diff --git a/AMDiS/libtool b/AMDiS/libtool
index 730f91e3bbf372aaf166baad9d5d517ae0252bc6..c11ad13267993f3625e7cfd3b480b4ed83313116 100755
--- a/AMDiS/libtool
+++ b/AMDiS/libtool
@@ -85,7 +85,7 @@ NM="/usr/bin/nm -B"
LN_S="ln -s"
# What is the maximum length of a command?
-max_cmd_len=1572864
+max_cmd_len=98304
# Object file suffix (normally "o").
objext=o
@@ -128,7 +128,7 @@ old_postinstall_cmds="chmod 644 \$oldlib~\$RANLIB \$oldlib"
old_postuninstall_cmds=""
# A C compiler.
-LTCC="/usr/lib64/mpi/gcc/openmpi//bin/mpicc"
+LTCC="gcc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
@@ -233,10 +233,10 @@ finish_eval=""
hardcode_into_libs=yes
# Compile-time system search path for libraries.
-sys_lib_search_path_spec="/usr/lib64/gcc/x86_64-suse-linux/4.5 /usr/lib64 /lib64 /usr/x86_64-suse-linux/lib"
+sys_lib_search_path_spec="/usr/lib64/gcc/x86_64-suse-linux/4.1.2 /usr/lib64 /lib64 /fastfs/wir/local/lib /usr/x86_64-suse-linux/lib"
# Run-time system search path for libraries.
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/lib64/Xaw3d /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/lib/Xaw3d /usr/x86_64-suse-linux/lib /usr/local/lib /opt/kde3/lib /lib64 /lib /usr/lib64 /usr/lib /usr/local/lib64 /opt/kde3/lib64 /usr/lib64/graphviz /usr/lib64/graphviz/sharp /usr/lib64/graphviz/java /usr/lib64/graphviz/perl /usr/lib64/graphviz/php /usr/lib64/graphviz/ocaml /usr/lib64/graphviz/python /usr/lib64/graphviz/lua /usr/lib64/graphviz/tcl /usr/lib64/graphviz/guile /usr/lib64/graphviz/ruby /usr/lib64/octave-3.2.4 "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Whether dlopen is supported.
dlopen_support=unknown
@@ -259,7 +259,7 @@ LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
old_archive_cmds="\$AR \$AR_FLAGS \$oldlib\$oldobjs~\$RANLIB \$oldlib"
# A language specific compiler.
-CC="/usr/lib64/mpi/gcc/openmpi//bin/mpicc"
+CC="gcc"
# Is the compiler the GNU compiler?
with_gcc=yes
@@ -274,7 +274,7 @@ wl="-Wl,"
pic_flag=" -fPIC -DPIC"
# Compiler flag to prevent dynamic linking.
-link_static_flag=""
+link_static_flag="-static"
# Does compiler simultaneously support -c and -o options?
compiler_c_o="yes"
@@ -8914,7 +8914,7 @@ LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
old_archive_cmds="\$AR \$AR_FLAGS \$oldlib\$oldobjs~\$RANLIB \$oldlib"
# A language specific compiler.
-CC="/usr/lib64/mpi/gcc/openmpi//bin/mpicxx"
+CC="g++"
# Is the compiler the GNU compiler?
with_gcc=yes
@@ -8929,7 +8929,7 @@ wl="-Wl,"
pic_flag=" -fPIC -DPIC"
# Compiler flag to prevent dynamic linking.
-link_static_flag=""
+link_static_flag="-static"
# Does compiler simultaneously support -c and -o options?
compiler_c_o="yes"
@@ -9039,17 +9039,17 @@ file_list_spec=""
hardcode_action=immediate
# The directories searched by this compiler when creating a shared library.
-compiler_lib_search_dirs="/usr/lib64/mpi/gcc/openmpi/lib64 /usr/lib64/gcc/x86_64-suse-linux/4.5 /usr/lib64/gcc/x86_64-suse-linux/4.5/../../../../lib64 /lib/../lib64 /usr/lib/../lib64 /usr/lib64/gcc/x86_64-suse-linux/4.5/../../../../x86_64-suse-linux/lib /usr/lib64/gcc/x86_64-suse-linux/4.5/../../.."
+compiler_lib_search_dirs="/usr/lib64/gcc/x86_64-suse-linux/4.1.2 /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 /lib/../lib64 /usr/lib/../lib64 /fastfs/wir/local/lib /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
# Dependencies to place before and after the objects being linked to
# create a shared library.
-predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.5/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.5/crtbeginS.o"
-postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.5/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.5/../../../../lib64/crtn.o"
+predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o"
+postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o"
predeps=""
-postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
+postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s"
# The library search path used internally by the compiler when linking
# a shared library.
-compiler_lib_search_path="-L/usr/lib64/mpi/gcc/openmpi/lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.5 -L/usr/lib64/gcc/x86_64-suse-linux/4.5/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.5/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.5/../../.."
+compiler_lib_search_path="-L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/fastfs/wir/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
# ### END LIBTOOL TAG CONFIG: CXX
diff --git a/AMDiS/src/ProblemVec.cc b/AMDiS/src/ProblemVec.cc
index 1d4f8866068ef64490f65a20daeb562a37b9d0f9..ac15d66350ee65285356597a330804d582fb3721 100644
--- a/AMDiS/src/ProblemVec.cc
+++ b/AMDiS/src/ProblemVec.cc
@@ -197,13 +197,14 @@ namespace AMDiS {
&globalRefinements);
#endif
- // Initialize the meshes if there is no serialization file.
- for (int i = 0; i < static_cast<int>(meshes.size()); i++) {
- bool initMesh = initFlag.isSet(INIT_MESH);
+ bool initMesh = initFlag.isSet(INIT_MESH) ||
+ (adoptProblem && adoptFlag.isSet(INIT_MESH));
+
+ // Initialize the meshes if there is no serialization file.
+ for (int i = 0; i < static_cast<int>(meshes.size()); i++)
if (initMesh && meshes[i] && !(meshes[i]->isInitialized()))
- meshes[i]->initialize();
- }
+ meshes[i]->initialize();
// === read value file and use it for the mesh values ===
std::string valueFilename("");
@@ -218,12 +219,9 @@ namespace AMDiS {
// === do global refinements ===
- for (unsigned int i = 0; i < meshes.size(); i++) {
- bool initMesh = initFlag.isSet(INIT_MESH);
-
+ for (unsigned int i = 0; i < meshes.size(); i++)
if (initMesh && meshes[i])
- refinementManager->globalRefine(meshes[i], globalRefinements);
- }
+ refinementManager->globalRefine(meshes[i], globalRefinements);
}
}