Libtool was configured on host deimos102:
+# Libtool was configured on host NWRW15:
 
 # Shell to use when invoking shell scripts.
 SHELL="/bin/sh"
@@ -66,12 +66,12 @@ fast_install=yes
 
 # The host system.
 host_alias=
-host=x86_64-unknown-linux-gnu
+host=i686-pc-linux-gnu
 host_os=linux-gnu
 
 # The build system.
 build_alias=
-build=x86_64-unknown-linux-gnu
+build=i686-pc-linux-gnu
 build_os=linux-gnu
 
 # An echo program that does not interpret backslashes.
@@ -82,22 +82,25 @@ AR="ar"
 AR_FLAGS="cru"
 
 # A C compiler.
-LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+LTCC="gcc"
 
 # LTCC compiler flags.
 LTCFLAGS="-g -O2"
 
 # A language-specific compiler.
-CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+CC="gcc"
 
 # Is the compiler the GNU C compiler?
 with_gcc=yes
 
+gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
+gcc_ver=`gcc -dumpversion`
+
 # An ERE matcher.
 EGREP="grep -E"
 
 # The linker used to build libraries.
-LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
+LD="/usr/bin/ld"
 
 # Whether we need hard or soft links.
 LN_S="ln -s"
@@ -171,7 +174,7 @@ dlopen_self=unknown
 dlopen_self_static=unknown
 
 # Compiler flag to prevent dynamic linking.
-link_static_flag=""
+link_static_flag="-static"
 
 # Compiler flag to turn off builtin functions.
 no_builtin_flag=" -fno-builtin"
@@ -229,11 +232,11 @@ striplib="strip --strip-unneeded"
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=""
+predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=""
+postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -245,7 +248,7 @@ postdeps=""
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=""
+compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method="pass_all"
@@ -325,10 +328,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
 link_all_deplibs=unknown
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/4.1.2/ /fastfs/wir/local/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /fastfs/wir/local/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
+sys_lib_search_path_spec=`echo " /u/witkowski/local/lib/i386-redhat-linux/4.1.2/ /u/witkowski/local/lib/ /u/witkowski/local/intel/mkl/10.0.1.014/lib/32/i386-redhat-linux/4.1.2/ /u/witkowski/local/intel/mkl/10.0.1.014/lib/32/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
 
 # Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/mysql /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib /usr/lib/xulrunner-1.9.2 "
 
 # Fix the shell variable $srcfile for the compiler.
 fix_srcfile_path=""
@@ -6760,7 +6763,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
 # End:
 # ### BEGIN LIBTOOL TAG CONFIG: CXX
 
-# Libtool was configured on host deimos102:
+# Libtool was configured on host NWRW15:
 
 # Shell to use when invoking shell scripts.
 SHELL="/bin/sh"
@@ -6782,12 +6785,12 @@ fast_install=yes
 
 # The host system.
 host_alias=
-host=x86_64-unknown-linux-gnu
+host=i686-pc-linux-gnu
 host_os=linux-gnu
 
 # The build system.
 build_alias=
-build=x86_64-unknown-linux-gnu
+build=i686-pc-linux-gnu
 build_os=linux-gnu
 
 # An echo program that does not interpret backslashes.
@@ -6798,22 +6801,25 @@ AR="ar"
 AR_FLAGS="cru"
 
 # A C compiler.
-LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+LTCC="gcc"
 
 # LTCC compiler flags.
 LTCFLAGS="-g -O2"
 
 # A language-specific compiler.
-CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicxx"
+CC="g++"
 
 # Is the compiler the GNU C compiler?
 with_gcc=yes
 
+gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
+gcc_ver=`gcc -dumpversion`
+
 # An ERE matcher.
 EGREP="grep -E"
 
 # The linker used to build libraries.
-LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
+LD="/usr/bin/ld"
 
 # Whether we need hard or soft links.
 LN_S="ln -s"
@@ -6887,7 +6893,7 @@ dlopen_self=unknown
 dlopen_self_static=unknown
 
 # Compiler flag to prevent dynamic linking.
-link_static_flag=""
+link_static_flag="-static"
 
 # Compiler flag to turn off builtin functions.
 no_builtin_flag=" -fno-builtin"
@@ -6942,11 +6948,11 @@ striplib="strip --strip-unneeded"
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o"
+predep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbeginS.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o"
+postdep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/crtendS.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -6954,11 +6960,11 @@ predeps=""
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
+postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s"
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/fastfs/wir/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
+compiler_lib_search_path=`echo "-L/u/witkowski/local/lib -L/u/witkowski/local/intel/mkl/10.0.1.014/lib/32 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.." | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method="pass_all"
@@ -7038,10 +7044,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
 link_all_deplibs=unknown
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/4.1.2/ /fastfs/wir/local/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /fastfs/wir/local/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
+sys_lib_search_path_spec=`echo " /u/witkowski/local/lib/i386-redhat-linux/4.1.2/ /u/witkowski/local/lib/ /u/witkowski/local/intel/mkl/10.0.1.014/lib/32/i386-redhat-linux/4.1.2/ /u/witkowski/local/intel/mkl/10.0.1.014/lib/32/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
 
 # Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/mysql /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib /usr/lib/xulrunner-1.9.2 "
 
 # Fix the shell variable $srcfile for the compiler.
 fix_srcfile_path=""
@@ -7065,7 +7071,7 @@ include_expsyms=""
 
 # ### BEGIN LIBTOOL TAG CONFIG: F77
 
-# Libtool was configured on host deimos102:
+# Libtool was configured on host NWRW15:
 
 # Shell to use when invoking shell scripts.
 SHELL="/bin/sh"
@@ -7087,12 +7093,12 @@ fast_install=yes
 
 # The host system.
 host_alias=
-host=x86_64-unknown-linux-gnu
+host=i686-pc-linux-gnu
 host_os=linux-gnu
 
 # The build system.
 build_alias=
-build=x86_64-unknown-linux-gnu
+build=i686-pc-linux-gnu
 build_os=linux-gnu
 
 # An echo program that does not interpret backslashes.
@@ -7103,7 +7109,7 @@ AR="ar"
 AR_FLAGS="cru"
 
 # A C compiler.
-LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+LTCC="gcc"
 
 # LTCC compiler flags.
 LTCFLAGS="-g -O2"
@@ -7112,13 +7118,16 @@ LTCFLAGS="-g -O2"
 CC="g77"
 
 # Is the compiler the GNU C compiler?
-with_gcc=
+with_gcc=yes
+
+gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
+gcc_ver=`gcc -dumpversion`
 
 # An ERE matcher.
 EGREP="grep -E"
 
 # The linker used to build libraries.
-LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
+LD="/usr/bin/ld"
 
 # Whether we need hard or soft links.
 LN_S="ln -s"
@@ -7250,11 +7259,11 @@ striplib="strip --strip-unneeded"
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=""
+predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=""
+postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -7266,7 +7275,7 @@ postdeps=""
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=""
+compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method="pass_all"
@@ -7346,10 +7355,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
 link_all_deplibs=unknown
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/3.3.5/ /fastfs/wir/local/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/"
+sys_lib_search_path_spec=`echo " /u/witkowski/local/lib/i386-redhat-linux/3.4.6/ /u/witkowski/local/lib/ /u/witkowski/local/intel/mkl/10.0.1.014/lib/32/i386-redhat-linux/3.4.6/ /u/witkowski/local/intel/mkl/10.0.1.014/lib/32/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../ /lib/i386-redhat-linux/3.4.6/ /lib/ /usr/lib/i386-redhat-linux/3.4.6/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
 
 # Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/mysql /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib /usr/lib/xulrunner-1.9.2 "
 
 # Fix the shell variable $srcfile for the compiler.
 fix_srcfile_path=""
diff --git a/AMDiS/src/Makefile.am b/AMDiS/src/Makefile.am
new file mode 100644
index 0000000000000000000000000000000000000000..05316b6026c625e289a6e7cf3cc9c96146e43ed5
--- /dev/null
+++ b/AMDiS/src/Makefile.am
@@ -0,0 +1,368 @@
+lib_LTLIBRARIES = libamdis.la libcompositeFEM.la
+
+LIB_DIR = ../lib
+PARALLEL_DIR = $(SOURCE_DIR)
+
+PARMETIS_DIR = ../lib/ParMetis-3.1
+
+AMDIS_INCLUDES = -I$(SOURCE_DIR) 
+
+libamdis_la_CXXFLAGS = 
+
+PARALLEL_AMDIS_SOURCES = 
+PARALLEL_INCLUDES =
+
+if USE_PARALLEL_DOMAIN_AMDIS
+  PARALLEL_AMDIS_SOURCES += \
+  parallel/StdMpi.h parallel/StdMpi.cc \
+  parallel/ParMetisPartitioner.h parallel/ParMetisPartitioner.cc \
+  parallel/ZoltanPartitioner.h parallel/ZoltanPartitioner.cc \
+  parallel/MeshDistributor.h parallel/MeshDistributor.cc \
+  parallel/MeshPartitioner.h parallel/MeshPartitioner.cc \
+  parallel/MeshManipulation.h parallel/MeshManipulation.cc \
+  parallel/ParallelDebug.h parallel/ParallelDebug.cc \
+  parallel/ParallelProblemStatBase.h \
+  parallel/ParallelProblemStatBase.cc \
+  parallel/PetscSolver.h parallel/PetscSolver.cc \
+  parallel/MpiHelper.h parallel/MpiHelper.cc \
+  parallel/ElementObjectData.h parallel/ElementObjectData.cc
+  libamdis_la_CXXFLAGS += -DHAVE_PARALLEL_DOMAIN_AMDIS=1
+  AMDIS_INCLUDES += -I$(PARMETIS_DIR)
+  AMDIS_INCLUDES += -I$(PETSC_DIR)/include -I$(PETSC_DIR)/$(PETSC_ARCH)/include
+  AMDIS_INCLUDES += -I$(LIB_DIR)/zoltan_build/include
+endif
+
+if ENABLE_UMFPACK
+  libamdis_la_CXXFLAGS += -DHAVE_UMFPACK=1 -DMTL_HAS_UMFPACK
+  AMDIS_INCLUDES += -I$(LIB_DIR)/UFconfig \
+	            -I$(LIB_DIR)/AMD/Include \
+                    -I$(LIB_DIR)/UMFPACK/Include  
+endif
+
+if ENABLE_MKL
+  libamdis_la_CXXFLAGS += -DHAVE_MKL=1 -I${MKL_INC}
+endif
+
+if ENABLE_DUNE
+  libamdis_la_CXXFLAGS += -DHAVE_DUNE=1
+  AMDIS_INCLUDES += -I$(DUNE_DIR)
+endif
+
+if ENABLE_BOOST
+  libamdis_la_CXXFLAGS += -DHAVE_BOOST=1
+endif
+
+TEMPLATE_INCLUDES = -I../lib/mtl4 
+
+INCLUDES = $(AMDIS_INCLUDES) $(PARALLEL_INCLUDES) $(TEMPLATE_INCLUDES)
+
+if AMDIS_DEBUG
+  libamdis_la_CXXFLAGS += -g -O0 -Wall -DDEBUG=1 $(OPENMP_FLAG) $(INCLUDES) #-pedantic
+else
+  libamdis_la_CXXFLAGS += -O3 -Wall -DDEBUG=0 -DNDEBUG $(OPENMP_FLAG) -ftemplate-depth-100 $(INCLUDES) #-pedantic
+endif
+
+nobase_include_HEADERS = \
+AMDiS.h \
+AMDiS_fwd.h \
+AbstractFunction.h \
+AdaptBase.h \
+AdaptInfo.h \
+AdaptInstationary.h \
+AdaptStationary.h \
+Assembler.h \
+BallProject.h \
+BasisFunction.h \
+Boundary.h \
+BoundaryCondition.h \
+BoundaryManager.h \
+Cholesky.h \
+CoarseningManager.h \
+CoarseningManager1d.h \
+CoarseningManager2d.h \
+CoarseningManager3d.h \
+ComponentTraverseInfo.h \
+CouplingTimeInterface.h \
+CreatorInterface.h \
+CreatorMap.h \
+CreatorMap.hh \
+CylinderProject.h \
+DOFAdmin.h \
+DOFContainer.h \
+DOFIndexed.h \
+DOFIterator.h \
+DOFMatrix.h \
+DOFVector.h \
+DOFVector.hh \
+Debug.h \
+DirichletBC.h \
+DualTraverse.h \
+ElInfo.h \
+ElInfo1d.h \
+ElInfo2d.h \
+ElInfo3d.h \
+ElInfoStack.h \
+Element.h \
+Element.hh \
+ElementData.h \
+ElementDofIterator.h \
+ElementFunction.h \
+ElementInfo.h \
+ElementRegion_ED.h \
+EmptyElementData.h \
+Error.h \
+Error.hh \
+Estimator.h \
+FiniteElemSpace.h \
+FirstOrderAssembler.h \
+FirstOrderTerm.h \
+FixVec.h \
+FixVec.hh \
+FixVecConvert.h \
+Flag.h \
+Global.h \
+GlobalDOFNumbering.h \
+GlobalElementNumbering.h \
+ITL_OEMSolver.h \
+ITL_Preconditioner.h \
+ITL_Solver.h \
+Lagrange.h \
+LeafData.h \
+Line.h \
+MacroElement.h \
+Marker.h \
+MathFunctions.h \
+MatrixVector.h \
+Mesh.h \
+MeshStructure.h \
+MeshStructure_ED.h \
+MpCCIAdapter.h \
+Newton.h \
+Newton.hh \
+NewtonS.h \
+NewtonS.hh \
+NonLinSolver.h \
+NonLinSolver.hh \
+NonLinUpdater.h \
+OEMSolver.h \
+OpenMP.h \
+Operator.h \
+Operator.hh \
+OperatorTerm.h \
+OperatorTerm.hh \
+Parameters.h \
+Parametric.h \
+PardisoSolver.h \
+PardisoSolver.hh \
+PeriodicBC.h \
+PeriodicConnection.h \
+PeriodicInfo.h \
+PeriodicMap.h \
+ProblemImplicit.h \
+ProblemInstat.h \
+ProblemInterpolScal.h \
+ProblemInterpolVec.h \
+ProblemIterationInterface.h \
+ProblemNonLin.h \
+ProblemScal.h \
+ProblemStatBase.h \
+ProblemTimeInterface.h \
+ProblemVec.h \
+ProblemVecDbg.h \
+Projection.h \
+QPInfo.h \
+QPsiPhi.h \
+Quadrature.h \
+Quadrature.hh \
+RCNeighbourList.h \
+Recovery.h \
+RecoveryEstimator.h \
+RefinementManager.h \
+RefinementManager1d.h \
+RefinementManager2d.h \
+RefinementManager3d.h \
+ResidualEstimator.h \
+ResidualParallelEstimator.h \
+RobinBC.h \
+RobinBC.hh \
+SMIAdapter.h \
+ScalableQuadrature.h \
+SecondOrderAssembler.h \
+SecondOrderTerm.h \
+Serializable.h \
+Serializer.h \
+SolutionDataStorage.h \
+SolutionDataStorage.hh \
+SolverMatrix.h \
+StandardProblemIteration.h \
+SubAssembler.h \
+SubAssembler.hh \
+SubElInfo.h \
+SubQuadrature.h \
+SurfaceAssembler.h \
+SurfaceOperator.h \
+SurfaceQuadrature.h \
+SurfaceRegion_ED.h \
+SystemVector.h \
+Tetrahedron.h \
+TimedObject.h \
+Traverse.h \
+TraverseParallel.h \
+Triangle.h \
+UmfPackSolver.h \
+VertexInfo.h \
+VertexVector.h \
+ZeroOrderAssembler.h \
+ZeroOrderTerm.h \
+io/ArhReader.h \
+io/ArhWriter.h \
+io/DataCollector.h \
+io/DofWriter.h \
+io/ElementFileWriter.h \
+io/FileWriter.h \
+io/GNUPlotWriter.h \
+io/GridWriter.h \
+io/GridWriter.hh \
+io/MacroInfo.h \
+io/MacroReader.h \
+io/MacroWriter.h \
+io/PngWriter.h \
+io/PovrayWriter.h \
+io/ValueReader.h \ 
+io/ValueWriter.h \
+io/VtkWriter.h \
+io/VtkWriter.hh \
+parallel/InteriorBoundary.h \
+time/RosenbrockAdaptInstationary.h \
+time/RosenbrockStationary.h \
+time/RosenbrockMethod.h 
+
+libamdis_la_SOURCES =  \
+$(PARALLEL_AMDIS_SOURCES) \
+DOFIndexed.cc \
+io/GNUPlotWriter.cc \
+VertexVector.cc \
+PeriodicBC.cc \
+Recovery.cc \
+RecoveryEstimator.cc \
+ResidualEstimator.cc \
+Cholesky.cc \
+AdaptBase.cc \
+StandardProblemIteration.cc \
+ProblemScal.cc \
+ProblemVec.cc \
+ProblemVecDbg.cc \
+DualTraverse.cc \
+ElementData.cc \
+ComponentTraverseInfo.cc \
+CreatorMap.cc \
+ProblemInterpolScal.cc \
+ProblemInterpolVec.cc \
+Serializer.cc \
+io/MacroInfo.cc \
+io/MacroReader.cc \
+io/ValueReader.cc \
+Projection.cc \
+SubAssembler.cc \
+ZeroOrderAssembler.cc \
+FirstOrderAssembler.cc \
+SecondOrderAssembler.cc \
+Assembler.cc \
+AdaptInfo.cc \
+Marker.cc \
+SurfaceQuadrature.cc \
+LeafData.cc \
+BoundaryManager.cc \
+DirichletBC.cc \
+RobinBC.cc \
+io/FileWriter.cc \
+io/ElementFileWriter.cc \
+ElInfo.cc \
+ElInfoStack.cc \
+OperatorTerm.cc \
+ZeroOrderTerm.cc \
+FirstOrderTerm.cc \
+SecondOrderTerm.cc \
+Operator.cc \
+Mesh.cc \
+MeshStructure.cc \
+AdaptStationary.cc \
+AdaptInstationary.cc \
+DOFVector.cc \
+Estimator.cc \
+ProblemInstat.cc \
+ProblemNonLin.cc \
+NonLinUpdater.cc \
+QPsiPhi.cc \
+BasisFunction.cc \
+Boundary.cc \
+CoarseningManager.cc \
+CoarseningManager1d.cc \
+CoarseningManager2d.cc \
+CoarseningManager3d.cc \
+DOFAdmin.cc \
+DOFMatrix.cc \
+Element.cc \
+ElInfo1d.cc \
+ElInfo2d.cc \
+ElInfo3d.cc \
+FiniteElemSpace.cc \
+FixVec.cc \
+Global.cc \
+Lagrange.cc \
+Line.cc \
+MacroElement.cc \
+io/MacroWriter.cc \
+Parameters.cc \
+Parametric.cc \
+Quadrature.cc \
+RCNeighbourList.cc \
+RefinementManager.cc \
+RefinementManager1d.cc \
+RefinementManager2d.cc \
+RefinementManager3d.cc \
+Tetrahedron.cc \
+Traverse.cc \
+TraverseParallel.cc \
+Triangle.cc \
+io/ValueWriter.cc \
+io/VtkWriter.cc \
+io/DofWriter.cc \
+io/PngWriter.cc \
+io/PovrayWriter.cc \
+io/DataCollector.cc \
+ScalableQuadrature.cc \
+SubElInfo.cc \
+ElementDofIterator.cc \
+parallel/InteriorBoundary.cc \
+Debug.cc \
+io/ArhReader.cc \
+io/ArhWriter.cc \
+time/RosenbrockAdaptInstationary.cc \
+time/RosenbrockStationary.cc \
+time/RosenbrockMethod.cc 
+
+COMPOSITE_SOURCE_DIR = ../compositeFEM/src
+
+libcompositeFEM_la_CXXFLAGS = $(libamdis_la_CXXFLAGS)
+
+
+libcompositeFEM_la_SOURCES = $(COMPOSITE_SOURCE_DIR)/CFE_Integration.h \
+$(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc \
+$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.h \
+$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.cc \
+$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.h \
+$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.cc \
+$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.h \
+$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.cc \
+$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.h \
+$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.cc \
+$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.h \
+$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.cc \
+$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.h \
+$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.cc \
+$(COMPOSITE_SOURCE_DIR)/SubPolytope.h $(COMPOSITE_SOURCE_DIR)/SubPolytope.cc \
+$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.h \
+$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.cc \
+$(COMPOSITE_SOURCE_DIR)/TranslateLsFct.h
+
diff --git a/AMDiS/bin/Makefile.in b/AMDiS/src/Makefile.in
similarity index 65%
rename from AMDiS/bin/Makefile.in
rename to AMDiS/src/Makefile.in
index 170a84a7eee172aee3c76c2ddd8b0f709e2eb2bc..31009b58872ec1e6b71734edd9b1240f18051a19 100644
--- a/AMDiS/bin/Makefile.in
+++ b/AMDiS/src/Makefile.in
@@ -14,6 +14,7 @@
 
 @SET_MAKE@
 
+
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -37,18 +38,18 @@ POST_UNINSTALL = :
 build_triplet = @build@
 host_triplet = @host@
 @USE_PARALLEL_DOMAIN_AMDIS_TRUE@am__append_1 = \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  $(SOURCE_DIR)/parallel/StdMpi.h $(SOURCE_DIR)/parallel/StdMpi.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  $(SOURCE_DIR)/parallel/ParMetisPartitioner.h $(SOURCE_DIR)/parallel/ParMetisPartitioner.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  $(SOURCE_DIR)/parallel/ZoltanPartitioner.h $(SOURCE_DIR)/parallel/ZoltanPartitioner.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  $(SOURCE_DIR)/parallel/MeshDistributor.h $(SOURCE_DIR)/parallel/MeshDistributor.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  $(SOURCE_DIR)/parallel/MeshPartitioner.h $(SOURCE_DIR)/parallel/MeshPartitioner.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  $(SOURCE_DIR)/parallel/MeshManipulation.h $(SOURCE_DIR)/parallel/MeshManipulation.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  $(SOURCE_DIR)/parallel/ParallelDebug.h $(SOURCE_DIR)/parallel/ParallelDebug.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  $(SOURCE_DIR)/parallel/ParallelProblemStatBase.h \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  $(SOURCE_DIR)/parallel/ParallelProblemStatBase.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  $(SOURCE_DIR)/parallel/PetscSolver.h $(SOURCE_DIR)/parallel/PetscSolver.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  $(SOURCE_DIR)/parallel/MpiHelper.h $(SOURCE_DIR)/parallel/MpiHelper.cc \
-@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  $(SOURCE_DIR)/parallel/ElementObjectData.h $(SOURCE_DIR)/parallel/ElementObjectData.cc
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  parallel/StdMpi.h parallel/StdMpi.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  parallel/ParMetisPartitioner.h parallel/ParMetisPartitioner.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  parallel/ZoltanPartitioner.h parallel/ZoltanPartitioner.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  parallel/MeshDistributor.h parallel/MeshDistributor.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  parallel/MeshPartitioner.h parallel/MeshPartitioner.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  parallel/MeshManipulation.h parallel/MeshManipulation.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  parallel/ParallelDebug.h parallel/ParallelDebug.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  parallel/ParallelProblemStatBase.h \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  parallel/ParallelProblemStatBase.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  parallel/PetscSolver.h parallel/PetscSolver.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  parallel/MpiHelper.h parallel/MpiHelper.cc \
+@USE_PARALLEL_DOMAIN_AMDIS_TRUE@  parallel/ElementObjectData.h parallel/ElementObjectData.cc
 
 @USE_PARALLEL_DOMAIN_AMDIS_TRUE@am__append_2 = -DHAVE_PARALLEL_DOMAIN_AMDIS=1
 @USE_PARALLEL_DOMAIN_AMDIS_TRUE@am__append_3 = -I$(PARMETIS_DIR) \
@@ -66,8 +67,9 @@ host_triplet = @host@
 @ENABLE_BOOST_TRUE@am__append_9 = -DHAVE_BOOST=1
 @AMDIS_DEBUG_TRUE@am__append_10 = -g -O0 -Wall -DDEBUG=1 $(OPENMP_FLAG) $(INCLUDES) #-pedantic
 @AMDIS_DEBUG_FALSE@am__append_11 = -O3 -Wall -DDEBUG=0 -DNDEBUG $(OPENMP_FLAG) -ftemplate-depth-100 $(INCLUDES) #-pedantic
-subdir = bin
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+subdir = src
+DIST_COMMON = $(nobase_include_HEADERS) $(srcdir)/Makefile.am \
+	$(srcdir)/Makefile.in AUTHORS NEWS
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
@@ -80,185 +82,54 @@ am__vpath_adj = case $$p in \
     *) f=$$p;; \
   esac;
 am__strip_dir = `echo $$p | sed -e 's|^.*/||'`;
-am__installdirs = "$(DESTDIR)$(libdir)"
+am__installdirs = "$(DESTDIR)$(libdir)" "$(DESTDIR)$(includedir)"
 libLTLIBRARIES_INSTALL = $(INSTALL)
 LTLIBRARIES = $(lib_LTLIBRARIES)
 libamdis_la_LIBADD =
-am__libamdis_la_SOURCES_DIST = $(SOURCE_DIR)/parallel/StdMpi.h \
-	$(SOURCE_DIR)/parallel/StdMpi.cc \
-	$(SOURCE_DIR)/parallel/ParMetisPartitioner.h \
-	$(SOURCE_DIR)/parallel/ParMetisPartitioner.cc \
-	$(SOURCE_DIR)/parallel/ZoltanPartitioner.h \
-	$(SOURCE_DIR)/parallel/ZoltanPartitioner.cc \
-	$(SOURCE_DIR)/parallel/MeshDistributor.h \
-	$(SOURCE_DIR)/parallel/MeshDistributor.cc \
-	$(SOURCE_DIR)/parallel/MeshPartitioner.h \
-	$(SOURCE_DIR)/parallel/MeshPartitioner.cc \
-	$(SOURCE_DIR)/parallel/MeshManipulation.h \
-	$(SOURCE_DIR)/parallel/MeshManipulation.cc \
-	$(SOURCE_DIR)/parallel/ParallelDebug.h \
-	$(SOURCE_DIR)/parallel/ParallelDebug.cc \
-	$(SOURCE_DIR)/parallel/ParallelProblemStatBase.h \
-	$(SOURCE_DIR)/parallel/ParallelProblemStatBase.cc \
-	$(SOURCE_DIR)/parallel/PetscSolver.h \
-	$(SOURCE_DIR)/parallel/PetscSolver.cc \
-	$(SOURCE_DIR)/parallel/MpiHelper.h \
-	$(SOURCE_DIR)/parallel/MpiHelper.cc \
-	$(SOURCE_DIR)/parallel/ElementObjectData.h \
-	$(SOURCE_DIR)/parallel/ElementObjectData.cc \
-	$(SOURCE_DIR)/DOFIndexed.h $(SOURCE_DIR)/DOFIndexed.cc \
-	$(SOURCE_DIR)/io/GNUPlotWriter.h \
-	$(SOURCE_DIR)/io/GNUPlotWriter.cc $(SOURCE_DIR)/VertexVector.h \
-	$(SOURCE_DIR)/VertexVector.cc $(SOURCE_DIR)/PeriodicBC.h \
-	$(SOURCE_DIR)/PeriodicBC.cc $(SOURCE_DIR)/Recovery.h \
-	$(SOURCE_DIR)/Recovery.cc $(SOURCE_DIR)/RecoveryEstimator.h \
-	$(SOURCE_DIR)/RecoveryEstimator.cc \
-	$(SOURCE_DIR)/ResidualEstimator.h \
-	$(SOURCE_DIR)/ResidualEstimator.cc $(SOURCE_DIR)/Cholesky.h \
-	$(SOURCE_DIR)/Cholesky.cc $(SOURCE_DIR)/AdaptBase.h \
-	$(SOURCE_DIR)/AdaptBase.cc \
-	$(SOURCE_DIR)/ProblemIterationInterface.h \
-	$(SOURCE_DIR)/StandardProblemIteration.h \
-	$(SOURCE_DIR)/StandardProblemIteration.cc \
-	$(SOURCE_DIR)/ProblemScal.h $(SOURCE_DIR)/ProblemScal.cc \
-	$(SOURCE_DIR)/ProblemVec.h $(SOURCE_DIR)/ProblemVec.cc \
-	$(SOURCE_DIR)/ProblemVecDbg.h $(SOURCE_DIR)/ProblemVecDbg.cc \
-	$(SOURCE_DIR)/DualTraverse.h $(SOURCE_DIR)/DualTraverse.cc \
-	$(SOURCE_DIR)/ElementPartition_ED.h \
-	$(SOURCE_DIR)/SurfacePartition_ED.h \
-	$(SOURCE_DIR)/ElementData.h $(SOURCE_DIR)/ElementData.cc \
-	$(SOURCE_DIR)/ComponentTraverseInfo.h \
-	$(SOURCE_DIR)/ComponentTraverseInfo.cc \
-	$(SOURCE_DIR)/CreatorMap.h $(SOURCE_DIR)/CreatorMap.hh \
-	$(SOURCE_DIR)/CreatorMap.cc $(SOURCE_DIR)/CreatorInterface.h \
-	$(SOURCE_DIR)/ElementFunction.h \
-	$(SOURCE_DIR)/ProblemInterpolScal.h \
-	$(SOURCE_DIR)/ProblemInterpolScal.cc \
-	$(SOURCE_DIR)/ProblemInterpolVec.h \
-	$(SOURCE_DIR)/ProblemInterpolVec.cc \
-	$(SOURCE_DIR)/Serializable.h $(SOURCE_DIR)/Serializer.cc \
-	$(SOURCE_DIR)/BallProject.h $(SOURCE_DIR)/CylinderProject.h \
-	$(SOURCE_DIR)/io/MacroInfo.h $(SOURCE_DIR)/io/MacroInfo.cc \
-	$(SOURCE_DIR)/io/MacroReader.h $(SOURCE_DIR)/io/MacroReader.cc \
-	$(SOURCE_DIR)/io/ValueReader.h $(SOURCE_DIR)/io/ValueReader.cc \
-	$(SOURCE_DIR)/Projection.h $(SOURCE_DIR)/Projection.cc \
-	$(SOURCE_DIR)/SubAssembler.h $(SOURCE_DIR)/SubAssembler.cc \
-	$(SOURCE_DIR)/ZeroOrderAssembler.h \
-	$(SOURCE_DIR)/ZeroOrderAssembler.cc \
-	$(SOURCE_DIR)/FirstOrderAssembler.h \
-	$(SOURCE_DIR)/FirstOrderAssembler.cc \
-	$(SOURCE_DIR)/SecondOrderAssembler.h \
-	$(SOURCE_DIR)/SecondOrderAssembler.cc \
-	$(SOURCE_DIR)/Assembler.h $(SOURCE_DIR)/Assembler.cc \
-	$(SOURCE_DIR)/AdaptInfo.h $(SOURCE_DIR)/AdaptInfo.cc \
-	$(SOURCE_DIR)/Marker.h $(SOURCE_DIR)/Marker.cc \
-	$(SOURCE_DIR)/SystemVector.h $(SOURCE_DIR)/SurfaceQuadrature.h \
-	$(SOURCE_DIR)/SurfaceQuadrature.cc $(SOURCE_DIR)/LeafData.h \
-	$(SOURCE_DIR)/LeafData.cc $(SOURCE_DIR)/BoundaryManager.h \
-	$(SOURCE_DIR)/BoundaryManager.cc \
-	$(SOURCE_DIR)/BoundaryCondition.h $(SOURCE_DIR)/DirichletBC.h \
-	$(SOURCE_DIR)/DirichletBC.cc $(SOURCE_DIR)/RobinBC.h \
-	$(SOURCE_DIR)/RobinBC.cc $(SOURCE_DIR)/AbstractFunction.h \
-	$(SOURCE_DIR)/ProblemStatBase.h $(SOURCE_DIR)/DOFContainer.h \
-	$(SOURCE_DIR)/io/FileWriter.h $(SOURCE_DIR)/io/FileWriter.hh \
-	$(SOURCE_DIR)/io/FileWriter.cc \
-	$(SOURCE_DIR)/io/ElementFileWriter.h \
-	$(SOURCE_DIR)/io/ElementFileWriter.cc $(SOURCE_DIR)/ElInfo.cc \
-	$(SOURCE_DIR)/ElInfoStack.h $(SOURCE_DIR)/ElInfoStack.cc \
-	$(SOURCE_DIR)/OperatorTerm.h $(SOURCE_DIR)/OperatorTerm.cc \
-	$(SOURCE_DIR)/ZeroOrderTerm.h $(SOURCE_DIR)/ZeroOrderTerm.cc \
-	$(SOURCE_DIR)/FirstOrderTerm.h $(SOURCE_DIR)/FirstOrderTerm.cc \
-	$(SOURCE_DIR)/SecondOrderTerm.h \
-	$(SOURCE_DIR)/SecondOrderTerm.cc $(SOURCE_DIR)/Operator.h \
-	$(SOURCE_DIR)/Operator.cc $(SOURCE_DIR)/Mesh.cc \
-	$(SOURCE_DIR)/MeshStructure.h $(SOURCE_DIR)/MeshStructure.cc \
-	$(SOURCE_DIR)/MeshStructure_ED.h $(SOURCE_DIR)/AMDiS.h \
-	$(SOURCE_DIR)/AdaptStationary.h \
-	$(SOURCE_DIR)/AdaptStationary.cc \
-	$(SOURCE_DIR)/AdaptInstationary.h \
-	$(SOURCE_DIR)/AdaptInstationary.cc $(SOURCE_DIR)/QPsiPhi.h \
-	$(SOURCE_DIR)/BasisFunction.h $(SOURCE_DIR)/Boundary.h \
-	$(SOURCE_DIR)/ITL_Solver.h $(SOURCE_DIR)/CoarseningManager.h \
-	$(SOURCE_DIR)/CoarseningManager1d.h \
-	$(SOURCE_DIR)/CoarseningManager2d.h \
-	$(SOURCE_DIR)/CoarseningManager3d.h $(SOURCE_DIR)/DOFAdmin.h \
-	$(SOURCE_DIR)/DOFIterator.h $(SOURCE_DIR)/DOFMatrix.h \
-	$(SOURCE_DIR)/DOFVector.h $(SOURCE_DIR)/DOFVector.hh \
-	$(SOURCE_DIR)/DOFVector.cc $(SOURCE_DIR)/Element.h \
-	$(SOURCE_DIR)/ElementConnection.h $(SOURCE_DIR)/ElInfo.h \
-	$(SOURCE_DIR)/ElInfo1d.h $(SOURCE_DIR)/ElInfo2d.h \
-	$(SOURCE_DIR)/ElInfo3d.h $(SOURCE_DIR)/Error.h \
-	$(SOURCE_DIR)/Error.hh $(SOURCE_DIR)/Estimator.h \
-	$(SOURCE_DIR)/Estimator.cc $(SOURCE_DIR)/FiniteElemSpace.h \
-	$(SOURCE_DIR)/FixVec.h $(SOURCE_DIR)/FixVec.hh \
-	$(SOURCE_DIR)/FixVecConvert.h $(SOURCE_DIR)/Flag.h \
-	$(SOURCE_DIR)/Global.h $(SOURCE_DIR)/UmfPackSolver.h \ \
-	$(SOURCE_DIR)/UmfPackSolver.hh $(SOURCE_DIR)/Lagrange.h \
-	$(SOURCE_DIR)/Line.h $(SOURCE_DIR)/MacroElement.h \
-	$(SOURCE_DIR)/MacroWriter.h $(SOURCE_DIR)/Markings.h \
-	$(SOURCE_DIR)/Markings.hh $(SOURCE_DIR)/Mesh.h \
-	$(SOURCE_DIR)/Parameters.h $(SOURCE_DIR)/Parametric.h \
-	$(SOURCE_DIR)/Quadrature.h $(SOURCE_DIR)/RCNeighbourList.h \
-	$(SOURCE_DIRe)/RefinementManager.h \
-	$(SOURCE_DIR)/RefinementManager1d.h \
-	$(SOURCE_DIR)/RefinementManager2d.h \
-	$(SOURCE_DIR)/RefinementManager3d.h \
-	$(SOURCE_DIR)/Tetrahedron.h $(SOURCE_DIR)/Traverse.h \
-	$(SOURCE_DIR)/Triangle.h $(SOURCE_DIR)/NonLinSolver.h \
-	$(SOURCE_DIR)/NonLinSolver.hh $(SOURCE_DIR)/ProblemInstat.h \
-	$(SOURCE_DIR)/ProblemInstat.cc \
-	$(SOURCE_DIR)/ProblemTimeInterface.h \
-	$(SOURCE_DIR)/ProblemNonLin.h $(SOURCE_DIR)/ProblemNonLin.cc \
-	$(SOURCE_DIR)/NonLinUpdater.h $(SOURCE_DIR)/NonLinUpdater.cc \
-	$(SOURCE_DIR)/Newton.h $(SOURCE_DIR)/Newton.hh \
-	$(SOURCE_DIR)/NewtonFS.h $(SOURCE_DIR)/NewtonFS.hh \
-	$(SOURCE_DIR)/io/GridWriter.h $(SOURCE_DIR)/io/GridWriter.hh \
-	$(SOURCE_DIR)/io/ValueWriter.h $(SOURCE_DIR)/QPsiPhi.cc \
-	$(SOURCE_DIR)/BasisFunction.cc $(SOURCE_DIR)/Boundary.cc \
-	$(SOURCE_DIR)/CoarseningManager.cc \
-	$(SOURCE_DIR)/CoarseningManager1d.cc \
-	$(SOURCE_DIR)/CoarseningManager2d.cc \
-	$(SOURCE_DIR)/CoarseningManager3d.cc $(SOURCE_DIR)/DOFAdmin.cc \
-	$(SOURCE_DIR)/DOFMatrix.cc $(SOURCE_DIR)/Element.cc \
-	$(SOURCE_DIR)/ElInfo1d.cc $(SOURCE_DIR)/ElInfo2d.cc \
-	$(SOURCE_DIR)/ElInfo3d.cc $(SOURCE_DIR)/FiniteElemSpace.cc \
-	$(SOURCE_DIR)/FixVec.cc $(SOURCE_DIR)/Global.cc \
-	$(SOURCE_DIR)/Lagrange.cc $(SOURCE_DIR)/Line.cc \
-	$(SOURCE_DIR)/MacroElement.cc $(SOURCE_DIR)/io/MacroWriter.cc \
-	$(SOURCE_DIR)/Parameters.cc $(SOURCE_DIR)/Parametric.cc \
-	$(SOURCE_DIR)/Quadrature.cc $(SOURCE_DIR)/RCNeighbourList.cc \
-	$(SOURCE_DIR)/RefinementManager.cc \
-	$(SOURCE_DIR)/RefinementManager1d.cc \
-	$(SOURCE_DIR)/RefinementManager2d.cc \
-	$(SOURCE_DIR)/RefinementManager3d.cc \
-	$(SOURCE_DIR)/Tetrahedron.cc $(SOURCE_DIR)/Traverse.cc \
-	$(SOURCE_DIR)/TraverseParallel.h \
-	$(SOURCE_DIR)/TraverseParallel.cc $(SOURCE_DIR)/Triangle.cc \
-	$(SOURCE_DIR)/io/ValueWriter.cc $(SOURCE_DIR)/io/VtkWriter.h \
-	$(SOURCE_DIR)/io/VtkWriter.cc $(SOURCE_DIR)/io/DofWriter.h \
-	$(SOURCE_DIR)/io/DofWriter.cc $(SOURCE_DIR)/io/PngWriter.h \
-	$(SOURCE_DIR)/io/PngWriter.cc $(SOURCE_DIR)/io/PovrayWriter.h \
-	$(SOURCE_DIR)/io/PovrayWriter.cc \
-	$(SOURCE_DIR)/io/DataCollector.h \
-	$(SOURCE_DIR)/io/DataCollector.cc $(SOURCE_DIR)/ElementInfo.h \
-	$(SOURCE_DIR)/VertexInfo.h $(SOURCE_DIR)/PeriodicInfo.h \
-	$(SOURCE_DIR)/OpenMP.h $(SOURCE_DIR)/ScalableQuadrature.h \
-	$(SOURCE_DIR)/ScalableQuadrature.cc $(SOURCE_DIR)/SubElInfo.h \
-	$(SOURCE_DIR)/SubElInfo.cc $(SOURCE_DIR)/SolutionDataStorage.h \
-	$(SOURCE_DIR)/SolutionDataStorage.hh \
-	$(SOURCE_DIR)/ElementDofIteartor.h \
-	$(SOURCE_DIR)/ElementDofIterator.cc \
-	$(SOURCE_DIR)/parallel/InteriorBoundary.h \
-	$(SOURCE_DIR)/parallel/InteriorBoundary.cc \
-	$(SOURCE_DIR)/Debug.h $(SOURCE_DIR)/Debug.cc \
-	$(SOURCE_DIR)/io/ArhReader.h $(SOURCE_DIR)/io/ArhReader.cc \
-	$(SOURCE_DIR)/io/ArhWriter.h $(SOURCE_DIR)/io/ArhWriter.cc \
-	$(SOURCE_DIR)/time/RosenbrockAdaptInstationary.h \
-	$(SOURCE_DIR)/time/RosenbrockAdaptInstationary.cc \
-	$(SOURCE_DIR)/time/RosenbrockStationary.h \
-	$(SOURCE_DIR)/time/RosenbrockStationary.cc \
-	$(SOURCE_DIR)/time/RosenbrockMethod.h \
-	$(SOURCE_DIR)/time/RosenbrockMethod.cc
+am__libamdis_la_SOURCES_DIST = parallel/StdMpi.h parallel/StdMpi.cc \
+	parallel/ParMetisPartitioner.h parallel/ParMetisPartitioner.cc \
+	parallel/ZoltanPartitioner.h parallel/ZoltanPartitioner.cc \
+	parallel/MeshDistributor.h parallel/MeshDistributor.cc \
+	parallel/MeshPartitioner.h parallel/MeshPartitioner.cc \
+	parallel/MeshManipulation.h parallel/MeshManipulation.cc \
+	parallel/ParallelDebug.h parallel/ParallelDebug.cc \
+	parallel/ParallelProblemStatBase.h \
+	parallel/ParallelProblemStatBase.cc parallel/PetscSolver.h \
+	parallel/PetscSolver.cc parallel/MpiHelper.h \
+	parallel/MpiHelper.cc parallel/ElementObjectData.h \
+	parallel/ElementObjectData.cc DOFIndexed.cc \
+	io/GNUPlotWriter.cc VertexVector.cc PeriodicBC.cc Recovery.cc \
+	RecoveryEstimator.cc ResidualEstimator.cc Cholesky.cc \
+	AdaptBase.cc StandardProblemIteration.cc ProblemScal.cc \
+	ProblemVec.cc ProblemVecDbg.cc DualTraverse.cc ElementData.cc \
+	ComponentTraverseInfo.cc CreatorMap.cc ProblemInterpolScal.cc \
+	ProblemInterpolVec.cc Serializer.cc io/MacroInfo.cc \
+	io/MacroReader.cc io/ValueReader.cc Projection.cc \
+	SubAssembler.cc ZeroOrderAssembler.cc FirstOrderAssembler.cc \
+	SecondOrderAssembler.cc Assembler.cc AdaptInfo.cc Marker.cc \
+	SurfaceQuadrature.cc LeafData.cc BoundaryManager.cc \
+	DirichletBC.cc RobinBC.cc io/FileWriter.cc \
+	io/ElementFileWriter.cc ElInfo.cc ElInfoStack.cc \
+	OperatorTerm.cc ZeroOrderTerm.cc FirstOrderTerm.cc \
+	SecondOrderTerm.cc Operator.cc Mesh.cc MeshStructure.cc \
+	AdaptStationary.cc AdaptInstationary.cc DOFVector.cc \
+	Estimator.cc ProblemInstat.cc ProblemNonLin.cc \
+	NonLinUpdater.cc QPsiPhi.cc BasisFunction.cc Boundary.cc \
+	CoarseningManager.cc CoarseningManager1d.cc \
+	CoarseningManager2d.cc CoarseningManager3d.cc DOFAdmin.cc \
+	DOFMatrix.cc Element.cc ElInfo1d.cc ElInfo2d.cc ElInfo3d.cc \
+	FiniteElemSpace.cc FixVec.cc Global.cc Lagrange.cc Line.cc \
+	MacroElement.cc io/MacroWriter.cc Parameters.cc Parametric.cc \
+	Quadrature.cc RCNeighbourList.cc RefinementManager.cc \
+	RefinementManager1d.cc RefinementManager2d.cc \
+	RefinementManager3d.cc Tetrahedron.cc Traverse.cc \
+	TraverseParallel.cc Triangle.cc io/ValueWriter.cc \
+	io/VtkWriter.cc io/DofWriter.cc io/PngWriter.cc \
+	io/PovrayWriter.cc io/DataCollector.cc ScalableQuadrature.cc \
+	SubElInfo.cc ElementDofIterator.cc \
+	parallel/InteriorBoundary.cc Debug.cc io/ArhReader.cc \
+	io/ArhWriter.cc time/RosenbrockAdaptInstationary.cc \
+	time/RosenbrockStationary.cc time/RosenbrockMethod.cc
 @USE_PARALLEL_DOMAIN_AMDIS_TRUE@am__objects_1 = libamdis_la-StdMpi.lo \
 @USE_PARALLEL_DOMAIN_AMDIS_TRUE@	libamdis_la-ParMetisPartitioner.lo \
 @USE_PARALLEL_DOMAIN_AMDIS_TRUE@	libamdis_la-ZoltanPartitioner.lo \
@@ -364,6 +235,8 @@ LINK = $(LIBTOOL) --tag=CC --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
 SOURCES = $(libamdis_la_SOURCES) $(libcompositeFEM_la_SOURCES)
 DIST_SOURCES = $(am__libamdis_la_SOURCES_DIST) \
 	$(libcompositeFEM_la_SOURCES)
+nobase_includeHEADERS_INSTALL = $(install_sh_DATA)
+HEADERS = $(nobase_include_HEADERS)
 ETAGS = etags
 CTAGS = ctags
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
@@ -439,6 +312,7 @@ PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PETSC_DIR = @PETSC_DIR@
 RANLIB = @RANLIB@
+SED = @SED@
 SET_MAKE = @SET_MAKE@
 SHELL = @SHELL@
 STRIP = @STRIP@
@@ -491,7 +365,6 @@ sharedstatedir = @sharedstatedir@
 sysconfdir = @sysconfdir@
 target_alias = @target_alias@
 lib_LTLIBRARIES = libamdis.la libcompositeFEM.la
-SOURCE_DIR = ../src
 LIB_DIR = ../lib
 PARALLEL_DIR = $(SOURCE_DIR)
 PARMETIS_DIR = ../lib/ParMetis-3.1
@@ -504,168 +377,285 @@ PARALLEL_AMDIS_SOURCES = $(am__append_1)
 PARALLEL_INCLUDES = 
 TEMPLATE_INCLUDES = -I../lib/mtl4 
 INCLUDES = $(AMDIS_INCLUDES) $(PARALLEL_INCLUDES) $(TEMPLATE_INCLUDES)
+nobase_include_HEADERS = \
+AMDiS.h \
+AMDiS_fwd.h \
+AbstractFunction.h \
+AdaptBase.h \
+AdaptInfo.h \
+AdaptInstationary.h \
+AdaptStationary.h \
+Assembler.h \
+BallProject.h \
+BasisFunction.h \
+Boundary.h \
+BoundaryCondition.h \
+BoundaryManager.h \
+Cholesky.h \
+CoarseningManager.h \
+CoarseningManager1d.h \
+CoarseningManager2d.h \
+CoarseningManager3d.h \
+ComponentTraverseInfo.h \
+CouplingTimeInterface.h \
+CreatorInterface.h \
+CreatorMap.h \
+CreatorMap.hh \
+CylinderProject.h \
+DOFAdmin.h \
+DOFContainer.h \
+DOFIndexed.h \
+DOFIterator.h \
+DOFMatrix.h \
+DOFVector.h \
+DOFVector.hh \
+Debug.h \
+DirichletBC.h \
+DualTraverse.h \
+ElInfo.h \
+ElInfo1d.h \
+ElInfo2d.h \
+ElInfo3d.h \
+ElInfoStack.h \
+Element.h \
+Element.hh \
+ElementData.h \
+ElementDofIterator.h \
+ElementFunction.h \
+ElementInfo.h \
+ElementRegion_ED.h \
+EmptyElementData.h \
+Error.h \
+Error.hh \
+Estimator.h \
+FiniteElemSpace.h \
+FirstOrderAssembler.h \
+FirstOrderTerm.h \
+FixVec.h \
+FixVec.hh \
+FixVecConvert.h \
+Flag.h \
+Global.h \
+GlobalDOFNumbering.h \
+GlobalElementNumbering.h \
+ITL_OEMSolver.h \
+ITL_Preconditioner.h \
+ITL_Solver.h \
+Lagrange.h \
+LeafData.h \
+Line.h \
+MacroElement.h \
+Marker.h \
+MathFunctions.h \
+MatrixVector.h \
+Mesh.h \
+MeshStructure.h \
+MeshStructure_ED.h \
+MpCCIAdapter.h \
+Newton.h \
+Newton.hh \
+NewtonS.h \
+NewtonS.hh \
+NonLinSolver.h \
+NonLinSolver.hh \
+NonLinUpdater.h \
+OEMSolver.h \
+OpenMP.h \
+Operator.h \
+Operator.hh \
+OperatorTerm.h \
+OperatorTerm.hh \
+Parameters.h \
+Parametric.h \
+PardisoSolver.h \
+PardisoSolver.hh \
+PeriodicBC.h \
+PeriodicConnection.h \
+PeriodicInfo.h \
+PeriodicMap.h \
+ProblemImplicit.h \
+ProblemInstat.h \
+ProblemInterpolScal.h \
+ProblemInterpolVec.h \
+ProblemIterationInterface.h \
+ProblemNonLin.h \
+ProblemScal.h \
+ProblemStatBase.h \
+ProblemTimeInterface.h \
+ProblemVec.h \
+ProblemVecDbg.h \
+Projection.h \
+QPInfo.h \
+QPsiPhi.h \
+Quadrature.h \
+Quadrature.hh \
+RCNeighbourList.h \
+Recovery.h \
+RecoveryEstimator.h \
+RefinementManager.h \
+RefinementManager1d.h \
+RefinementManager2d.h \
+RefinementManager3d.h \
+ResidualEstimator.h \
+ResidualParallelEstimator.h \
+RobinBC.h \
+RobinBC.hh \
+SMIAdapter.h \
+ScalableQuadrature.h \
+SecondOrderAssembler.h \
+SecondOrderTerm.h \
+Serializable.h \
+Serializer.h \
+SolutionDataStorage.h \
+SolutionDataStorage.hh \
+SolverMatrix.h \
+StandardProblemIteration.h \
+SubAssembler.h \
+SubAssembler.hh \
+SubElInfo.h \
+SubQuadrature.h \
+SurfaceAssembler.h \
+SurfaceOperator.h \
+SurfaceQuadrature.h \
+SurfaceRegion_ED.h \
+SystemVector.h \
+Tetrahedron.h \
+TimedObject.h \
+Traverse.h \
+TraverseParallel.h \
+Triangle.h \
+UmfPackSolver.h \
+VertexInfo.h \
+VertexVector.h \
+ZeroOrderAssembler.h \
+ZeroOrderTerm.h \
+io/ArhReader.h \
+io/ArhWriter.h \
+io/DataCollector.h \
+io/DofWriter.h \
+io/ElementFileWriter.h \
+io/FileWriter.h \
+io/GNUPlotWriter.h \
+io/GridWriter.h \
+io/GridWriter.hh \
+io/MacroInfo.h \
+io/MacroReader.h \
+io/MacroWriter.h \
+io/PngWriter.h \
+io/PovrayWriter.h \
+io/ValueReader.h \
+io/ValueWriter.h \
+io/VtkWriter.h \
+io/VtkWriter.hh \
+parallel/InteriorBoundary.h \
+time/RosenbrockAdaptInstationary.h \
+time/RosenbrockStationary.h \
+time/RosenbrockMethod.h 
+
 libamdis_la_SOURCES = \
 $(PARALLEL_AMDIS_SOURCES) \
-$(SOURCE_DIR)/DOFIndexed.h $(SOURCE_DIR)/DOFIndexed.cc \
-$(SOURCE_DIR)/io/GNUPlotWriter.h $(SOURCE_DIR)/io/GNUPlotWriter.cc \
-$(SOURCE_DIR)/VertexVector.h $(SOURCE_DIR)/VertexVector.cc \
-$(SOURCE_DIR)/PeriodicBC.h $(SOURCE_DIR)/PeriodicBC.cc \
-$(SOURCE_DIR)/Recovery.h $(SOURCE_DIR)/Recovery.cc \
-$(SOURCE_DIR)/RecoveryEstimator.h $(SOURCE_DIR)/RecoveryEstimator.cc \
-$(SOURCE_DIR)/ResidualEstimator.h $(SOURCE_DIR)/ResidualEstimator.cc \
-$(SOURCE_DIR)/Cholesky.h $(SOURCE_DIR)/Cholesky.cc \
-$(SOURCE_DIR)/AdaptBase.h $(SOURCE_DIR)/AdaptBase.cc \
-$(SOURCE_DIR)/ProblemIterationInterface.h \
-$(SOURCE_DIR)/StandardProblemIteration.h $(SOURCE_DIR)/StandardProblemIteration.cc \
-$(SOURCE_DIR)/ProblemScal.h $(SOURCE_DIR)/ProblemScal.cc \
-$(SOURCE_DIR)/ProblemVec.h $(SOURCE_DIR)/ProblemVec.cc \
-$(SOURCE_DIR)/ProblemVecDbg.h $(SOURCE_DIR)/ProblemVecDbg.cc \
-$(SOURCE_DIR)/DualTraverse.h $(SOURCE_DIR)/DualTraverse.cc \
-$(SOURCE_DIR)/ElementPartition_ED.h $(SOURCE_DIR)/SurfacePartition_ED.h \
-$(SOURCE_DIR)/ElementData.h $(SOURCE_DIR)/ElementData.cc \
-$(SOURCE_DIR)/ComponentTraverseInfo.h $(SOURCE_DIR)/ComponentTraverseInfo.cc \
-$(SOURCE_DIR)/CreatorMap.h $(SOURCE_DIR)/CreatorMap.hh $(SOURCE_DIR)/CreatorMap.cc \
-$(SOURCE_DIR)/CreatorInterface.h \
-$(SOURCE_DIR)/ElementFunction.h \
-$(SOURCE_DIR)/ProblemInterpolScal.h $(SOURCE_DIR)/ProblemInterpolScal.cc \
-$(SOURCE_DIR)/ProblemInterpolVec.h $(SOURCE_DIR)/ProblemInterpolVec.cc \
-$(SOURCE_DIR)/Serializable.h \
-$(SOURCE_DIR)/Serializer.cc \
-$(SOURCE_DIR)/BallProject.h \
-$(SOURCE_DIR)/CylinderProject.h \
-$(SOURCE_DIR)/io/MacroInfo.h $(SOURCE_DIR)/io/MacroInfo.cc \
-$(SOURCE_DIR)/io/MacroReader.h $(SOURCE_DIR)/io/MacroReader.cc \
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 COMPOSITE_SOURCE_DIR = ../compositeFEM/src
 libcompositeFEM_la_CXXFLAGS = $(libamdis_la_CXXFLAGS)
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 	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  bin/Makefile
+	  $(AUTOMAKE) --gnu  src/Makefile
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-@am__fastdepCXX_TRUE@	if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-RosenbrockMethod.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-RosenbrockMethod.Tpo" -c -o libamdis_la-RosenbrockMethod.lo `test -f '$(SOURCE_DIR)/time/RosenbrockMethod.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/time/RosenbrockMethod.cc; \
+libamdis_la-RosenbrockMethod.lo: time/RosenbrockMethod.cc
+@am__fastdepCXX_TRUE@	if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-RosenbrockMethod.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-RosenbrockMethod.Tpo" -c -o libamdis_la-RosenbrockMethod.lo `test -f 'time/RosenbrockMethod.cc' || echo '$(srcdir)/'`time/RosenbrockMethod.cc; \
 @am__fastdepCXX_TRUE@	then mv -f "$(DEPDIR)/libamdis_la-RosenbrockMethod.Tpo" "$(DEPDIR)/libamdis_la-RosenbrockMethod.Plo"; else rm -f "$(DEPDIR)/libamdis_la-RosenbrockMethod.Tpo"; exit 1; fi
-@AMDEP_TRUE@@am__fastdepCXX_FALSE@	source='$(SOURCE_DIR)/time/RosenbrockMethod.cc' object='libamdis_la-RosenbrockMethod.lo' libtool=yes @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCXX_FALSE@	source='time/RosenbrockMethod.cc' object='libamdis_la-RosenbrockMethod.lo' libtool=yes @AMDEPBACKSLASH@
 @AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
-@am__fastdepCXX_FALSE@	$(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -c -o libamdis_la-RosenbrockMethod.lo `test -f '$(SOURCE_DIR)/time/RosenbrockMethod.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/time/RosenbrockMethod.cc
+@am__fastdepCXX_FALSE@	$(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -c -o libamdis_la-RosenbrockMethod.lo `test -f 'time/RosenbrockMethod.cc' || echo '$(srcdir)/'`time/RosenbrockMethod.cc
 
 libcompositeFEM_la-CFE_Integration.lo: $(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc
 @am__fastdepCXX_TRUE@	if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libcompositeFEM_la_CXXFLAGS) $(CXXFLAGS) -MT libcompositeFEM_la-CFE_Integration.lo -MD -MP -MF "$(DEPDIR)/libcompositeFEM_la-CFE_Integration.Tpo" -c -o libcompositeFEM_la-CFE_Integration.lo `test -f '$(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc' || echo '$(srcdir)/'`$(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc; \
@@ -1766,6 +1756,25 @@ clean-libtool:
 distclean-libtool:
 	-rm -f libtool
 uninstall-info-am:
+install-nobase_includeHEADERS: $(nobase_include_HEADERS)
+	@$(NORMAL_INSTALL)
+	test -z "$(includedir)" || $(mkdir_p) "$(DESTDIR)$(includedir)"
+	@$(am__vpath_adj_setup) \
+	list='$(nobase_include_HEADERS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  $(am__vpath_adj) \
+	  echo " $(nobase_includeHEADERS_INSTALL) '$$d$$p' '$(DESTDIR)$(includedir)/$$f'"; \
+	  $(nobase_includeHEADERS_INSTALL) "$$d$$p" "$(DESTDIR)$(includedir)/$$f"; \
+	done
+
+uninstall-nobase_includeHEADERS:
+	@$(NORMAL_UNINSTALL)
+	@$(am__vpath_adj_setup) \
+	list='$(nobase_include_HEADERS)'; for p in $$list; do \
+	  $(am__vpath_adj) \
+	  echo " rm -f '$(DESTDIR)$(includedir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(includedir)/$$f"; \
+	done
 
 ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
 	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
@@ -1816,6 +1825,7 @@ distclean-tags:
 	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
 
 distdir: $(DISTFILES)
+	$(mkdir_p) $(distdir)/io $(distdir)/parallel $(distdir)/time
 	@srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \
 	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's|.|.|g'`; \
 	list='$(DISTFILES)'; for file in $$list; do \
@@ -1844,9 +1854,9 @@ distdir: $(DISTFILES)
 	done
 check-am: all-am
 check: check-am
-all-am: Makefile $(LTLIBRARIES)
+all-am: Makefile $(LTLIBRARIES) $(HEADERS)
 installdirs:
-	for dir in "$(DESTDIR)$(libdir)"; do \
+	for dir in "$(DESTDIR)$(libdir)" "$(DESTDIR)$(includedir)"; do \
 	  test -z "$$dir" || $(mkdir_p) "$$dir"; \
 	done
 install: install-am
@@ -1894,7 +1904,7 @@ info: info-am
 
 info-am:
 
-install-data-am:
+install-data-am: install-nobase_includeHEADERS
 
 install-exec-am: install-libLTLIBRARIES
 
@@ -1922,7 +1932,8 @@ ps: ps-am
 
 ps-am:
 
-uninstall-am: uninstall-info-am uninstall-libLTLIBRARIES
+uninstall-am: uninstall-info-am uninstall-libLTLIBRARIES \
+	uninstall-nobase_includeHEADERS
 
 .PHONY: CTAGS GTAGS all all-am check check-am clean clean-generic \
 	clean-libLTLIBRARIES clean-libtool ctags distclean \
@@ -1930,12 +1941,13 @@ uninstall-am: uninstall-info-am uninstall-libLTLIBRARIES
 	distclean-tags distdir dvi dvi-am html html-am info info-am \
 	install install-am install-data install-data-am install-exec \
 	install-exec-am install-info install-info-am \
-	install-libLTLIBRARIES install-man install-strip installcheck \
+	install-libLTLIBRARIES install-man \
+	install-nobase_includeHEADERS install-strip installcheck \
 	installcheck-am installdirs maintainer-clean \
 	maintainer-clean-generic mostlyclean mostlyclean-compile \
 	mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
 	tags uninstall uninstall-am uninstall-info-am \
-	uninstall-libLTLIBRARIES
+	uninstall-libLTLIBRARIES uninstall-nobase_includeHEADERS
 
 # Tell versions [3.59,3.63) of GNU make to not export all variables.
 # Otherwise a system limit (for SysV at least) may be exceeded.