From 31bfafa2b81dd02efdab1a350443f05c3a572c77 Mon Sep 17 00:00:00 2001 From: Thomas Witkowski <thomas.witkowski@gmx.de> Date: Fri, 21 May 2010 08:48:51 +0000 Subject: [PATCH] First working Rosenbrock method implementation finished. --- AMDiS/CMakeLists.txt | 127 ++++++++--- AMDiS/Makefile.in | 1 + AMDiS/aclocal.m4 | 34 ++- AMDiS/bin/Makefile.am | 3 +- AMDiS/bin/Makefile.in | 19 +- AMDiS/configure | 208 +++++++++++++----- AMDiS/libtool | 85 +++---- AMDiS/src/AdaptInfo.h | 22 +- AMDiS/src/CreatorMap.cc | 40 +--- AMDiS/src/ResidualEstimator.h | 7 +- AMDiS/src/time/RosenbrockAdaptInstationary.cc | 45 +++- AMDiS/src/time/RosenbrockAdaptInstationary.h | 24 +- AMDiS/src/time/RosenbrockStationary.cc | 55 +---- AMDiS/src/time/RosenbrockStationary.h | 18 +- 14 files changed, 436 insertions(+), 252 deletions(-) diff --git a/AMDiS/CMakeLists.txt b/AMDiS/CMakeLists.txt index 774fec14..109edee7 100644 --- a/AMDiS/CMakeLists.txt +++ b/AMDiS/CMakeLists.txt @@ -38,37 +38,104 @@ endif(ENABLE_INTEL) SET(LIB_DIR ./lib) SET(SOURCE_DIR ./src) -SET(AMDIS_SRC ${SOURCE_DIR}/DOFIndexed.cc ${SOURCE_DIR}/GNUPlotWriter.cc ${SOURCE_DIR}/VertexVector.cc - ${SOURCE_DIR}/PeriodicBC.cc ${SOURCE_DIR}/Recovery.cc ${SOURCE_DIR}/RecoveryEstimator.cc - ${SOURCE_DIR}/ResidualEstimator.cc ${SOURCE_DIR}/Cholesky.cc ${SOURCE_DIR}/AdaptBase.cc - ${SOURCE_DIR}/StandardProblemIteration.cc ${SOURCE_DIR}/ProblemScal.cc ${SOURCE_DIR}/ProblemVec.cc - ${SOURCE_DIR}/ProblemVecDbg.cc ${SOURCE_DIR}/DualTraverse.cc ${SOURCE_DIR}/ElementData.cc - ${SOURCE_DIR}/ComponentTraverseInfo.cc ${SOURCE_DIR}/CreatorMap.cc ${SOURCE_DIR}/ProblemInterpolScal.cc - ${SOURCE_DIR}/ProblemInterpolVec.cc ${SOURCE_DIR}/MacroReader.cc ${SOURCE_DIR}/ValueReader.cc - ${SOURCE_DIR}/Projection.cc ${SOURCE_DIR}/SubAssembler.cc ${SOURCE_DIR}/ZeroOrderAssembler.cc - ${SOURCE_DIR}/FirstOrderAssembler.cc ${SOURCE_DIR}/SecondOrderAssembler.cc ${SOURCE_DIR}/Assembler.cc - ${SOURCE_DIR}/AdaptInfo.cc ${SOURCE_DIR}/Marker.cc ${SOURCE_DIR}/SurfaceQuadrature.cc - ${SOURCE_DIR}/LeafData.cc ${SOURCE_DIR}/BoundaryManager.cc ${SOURCE_DIR}/DirichletBC.cc - ${SOURCE_DIR}/RobinBC.cc ${SOURCE_DIR}/FileWriter.cc ${SOURCE_DIR}/ElementFileWriter.cc - ${SOURCE_DIR}/ElInfo.cc ${SOURCE_DIR}/ElInfoStack.cc ${SOURCE_DIR}/OperatorTerm.cc - ${SOURCE_DIR}/ZeroOrderTerm.cc ${SOURCE_DIR}/FirstOrderTerm.cc ${SOURCE_DIR}/SecondOrderTerm.cc - ${SOURCE_DIR}/Operator.cc ${SOURCE_DIR}/Mesh.cc ${SOURCE_DIR}/MeshStructure.cc - ${SOURCE_DIR}/AdaptStationary.cc ${SOURCE_DIR}/AdaptInstationary.cc - ${SOURCE_DIR}/DOFVector.cc ${SOURCE_DIR}/Estimator.cc ${SOURCE_DIR}/ProblemInstat.cc ${SOURCE_DIR}/ProblemNonLin.cc - ${SOURCE_DIR}/NonLinUpdater.cc ${SOURCE_DIR}/QPsiPhi.cc ${SOURCE_DIR}/BasisFunction.cc ${SOURCE_DIR}/Boundary.cc - ${SOURCE_DIR}/CoarseningManager.cc ${SOURCE_DIR}/CoarseningManager1d.cc ${SOURCE_DIR}/CoarseningManager2d.cc - ${SOURCE_DIR}/CoarseningManager3d.cc ${SOURCE_DIR}/DOFAdmin.cc ${SOURCE_DIR}/DOFMatrix.cc ${SOURCE_DIR}/Element.cc - ${SOURCE_DIR}/ElInfo1d.cc ${SOURCE_DIR}/ElInfo2d.cc ${SOURCE_DIR}/ElInfo3d.cc ${SOURCE_DIR}/FiniteElemSpace.cc - ${SOURCE_DIR}/FixVec.cc ${SOURCE_DIR}/Global.cc ${SOURCE_DIR}/Lagrange.cc ${SOURCE_DIR}/Line.cc - ${SOURCE_DIR}/MacroElement.cc ${SOURCE_DIR}/MacroWriter.cc ${SOURCE_DIR}/Parameters.cc ${SOURCE_DIR}/Parametric.cc - ${SOURCE_DIR}/Quadrature.cc ${SOURCE_DIR}/RCNeighbourList.cc ${SOURCE_DIR}/RefinementManager.cc - ${SOURCE_DIR}/RefinementManager1d.cc ${SOURCE_DIR}/RefinementManager2d.cc ${SOURCE_DIR}/RefinementManager3d.cc - ${SOURCE_DIR}/Tetrahedron.cc ${SOURCE_DIR}/Traverse.cc ${SOURCE_DIR}/TraverseParallel.cc ${SOURCE_DIR}/Triangle.cc - ${SOURCE_DIR}/TecPlotWriter.cc ${SOURCE_DIR}/ValueWriter.cc ${SOURCE_DIR}/VtkWriter.cc ${SOURCE_DIR}/PngWriter.cc - ${SOURCE_DIR}/PovrayWriter.cc ${SOURCE_DIR}/DataCollector.cc ${SOURCE_DIR}/ScalableQuadrature.cc - ${SOURCE_DIR}/SubElInfo.cc ${SOURCE_DIR}/parallel/InteriorBoundary.cc ${SOURCE_DIR}/ElementDofIterator.cc +SET(AMDIS_SRC ${SOURCE_DIR}/DOFIndexed.cc + ${SOURCE_DIR}/GNUPlotWriter.cc + ${SOURCE_DIR}/VertexVector.cc + ${SOURCE_DIR}/PeriodicBC.cc + ${SOURCE_DIR}/Recovery.cc + ${SOURCE_DIR}/RecoveryEstimator.cc + ${SOURCE_DIR}/ResidualEstimator.cc + ${SOURCE_DIR}/Cholesky.cc + ${SOURCE_DIR}/AdaptBase.cc + ${SOURCE_DIR}/StandardProblemIteration.cc + ${SOURCE_DIR}/ProblemScal.cc + ${SOURCE_DIR}/ProblemVec.cc + ${SOURCE_DIR}/ProblemVecDbg.cc + ${SOURCE_DIR}/DualTraverse.cc + ${SOURCE_DIR}/ElementData.cc + ${SOURCE_DIR}/ComponentTraverseInfo.cc + ${SOURCE_DIR}/CreatorMap.cc + ${SOURCE_DIR}/ProblemInterpolScal.cc + ${SOURCE_DIR}/ProblemInterpolVec.cc + ${SOURCE_DIR}/MacroReader.cc + ${SOURCE_DIR}/ValueReader.cc + ${SOURCE_DIR}/Projection.cc + ${SOURCE_DIR}/SubAssembler.cc + ${SOURCE_DIR}/ZeroOrderAssembler.cc + ${SOURCE_DIR}/FirstOrderAssembler.cc + ${SOURCE_DIR}/SecondOrderAssembler.cc + ${SOURCE_DIR}/Assembler.cc + ${SOURCE_DIR}/AdaptInfo.cc + ${SOURCE_DIR}/Marker.cc + ${SOURCE_DIR}/SurfaceQuadrature.cc + ${SOURCE_DIR}/LeafData.cc + ${SOURCE_DIR}/BoundaryManager.cc + ${SOURCE_DIR}/DirichletBC.cc + ${SOURCE_DIR}/RobinBC.cc + ${SOURCE_DIR}/FileWriter.cc + ${SOURCE_DIR}/ElementFileWriter.cc + ${SOURCE_DIR}/ElInfo.cc + ${SOURCE_DIR}/ElInfoStack.cc + ${SOURCE_DIR}/OperatorTerm.cc + ${SOURCE_DIR}/ZeroOrderTerm.cc + ${SOURCE_DIR}/FirstOrderTerm.cc + ${SOURCE_DIR}/SecondOrderTerm.cc + ${SOURCE_DIR}/Operator.cc + ${SOURCE_DIR}/Mesh.cc + ${SOURCE_DIR}/MeshStructure.cc + ${SOURCE_DIR}/AdaptStationary.cc + ${SOURCE_DIR}/AdaptInstationary.cc + ${SOURCE_DIR}/DOFVector.cc + ${SOURCE_DIR}/Estimator.cc + ${SOURCE_DIR}/ProblemInstat.cc + ${SOURCE_DIR}/ProblemNonLin.cc + ${SOURCE_DIR}/NonLinUpdater.cc + ${SOURCE_DIR}/QPsiPhi.cc + ${SOURCE_DIR}/BasisFunction.cc + ${SOURCE_DIR}/Boundary.cc + ${SOURCE_DIR}/CoarseningManager.cc + ${SOURCE_DIR}/CoarseningManager1d.cc + ${SOURCE_DIR}/CoarseningManager2d.cc + ${SOURCE_DIR}/CoarseningManager3d.cc + ${SOURCE_DIR}/DOFAdmin.cc + ${SOURCE_DIR}/DOFMatrix.cc + ${SOURCE_DIR}/Element.cc + ${SOURCE_DIR}/ElInfo1d.cc + ${SOURCE_DIR}/ElInfo2d.cc + ${SOURCE_DIR}/ElInfo3d.cc + ${SOURCE_DIR}/FiniteElemSpace.cc + ${SOURCE_DIR}/FixVec.cc + ${SOURCE_DIR}/Global.cc + ${SOURCE_DIR}/Lagrange.cc + ${SOURCE_DIR}/Line.cc + ${SOURCE_DIR}/MacroElement.cc + ${SOURCE_DIR}/MacroWriter.cc + ${SOURCE_DIR}/Parameters.cc + ${SOURCE_DIR}/Parametric.cc + ${SOURCE_DIR}/Quadrature.cc + ${SOURCE_DIR}/RCNeighbourList.cc + ${SOURCE_DIR}/RefinementManager.cc + ${SOURCE_DIR}/RefinementManager1d.cc + ${SOURCE_DIR}/RefinementManager2d.cc + ${SOURCE_DIR}/RefinementManager3d.cc + ${SOURCE_DIR}/Tetrahedron.cc + ${SOURCE_DIR}/Traverse.cc + ${SOURCE_DIR}/TraverseParallel.cc + ${SOURCE_DIR}/Triangle.cc + ${SOURCE_DIR}/TecPlotWriter.cc + ${SOURCE_DIR}/ValueWriter.cc + ${SOURCE_DIR}/VtkWriter.cc + ${SOURCE_DIR}/PngWriter.cc + ${SOURCE_DIR}/PovrayWriter.cc + ${SOURCE_DIR}/DataCollector.cc + ${SOURCE_DIR}/ScalableQuadrature.cc + ${SOURCE_DIR}/SubElInfo.cc + ${SOURCE_DIR}/parallel/InteriorBoundary.cc + ${SOURCE_DIR}/ElementDofIterator.cc ${SOURCE_DIR}/Debug.cc - ${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc ${SOURCE_DIR}/time/RosenbrockStationary.cc + ${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc + ${SOURCE_DIR}/time/RosenbrockStationary.cc + ${SOURCE_DIR}/time/RosenbrockMethod.cc ) if(ENABLE_PARMETIS) diff --git a/AMDiS/Makefile.in b/AMDiS/Makefile.in index e9c5bf1a..e7566807 100644 --- a/AMDiS/Makefile.in +++ b/AMDiS/Makefile.in @@ -140,6 +140,7 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PETSC_DIR = @PETSC_DIR@ RANLIB = @RANLIB@ +SED = @SED@ SET_MAKE = @SET_MAKE@ SHELL = @SHELL@ STRIP = @STRIP@ diff --git a/AMDiS/aclocal.m4 b/AMDiS/aclocal.m4 index c6b83dae..6cec4be8 100644 --- a/AMDiS/aclocal.m4 +++ b/AMDiS/aclocal.m4 @@ -1578,10 +1578,27 @@ linux*) # before this can be enabled. hardcode_into_libs=yes + # find out which ABI we are using + libsuff= + case "$host_cpu" in + x86_64*|s390x*|powerpc64*) + echo '[#]line __oline__ "configure"' > conftest.$ac_ext + if AC_TRY_EVAL(ac_compile); then + case `/usr/bin/file conftest.$ac_objext` in + *64-bit*) + libsuff=64 + sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}" + ;; + esac + fi + rm -rf conftest* + ;; + esac + # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then - lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` - sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" + lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` + sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on @@ -4288,6 +4305,9 @@ CC=$lt_[]_LT_AC_TAGVAR(compiler, $1) # Is the compiler the GNU C compiler? with_gcc=$_LT_AC_TAGVAR(GCC, $1) +gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` +gcc_ver=\`gcc -dumpversion\` + # An ERE matcher. EGREP=$lt_EGREP @@ -4421,11 +4441,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=$lt_[]_LT_AC_TAGVAR(predep_objects, $1) +predep_objects=\`echo $lt_[]_LT_AC_TAGVAR(predep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=$lt_[]_LT_AC_TAGVAR(postdep_objects, $1) +postdep_objects=\`echo $lt_[]_LT_AC_TAGVAR(postdep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place before the objects being linked to create a # shared library. @@ -4437,7 +4457,7 @@ postdeps=$lt_[]_LT_AC_TAGVAR(postdeps, $1) # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=$lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1) +compiler_lib_search_path=\`echo $lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -4517,7 +4537,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$_LT_AC_TAGVAR(link_all_deplibs, $1) # Compile-time system search path for libraries -sys_lib_search_path_spec=$lt_sys_lib_search_path_spec +sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -6353,6 +6373,7 @@ do done done done +IFS=$as_save_IFS lt_ac_max=0 lt_ac_count=0 # Add /usr/xpg4/bin/sed as it is typically found on Solaris @@ -6385,6 +6406,7 @@ for lt_ac_sed in $lt_ac_sed_list /usr/xpg4/bin/sed; do done ]) SED=$lt_cv_path_SED +AC_SUBST([SED]) AC_MSG_RESULT([$SED]) ]) diff --git a/AMDiS/bin/Makefile.am b/AMDiS/bin/Makefile.am index 04e2312c..6aec26c1 100644 --- a/AMDiS/bin/Makefile.am +++ b/AMDiS/bin/Makefile.am @@ -225,7 +225,8 @@ $(SOURCE_DIR)/ElementDofIteartor.h $(SOURCE_DIR)/ElementDofIterator.cc \ $(SOURCE_DIR)/parallel/InteriorBoundary.h $(SOURCE_DIR)/parallel/InteriorBoundary.cc \ $(SOURCE_DIR)/Debug.h $(SOURCE_DIR)/Debug.cc \ $(SOURCE_DIR)/time/RosenbrockAdaptInstationary.h $(SOURCE_DIR)/time/RosenbrockAdaptInstationary.cc \ -$(SOURCE_DIR)/time/RosenbrockStationary.h $(SOURCE_DIR)/time/RosenbrockStationary.cc +$(SOURCE_DIR)/time/RosenbrockStationary.h $(SOURCE_DIR)/time/RosenbrockStationary.cc \ +$(SOURCE_DIR)/time/RosenbrockMethod.h $(SOURCE_DIR)/time/RosenbrockMethod.cc COMPOSITE_SOURCE_DIR = ../compositeFEM/src diff --git a/AMDiS/bin/Makefile.in b/AMDiS/bin/Makefile.in index 0bfc59ce..b92541f4 100644 --- a/AMDiS/bin/Makefile.in +++ b/AMDiS/bin/Makefile.in @@ -243,7 +243,9 @@ am__libamdis_la_SOURCES_DIST = $(SOURCE_DIR)/parallel/StdMpi.h \ $(SOURCE_DIR)/time/RosenbrockAdaptInstationary.h \ $(SOURCE_DIR)/time/RosenbrockAdaptInstationary.cc \ $(SOURCE_DIR)/time/RosenbrockStationary.h \ - $(SOURCE_DIR)/time/RosenbrockStationary.cc + $(SOURCE_DIR)/time/RosenbrockStationary.cc \ + $(SOURCE_DIR)/time/RosenbrockMethod.h \ + $(SOURCE_DIR)/time/RosenbrockMethod.cc @USE_PARALLEL_DOMAIN_AMDIS_TRUE@am__objects_1 = libamdis_la-StdMpi.lo \ @USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-ParallelDomainBase.lo \ @USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-ParallelDomainDbg.lo \ @@ -312,7 +314,8 @@ am_libamdis_la_OBJECTS = $(am__objects_2) libamdis_la-DOFIndexed.lo \ libamdis_la-SubElInfo.lo libamdis_la-ElementDofIterator.lo \ libamdis_la-InteriorBoundary.lo libamdis_la-Debug.lo \ libamdis_la-RosenbrockAdaptInstationary.lo \ - libamdis_la-RosenbrockStationary.lo + libamdis_la-RosenbrockStationary.lo \ + libamdis_la-RosenbrockMethod.lo libamdis_la_OBJECTS = $(am_libamdis_la_OBJECTS) libcompositeFEM_la_LIBADD = am_libcompositeFEM_la_OBJECTS = libcompositeFEM_la-CFE_Integration.lo \ @@ -420,6 +423,7 @@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PETSC_DIR = @PETSC_DIR@ RANLIB = @RANLIB@ +SED = @SED@ SET_MAKE = @SET_MAKE@ SHELL = @SHELL@ STRIP = @STRIP@ @@ -657,7 +661,8 @@ $(SOURCE_DIR)/ElementDofIteartor.h $(SOURCE_DIR)/ElementDofIterator.cc \ $(SOURCE_DIR)/parallel/InteriorBoundary.h $(SOURCE_DIR)/parallel/InteriorBoundary.cc \ $(SOURCE_DIR)/Debug.h $(SOURCE_DIR)/Debug.cc \ $(SOURCE_DIR)/time/RosenbrockAdaptInstationary.h $(SOURCE_DIR)/time/RosenbrockAdaptInstationary.cc \ -$(SOURCE_DIR)/time/RosenbrockStationary.h $(SOURCE_DIR)/time/RosenbrockStationary.cc +$(SOURCE_DIR)/time/RosenbrockStationary.h $(SOURCE_DIR)/time/RosenbrockStationary.cc \ +$(SOURCE_DIR)/time/RosenbrockMethod.h $(SOURCE_DIR)/time/RosenbrockMethod.cc COMPOSITE_SOURCE_DIR = ../compositeFEM/src libcompositeFEM_la_CXXFLAGS = $(libamdis_la_CXXFLAGS) @@ -838,6 +843,7 @@ distclean-compile: @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-ResidualEstimator.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-RobinBC.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-RosenbrockAdaptInstationary.Plo@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-RosenbrockMethod.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-RosenbrockStationary.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-ScalableQuadrature.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-SecondOrderAssembler.Plo@am__quote@ @@ -1638,6 +1644,13 @@ libamdis_la-RosenbrockStationary.lo: $(SOURCE_DIR)/time/RosenbrockStationary.cc @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -c -o libamdis_la-RosenbrockStationary.lo `test -f '$(SOURCE_DIR)/time/RosenbrockStationary.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/time/RosenbrockStationary.cc +libamdis_la-RosenbrockMethod.lo: $(SOURCE_DIR)/time/RosenbrockMethod.cc +@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-RosenbrockMethod.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-RosenbrockMethod.Tpo" -c -o libamdis_la-RosenbrockMethod.lo `test -f '$(SOURCE_DIR)/time/RosenbrockMethod.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/time/RosenbrockMethod.cc; \ +@am__fastdepCXX_TRUE@ then mv -f "$(DEPDIR)/libamdis_la-RosenbrockMethod.Tpo" "$(DEPDIR)/libamdis_la-RosenbrockMethod.Plo"; else rm -f "$(DEPDIR)/libamdis_la-RosenbrockMethod.Tpo"; exit 1; fi +@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$(SOURCE_DIR)/time/RosenbrockMethod.cc' object='libamdis_la-RosenbrockMethod.lo' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@ +@am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -c -o libamdis_la-RosenbrockMethod.lo `test -f '$(SOURCE_DIR)/time/RosenbrockMethod.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/time/RosenbrockMethod.cc + libcompositeFEM_la-CFE_Integration.lo: $(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc @am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libcompositeFEM_la_CXXFLAGS) $(CXXFLAGS) -MT libcompositeFEM_la-CFE_Integration.lo -MD -MP -MF "$(DEPDIR)/libcompositeFEM_la-CFE_Integration.Tpo" -c -o libcompositeFEM_la-CFE_Integration.lo `test -f '$(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc' || echo '$(srcdir)/'`$(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc; \ @am__fastdepCXX_TRUE@ then mv -f "$(DEPDIR)/libcompositeFEM_la-CFE_Integration.Tpo" "$(DEPDIR)/libcompositeFEM_la-CFE_Integration.Plo"; else rm -f "$(DEPDIR)/libcompositeFEM_la-CFE_Integration.Tpo"; exit 1; fi diff --git a/AMDiS/configure b/AMDiS/configure index b4b86c5b..5d40cff8 100755 --- a/AMDiS/configure +++ b/AMDiS/configure @@ -462,7 +462,7 @@ ac_includes_default="\ # include <unistd.h> #endif" -ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CYGPATH_W PACKAGE VERSION ACLOCAL AUTOCONF AUTOMAKE AUTOHEADER MAKEINFO install_sh STRIP ac_ct_STRIP INSTALL_STRIP_PROGRAM mkdir_p AWK SET_MAKE am__leading_dot AMTAR am__tar am__untar MAINTAINER_MODE_TRUE MAINTAINER_MODE_FALSE MAINT AMDIS_DEBUG_TRUE AMDIS_DEBUG_FALSE CXX CC AMDIS_INTEL_TRUE AMDIS_INTEL_FALSE AMDIS_OPENMP_TRUE AMDIS_OPENMP_FALSE OPENMP_FLAG MPI_DIR PETSC_DIR USE_PARALLEL_AMDIS_TRUE USE_PARALLEL_AMDIS_FALSE USE_PARALLEL_DOMAIN_AMDIS_TRUE USE_PARALLEL_DOMAIN_AMDIS_FALSE ENABLE_UMFPACK_TRUE ENABLE_UMFPACK_FALSE ENABLE_MKL_TRUE ENABLE_MKL_FALSE DUNE_DIR ENABLE_DUNE_TRUE ENABLE_DUNE_FALSE ENABLE_BOOST_TRUE ENABLE_BOOST_FALSE CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT DEPDIR am__include am__quote AMDEP_TRUE AMDEP_FALSE AMDEPBACKSLASH CCDEPMODE am__fastdepCC_TRUE am__fastdepCC_FALSE CXXFLAGS ac_ct_CXX CXXDEPMODE am__fastdepCXX_TRUE am__fastdepCXX_FALSE build build_cpu build_vendor build_os host host_cpu host_vendor host_os EGREP LN_S ECHO AR ac_ct_AR RANLIB ac_ct_RANLIB CPP CXXCPP F77 FFLAGS ac_ct_F77 LIBTOOL LIBOBJS LTLIBOBJS' +ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CYGPATH_W PACKAGE VERSION ACLOCAL AUTOCONF AUTOMAKE AUTOHEADER MAKEINFO install_sh STRIP ac_ct_STRIP INSTALL_STRIP_PROGRAM mkdir_p AWK SET_MAKE am__leading_dot AMTAR am__tar am__untar MAINTAINER_MODE_TRUE MAINTAINER_MODE_FALSE MAINT AMDIS_DEBUG_TRUE AMDIS_DEBUG_FALSE CXX CC AMDIS_INTEL_TRUE AMDIS_INTEL_FALSE AMDIS_OPENMP_TRUE AMDIS_OPENMP_FALSE OPENMP_FLAG MPI_DIR PETSC_DIR USE_PARALLEL_AMDIS_TRUE USE_PARALLEL_AMDIS_FALSE USE_PARALLEL_DOMAIN_AMDIS_TRUE USE_PARALLEL_DOMAIN_AMDIS_FALSE ENABLE_UMFPACK_TRUE ENABLE_UMFPACK_FALSE ENABLE_MKL_TRUE ENABLE_MKL_FALSE DUNE_DIR ENABLE_DUNE_TRUE ENABLE_DUNE_FALSE ENABLE_BOOST_TRUE ENABLE_BOOST_FALSE CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT DEPDIR am__include am__quote AMDEP_TRUE AMDEP_FALSE AMDEPBACKSLASH CCDEPMODE am__fastdepCC_TRUE am__fastdepCC_FALSE CXXFLAGS ac_ct_CXX CXXDEPMODE am__fastdepCXX_TRUE am__fastdepCXX_FALSE build build_cpu build_vendor build_os host host_cpu host_vendor host_os SED EGREP LN_S ECHO AR ac_ct_AR RANLIB ac_ct_RANLIB CPP CXXCPP F77 FFLAGS ac_ct_F77 LIBTOOL LIBOBJS LTLIBOBJS' ac_subst_files='' # Initialize some variables set by options. @@ -3967,6 +3967,7 @@ do done done done +IFS=$as_save_IFS lt_ac_max=0 lt_ac_count=0 # Add /usr/xpg4/bin/sed as it is typically found on Solaris @@ -4001,6 +4002,7 @@ done fi SED=$lt_cv_path_SED + echo "$as_me:$LINENO: result: $SED" >&5 echo "${ECHO_T}$SED" >&6 @@ -4441,7 +4443,7 @@ ia64-*-hpux*) ;; *-*-irix6*) # Find out which ABI we are using. - echo '#line 4444 "configure"' > conftest.$ac_ext + echo '#line 4446 "configure"' > conftest.$ac_ext if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 (eval $ac_compile) 2>&5 ac_status=$? @@ -5576,7 +5578,7 @@ fi # Provide some information about the compiler. -echo "$as_me:5579:" \ +echo "$as_me:5581:" \ "checking for Fortran 77 compiler version" >&5 ac_compiler=`set X $ac_compile; echo $2` { (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5 @@ -6639,11 +6641,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:6642: $lt_compile\"" >&5) + (eval echo "\"\$as_me:6644: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:6646: \$? = $ac_status" >&5 + echo "$as_me:6648: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -6907,11 +6909,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:6910: $lt_compile\"" >&5) + (eval echo "\"\$as_me:6912: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:6914: \$? = $ac_status" >&5 + echo "$as_me:6916: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -7011,11 +7013,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:7014: $lt_compile\"" >&5) + (eval echo "\"\$as_me:7016: $lt_compile\"" >&5) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? cat out/conftest.err >&5 - echo "$as_me:7018: \$? = $ac_status" >&5 + echo "$as_me:7020: \$? = $ac_status" >&5 if (exit $ac_status) && test -s out/conftest2.$ac_objext then # The compiler can only warn and ignore the option if not recognized @@ -8476,10 +8478,31 @@ linux*) # before this can be enabled. hardcode_into_libs=yes + # find out which ABI we are using + libsuff= + case "$host_cpu" in + x86_64*|s390x*|powerpc64*) + echo '#line 8485 "configure"' > conftest.$ac_ext + if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 + (eval $ac_compile) 2>&5 + ac_status=$? + echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; then + case `/usr/bin/file conftest.$ac_objext` in + *64-bit*) + libsuff=64 + sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}" + ;; + esac + fi + rm -rf conftest* + ;; + esac + # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then - lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` - sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" + lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` + sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on @@ -9356,7 +9379,7 @@ else lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2 lt_status=$lt_dlunknown cat > conftest.$ac_ext <<EOF -#line 9359 "configure" +#line 9382 "configure" #include "confdefs.h" #if HAVE_DLFCN_H @@ -9456,7 +9479,7 @@ else lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2 lt_status=$lt_dlunknown cat > conftest.$ac_ext <<EOF -#line 9459 "configure" +#line 9482 "configure" #include "confdefs.h" #if HAVE_DLFCN_H @@ -9787,6 +9810,9 @@ CC=$lt_compiler # Is the compiler the GNU C compiler? with_gcc=$GCC +gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` +gcc_ver=\`gcc -dumpversion\` + # An ERE matcher. EGREP=$lt_EGREP @@ -9920,11 +9946,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=$lt_predep_objects +predep_objects=\`echo $lt_predep_objects | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=$lt_postdep_objects +postdep_objects=\`echo $lt_postdep_objects | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place before the objects being linked to create a # shared library. @@ -9936,7 +9962,7 @@ postdeps=$lt_postdeps # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=$lt_compiler_lib_search_path +compiler_lib_search_path=\`echo $lt_compiler_lib_search_path | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -10016,7 +10042,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$link_all_deplibs # Compile-time system search path for libraries -sys_lib_search_path_spec=$lt_sys_lib_search_path_spec +sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -11796,11 +11822,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:11799: $lt_compile\"" >&5) + (eval echo "\"\$as_me:11825: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:11803: \$? = $ac_status" >&5 + echo "$as_me:11829: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -11900,11 +11926,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:11903: $lt_compile\"" >&5) + (eval echo "\"\$as_me:11929: $lt_compile\"" >&5) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? cat out/conftest.err >&5 - echo "$as_me:11907: \$? = $ac_status" >&5 + echo "$as_me:11933: \$? = $ac_status" >&5 if (exit $ac_status) && test -s out/conftest2.$ac_objext then # The compiler can only warn and ignore the option if not recognized @@ -12432,10 +12458,31 @@ linux*) # before this can be enabled. hardcode_into_libs=yes + # find out which ABI we are using + libsuff= + case "$host_cpu" in + x86_64*|s390x*|powerpc64*) + echo '#line 12465 "configure"' > conftest.$ac_ext + if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 + (eval $ac_compile) 2>&5 + ac_status=$? + echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; then + case `/usr/bin/file conftest.$ac_objext` in + *64-bit*) + libsuff=64 + sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}" + ;; + esac + fi + rm -rf conftest* + ;; + esac + # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then - lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` - sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" + lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` + sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on @@ -12819,6 +12866,9 @@ CC=$lt_compiler_CXX # Is the compiler the GNU C compiler? with_gcc=$GCC_CXX +gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` +gcc_ver=\`gcc -dumpversion\` + # An ERE matcher. EGREP=$lt_EGREP @@ -12952,11 +13002,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=$lt_predep_objects_CXX +predep_objects=\`echo $lt_predep_objects_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=$lt_postdep_objects_CXX +postdep_objects=\`echo $lt_postdep_objects_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place before the objects being linked to create a # shared library. @@ -12968,7 +13018,7 @@ postdeps=$lt_postdeps_CXX # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=$lt_compiler_lib_search_path_CXX +compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -13048,7 +13098,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$link_all_deplibs_CXX # Compile-time system search path for libraries -sys_lib_search_path_spec=$lt_sys_lib_search_path_spec +sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -13470,11 +13520,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:13473: $lt_compile\"" >&5) + (eval echo "\"\$as_me:13523: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:13477: \$? = $ac_status" >&5 + echo "$as_me:13527: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -13574,11 +13624,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:13577: $lt_compile\"" >&5) + (eval echo "\"\$as_me:13627: $lt_compile\"" >&5) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? cat out/conftest.err >&5 - echo "$as_me:13581: \$? = $ac_status" >&5 + echo "$as_me:13631: \$? = $ac_status" >&5 if (exit $ac_status) && test -s out/conftest2.$ac_objext then # The compiler can only warn and ignore the option if not recognized @@ -15019,10 +15069,31 @@ linux*) # before this can be enabled. hardcode_into_libs=yes + # find out which ABI we are using + libsuff= + case "$host_cpu" in + x86_64*|s390x*|powerpc64*) + echo '#line 15076 "configure"' > conftest.$ac_ext + if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 + (eval $ac_compile) 2>&5 + ac_status=$? + echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; then + case `/usr/bin/file conftest.$ac_objext` in + *64-bit*) + libsuff=64 + sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}" + ;; + esac + fi + rm -rf conftest* + ;; + esac + # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then - lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` - sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" + lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` + sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on @@ -15406,6 +15477,9 @@ CC=$lt_compiler_F77 # Is the compiler the GNU C compiler? with_gcc=$GCC_F77 +gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` +gcc_ver=\`gcc -dumpversion\` + # An ERE matcher. EGREP=$lt_EGREP @@ -15539,11 +15613,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=$lt_predep_objects_F77 +predep_objects=\`echo $lt_predep_objects_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=$lt_postdep_objects_F77 +postdep_objects=\`echo $lt_postdep_objects_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place before the objects being linked to create a # shared library. @@ -15555,7 +15629,7 @@ postdeps=$lt_postdeps_F77 # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=$lt_compiler_lib_search_path_F77 +compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -15635,7 +15709,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$link_all_deplibs_F77 # Compile-time system search path for libraries -sys_lib_search_path_spec=$lt_sys_lib_search_path_spec +sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -15777,11 +15851,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:15780: $lt_compile\"" >&5) + (eval echo "\"\$as_me:15854: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:15784: \$? = $ac_status" >&5 + echo "$as_me:15858: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -16045,11 +16119,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:16048: $lt_compile\"" >&5) + (eval echo "\"\$as_me:16122: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:16052: \$? = $ac_status" >&5 + echo "$as_me:16126: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -16149,11 +16223,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:16152: $lt_compile\"" >&5) + (eval echo "\"\$as_me:16226: $lt_compile\"" >&5) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? cat out/conftest.err >&5 - echo "$as_me:16156: \$? = $ac_status" >&5 + echo "$as_me:16230: \$? = $ac_status" >&5 if (exit $ac_status) && test -s out/conftest2.$ac_objext then # The compiler can only warn and ignore the option if not recognized @@ -17614,10 +17688,31 @@ linux*) # before this can be enabled. hardcode_into_libs=yes + # find out which ABI we are using + libsuff= + case "$host_cpu" in + x86_64*|s390x*|powerpc64*) + echo '#line 17695 "configure"' > conftest.$ac_ext + if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5 + (eval $ac_compile) 2>&5 + ac_status=$? + echo "$as_me:$LINENO: \$? = $ac_status" >&5 + (exit $ac_status); }; then + case `/usr/bin/file conftest.$ac_objext` in + *64-bit*) + libsuff=64 + sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}" + ;; + esac + fi + rm -rf conftest* + ;; + esac + # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then - lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` - sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" + lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` + sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on @@ -18001,6 +18096,9 @@ CC=$lt_compiler_GCJ # Is the compiler the GNU C compiler? with_gcc=$GCC_GCJ +gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` +gcc_ver=\`gcc -dumpversion\` + # An ERE matcher. EGREP=$lt_EGREP @@ -18134,11 +18232,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=$lt_predep_objects_GCJ +predep_objects=\`echo $lt_predep_objects_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=$lt_postdep_objects_GCJ +postdep_objects=\`echo $lt_postdep_objects_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place before the objects being linked to create a # shared library. @@ -18150,7 +18248,7 @@ postdeps=$lt_postdeps_GCJ # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=$lt_compiler_lib_search_path_GCJ +compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -18230,7 +18328,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$link_all_deplibs_GCJ # Compile-time system search path for libraries -sys_lib_search_path_spec=$lt_sys_lib_search_path_spec +sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -18482,6 +18580,9 @@ CC=$lt_compiler_RC # Is the compiler the GNU C compiler? with_gcc=$GCC_RC +gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\` +gcc_ver=\`gcc -dumpversion\` + # An ERE matcher. EGREP=$lt_EGREP @@ -18615,11 +18716,11 @@ striplib=$lt_striplib # Dependencies to place before the objects being linked to create a # shared library. -predep_objects=$lt_predep_objects_RC +predep_objects=\`echo $lt_predep_objects_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects=$lt_postdep_objects_RC +postdep_objects=\`echo $lt_postdep_objects_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Dependencies to place before the objects being linked to create a # shared library. @@ -18631,7 +18732,7 @@ postdeps=$lt_postdeps_RC # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path=$lt_compiler_lib_search_path_RC +compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Method to check whether dependent libraries are shared objects. deplibs_check_method=$lt_deplibs_check_method @@ -18711,7 +18812,7 @@ variables_saved_for_relink="$variables_saved_for_relink" link_all_deplibs=$link_all_deplibs_RC # Compile-time system search path for libraries -sys_lib_search_path_spec=$lt_sys_lib_search_path_spec +sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\` # Run-time system search path for libraries sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec @@ -19635,6 +19736,7 @@ s,@host@,$host,;t t s,@host_cpu@,$host_cpu,;t t s,@host_vendor@,$host_vendor,;t t s,@host_os@,$host_os,;t t +s,@SED@,$SED,;t t s,@EGREP@,$EGREP,;t t s,@LN_S@,$LN_S,;t t s,@ECHO@,$ECHO,;t t diff --git a/AMDiS/libtool b/AMDiS/libtool index e22d47bd..2f043c9f 100755 --- a/AMDiS/libtool +++ b/AMDiS/libtool @@ -30,10 +30,10 @@ # the same distribution terms that you use for the rest of that program. # A sed program that does not truncate output. -SED="/usr/bin/sed" +SED="/bin/sed" # Sed that helps us avoid accidentally triggering echo(1) options like -n. -Xsed="/usr/bin/sed -e 1s/^X//" +Xsed="/bin/sed -e 1s/^X//" # The HP-UX ksh and POSIX shell print the target directory to stdout # if CDPATH is set. @@ -44,7 +44,7 @@ available_tags=" CXX F77" # ### BEGIN LIBTOOL CONFIG -# Libtool was configured on host p2q081: +# Libtool was configured on host NWRW15: # Shell to use when invoking shell scripts. SHELL="/bin/sh" @@ -66,12 +66,12 @@ fast_install=yes # The host system. host_alias= -host=x86_64-unknown-linux-gnu +host=i686-pc-linux-gnu host_os=linux-gnu # The build system. build_alias= -build=x86_64-unknown-linux-gnu +build=i686-pc-linux-gnu build_os=linux-gnu # An echo program that does not interpret backslashes. @@ -82,22 +82,25 @@ AR="ar" AR_FLAGS="cru" # A C compiler. -LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" +LTCC="gcc" # LTCC compiler flags. LTCFLAGS="-g -O2" # A language-specific compiler. -CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" +CC="gcc" # Is the compiler the GNU C compiler? with_gcc=yes +gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'` +gcc_ver=`gcc -dumpversion` + # An ERE matcher. EGREP="grep -E" # The linker used to build libraries. -LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64" +LD="/usr/bin/ld" # Whether we need hard or soft links. LN_S="ln -s" @@ -171,7 +174,7 @@ dlopen_self=unknown dlopen_self_static=unknown # Compiler flag to prevent dynamic linking. -link_static_flag="" +link_static_flag="-static" # Compiler flag to turn off builtin functions. no_builtin_flag=" -fno-builtin" @@ -229,11 +232,11 @@ striplib="strip --strip-unneeded" # Dependencies to place before the objects being linked to create a # shared library. -predep_objects="" +predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects="" +postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Dependencies to place before the objects being linked to create a # shared library. @@ -245,7 +248,7 @@ postdeps="" # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path="" +compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Method to check whether dependent libraries are shared objects. deplibs_check_method="pass_all" @@ -325,10 +328,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM link_all_deplibs=unknown # Compile-time system search path for libraries -sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/4.1.2/ /fastfs/wir/local/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /fastfs/wir/local/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/" +sys_lib_search_path_spec=`echo " /u/witkowski/local/lib/i386-redhat-linux/4.1.2/ /u/witkowski/local/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Run-time system search path for libraries -sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso " +sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib " # Fix the shell variable $srcfile for the compiler. fix_srcfile_path="" @@ -6760,7 +6763,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac` # End: # ### BEGIN LIBTOOL TAG CONFIG: CXX -# Libtool was configured on host p2q081: +# Libtool was configured on host NWRW15: # Shell to use when invoking shell scripts. SHELL="/bin/sh" @@ -6782,12 +6785,12 @@ fast_install=yes # The host system. host_alias= -host=x86_64-unknown-linux-gnu +host=i686-pc-linux-gnu host_os=linux-gnu # The build system. build_alias= -build=x86_64-unknown-linux-gnu +build=i686-pc-linux-gnu build_os=linux-gnu # An echo program that does not interpret backslashes. @@ -6798,22 +6801,25 @@ AR="ar" AR_FLAGS="cru" # A C compiler. -LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" +LTCC="gcc" # LTCC compiler flags. LTCFLAGS="-g -O2" # A language-specific compiler. -CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpiCC" +CC="g++" # Is the compiler the GNU C compiler? with_gcc=yes +gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'` +gcc_ver=`gcc -dumpversion` + # An ERE matcher. EGREP="grep -E" # The linker used to build libraries. -LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64" +LD="/usr/bin/ld" # Whether we need hard or soft links. LN_S="ln -s" @@ -6887,7 +6893,7 @@ dlopen_self=unknown dlopen_self_static=unknown # Compiler flag to prevent dynamic linking. -link_static_flag="" +link_static_flag="-static" # Compiler flag to turn off builtin functions. no_builtin_flag=" -fno-builtin" @@ -6942,11 +6948,11 @@ striplib="strip --strip-unneeded" # Dependencies to place before the objects being linked to create a # shared library. -predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o" +predep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbeginS.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o" +postdep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/crtendS.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Dependencies to place before the objects being linked to create a # shared library. @@ -6954,11 +6960,11 @@ predeps="" # Dependencies to place after the objects being linked to create a # shared library. -postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s" +postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s" # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/fastfs/wir/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.." +compiler_lib_search_path=`echo "-L/u/witkowski/local/lib -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.." | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Method to check whether dependent libraries are shared objects. deplibs_check_method="pass_all" @@ -7038,10 +7044,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM link_all_deplibs=unknown # Compile-time system search path for libraries -sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/4.1.2/ /fastfs/wir/local/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /fastfs/wir/local/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/" +sys_lib_search_path_spec=`echo " /u/witkowski/local/lib/i386-redhat-linux/4.1.2/ /u/witkowski/local/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Run-time system search path for libraries -sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso " +sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib " # Fix the shell variable $srcfile for the compiler. fix_srcfile_path="" @@ -7065,7 +7071,7 @@ include_expsyms="" # ### BEGIN LIBTOOL TAG CONFIG: F77 -# Libtool was configured on host p2q081: +# Libtool was configured on host NWRW15: # Shell to use when invoking shell scripts. SHELL="/bin/sh" @@ -7087,12 +7093,12 @@ fast_install=yes # The host system. host_alias= -host=x86_64-unknown-linux-gnu +host=i686-pc-linux-gnu host_os=linux-gnu # The build system. build_alias= -build=x86_64-unknown-linux-gnu +build=i686-pc-linux-gnu build_os=linux-gnu # An echo program that does not interpret backslashes. @@ -7103,7 +7109,7 @@ AR="ar" AR_FLAGS="cru" # A C compiler. -LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" +LTCC="gcc" # LTCC compiler flags. LTCFLAGS="-g -O2" @@ -7112,13 +7118,16 @@ LTCFLAGS="-g -O2" CC="g77" # Is the compiler the GNU C compiler? -with_gcc= +with_gcc=yes + +gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'` +gcc_ver=`gcc -dumpversion` # An ERE matcher. EGREP="grep -E" # The linker used to build libraries. -LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64" +LD="/usr/bin/ld" # Whether we need hard or soft links. LN_S="ln -s" @@ -7250,11 +7259,11 @@ striplib="strip --strip-unneeded" # Dependencies to place before the objects being linked to create a # shared library. -predep_objects="" +predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Dependencies to place after the objects being linked to create a # shared library. -postdep_objects="" +postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Dependencies to place before the objects being linked to create a # shared library. @@ -7266,7 +7275,7 @@ postdeps="" # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path="" +compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Method to check whether dependent libraries are shared objects. deplibs_check_method="pass_all" @@ -7346,10 +7355,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM link_all_deplibs=unknown # Compile-time system search path for libraries -sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/3.3.5/ /fastfs/wir/local/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/" +sys_lib_search_path_spec=`echo " /u/witkowski/local/lib/i386-redhat-linux/3.4.6/ /u/witkowski/local/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../ /lib/i386-redhat-linux/3.4.6/ /lib/ /usr/lib/i386-redhat-linux/3.4.6/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"` # Run-time system search path for libraries -sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso " +sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib " # Fix the shell variable $srcfile for the compiler. fix_srcfile_path="" diff --git a/AMDiS/src/AdaptInfo.h b/AMDiS/src/AdaptInfo.h index 2ff0d4ec..d493bc1a 100644 --- a/AMDiS/src/AdaptInfo.h +++ b/AMDiS/src/AdaptInfo.h @@ -52,25 +52,21 @@ namespace AMDiS { est_t_max(0.0), fac_max(0.0), fac_sum(1.0), - spaceTolerance(1.0), - timeTolerance(1.0), - timeErrLow(1.0), + spaceTolerance(0.0), + timeTolerance(0.0), + timeErrLow(0.0), coarsenAllowed(0), refinementAllowed(1), refineBisections(1), coarseBisections(1) { - double totalTol = 1.0; - double relSpaceErr = 1.0; - double relTimeErr = 0.5; - double timeTheta1 = 1.0; double timeTheta2 = 0.3; - GET_PARAMETER(0, prefix + "->tolerance", "%f", &totalTol); - GET_PARAMETER(0, prefix + "->rel space error", "%f", &relSpaceErr); - GET_PARAMETER(0, prefix + "->rel time error", "%f", &relTimeErr); - GET_PARAMETER(0, prefix + "->time theta 1", "%f", &timeTheta1); + // TODO: obsolete parameters timeTheta2, relTimeErr, relSpaceErr + + GET_PARAMETER(0, prefix + "->tolerance", "%f", &spaceTolerance); + GET_PARAMETER(0, prefix + "->time tolerance", "%f", &timeTolerance); GET_PARAMETER(0, prefix + "->time theta 2", "%f", &timeTheta2); GET_PARAMETER(0, prefix + "->coarsen allowed", "%d", &coarsenAllowed); GET_PARAMETER(0, prefix + "->refinement allowed", "%d", &refinementAllowed); @@ -79,9 +75,7 @@ namespace AMDiS { GET_PARAMETER(0, prefix + "->sum factor", "%f", &fac_sum); GET_PARAMETER(0, prefix + "->max factor", "%f", &fac_max); - spaceTolerance = totalTol * relSpaceErr; - timeTolerance = totalTol * relTimeErr * timeTheta1; - timeErrLow = totalTol * relTimeErr * timeTheta2; + timeErrLow = timeTolerance * timeTheta2; } /// Sum of all error estimates diff --git a/AMDiS/src/CreatorMap.cc b/AMDiS/src/CreatorMap.cc index 338350c9..fbe1bdbd 100644 --- a/AMDiS/src/CreatorMap.cc +++ b/AMDiS/src/CreatorMap.cc @@ -14,6 +14,7 @@ #include "PartitionElementData.h" #include "DOFMatrix.h" #include "UmfPackSolver.h" +#include "time/RosenbrockMethod.h" namespace AMDiS { @@ -61,6 +62,7 @@ namespace AMDiS { #endif } + template<> void CreatorMap<ITL_BasePreconditioner>::addDefaultCreators() { @@ -79,34 +81,6 @@ namespace AMDiS { addCreator("no", creator); } -#if 0 - template<> - void CreatorMap<NonLinSolver<DOFVector<double> > >::addDefaultCreators() - { - NonLinSolverCreator<DOFVector<double> > *creator; - - creator = new Newton<DOFVector<double> >::Creator; - addCreator("newton", creator); - - creator = new NewtonS<DOFVector<double> >::Creator; - addCreator("newton_fs", creator); - } -#endif - - -#if 0 - template<> - void CreatorMap<NonLinSolver<SystemVector> >::addDefaultCreators() - { - NonLinSolverCreator<SystemVector> *creator; - - creator = new Newton<SystemVector>::Creator; - addCreator("newton", creator); - - creator = new NewtonS<SystemVector>::Creator; - addCreator("newton_fs", creator); - } -#endif template<> void CreatorMap<Estimator>::addDefaultCreators() @@ -120,6 +94,7 @@ namespace AMDiS { addCreator("recovery", creator); } + template<> void CreatorMap<ElementData>::addDefaultCreators() { @@ -150,4 +125,13 @@ namespace AMDiS { addCreator("PartitionElementData", creator); } + + template<> + void CreatorMap<RosenbrockMethod>::addDefaultCreators() + { + addCreator("ros2", new Ros2::Creator); + addCreator("rowda3", new Rowda3::Creator); + addCreator("ros3p", new Ros3p::Creator); + addCreator("rodasp", new Rodasp::Creator); + } } diff --git a/AMDiS/src/ResidualEstimator.h b/AMDiS/src/ResidualEstimator.h index 79c31126..fce3c1c1 100644 --- a/AMDiS/src/ResidualEstimator.h +++ b/AMDiS/src/ResidualEstimator.h @@ -67,9 +67,12 @@ namespace AMDiS { class Creator : public EstimatorCreator { public: - Creator() : EstimatorCreator() {} + Creator() + : EstimatorCreator() + {} - virtual ~Creator() {} + virtual ~Creator() + {} /// Returns a new ODirSolver object. Estimator* create() diff --git a/AMDiS/src/time/RosenbrockAdaptInstationary.cc b/AMDiS/src/time/RosenbrockAdaptInstationary.cc index 23277375..ccf07696 100644 --- a/AMDiS/src/time/RosenbrockAdaptInstationary.cc +++ b/AMDiS/src/time/RosenbrockAdaptInstationary.cc @@ -4,6 +4,29 @@ namespace AMDiS { + RosenbrockAdaptInstationary::RosenbrockAdaptInstationary(std::string name, + RosenbrockStationary *problemStat, + AdaptInfo *info, + ProblemTimeInterface *problemInstat, + AdaptInfo *initialInfo, + time_t initialTimestamp) + : AdaptInstationary(name, problemStat, info, problemInstat, initialInfo, initialTimestamp), + rosenbrockStat(problemStat), + firstTimestep(true), + lastTimestepRejected(false), + succRejection(false), + tauGamma(1.0) + { + std::string str; + GET_PARAMETER(0, name + "->rosenbrock method", &str); + RosenbrockMethodCreator *creator = + dynamic_cast<RosenbrockMethodCreator*>(CreatorMap<RosenbrockMethod>::getCreator(str)); + rosenbrockMethod = creator->create(); + + problemStat->setRosenbrockMethod(rosenbrockMethod); + } + + void RosenbrockAdaptInstationary::oneTimestep() { FUNCNAME("RosenbrockAdaptInstationary::oneTimestep()"); @@ -13,11 +36,13 @@ namespace AMDiS { problemIteration->oneIteration(adaptInfo, ESTIMATE); bool rejected = false; - + double timeTol = adaptInfo->getTimeTolerance(0); + do { // increment time adaptInfo->setTime(adaptInfo->getTime() + adaptInfo->getTimestep()); problemTime->setTime(adaptInfo); + tauGamma = 1.0 / (adaptInfo->getTimestep() * rosenbrockMethod->getGamma()); INFO(info, 6)("time = %e timestep = %e\n", adaptInfo->getTime(), adaptInfo->getTimestep()); @@ -31,15 +56,16 @@ namespace AMDiS { double errorEst = adaptInfo->getTimeEstSum(0); double newTimestep = 0.0; + double order = rosenbrockMethod->getOrder(); if (errorEst < timeTol) { double fac = 1.0; if (firstTimestep || succRejection) { - fac = pow((timeTol / errorEst), 1.0 / 3.0); + fac = pow((timeTol / errorEst), 1.0 / order); } else { fac = adaptInfo->getTimestep() / tauAcc * - pow((timeTol * estAcc / (errorEst * errorEst)), 1.0 / 3.0); + pow((timeTol * estAcc / (errorEst * errorEst)), 1.0 / order); } fac = std::min(fac, 3.0); newTimestep = fac * adaptInfo->getTimestep(); @@ -50,18 +76,17 @@ namespace AMDiS { lastTimestepRejected = false; succRejection = false; } else { - double p = 3.0; - if (lastTimestepRejected) { succRejection = true; - double reducedP = log(errorEst / estRej) / log(adaptInfo->getTimestep() / tauRej); + double reducedP = + log(errorEst / estRej) / log(adaptInfo->getTimestep() / tauRej); - if (reducedP < p && reducedP > 0.0) - p = reducedP; + if (reducedP < order && reducedP > 0.0) + order = reducedP; } - newTimestep = pow((timeTol / errorEst), 1.0 / p) * adaptInfo->getTimestep(); + newTimestep = pow((timeTol / errorEst), 1.0 / order) * adaptInfo->getTimestep(); tauRej = adaptInfo->getTimestep(); estRej = errorEst; @@ -83,7 +108,7 @@ namespace AMDiS { rejected = false; - for (int i = 0; i < 3; i++) + for (int i = 0; i < adaptInfo->getSize(); i++) INFO(info, 6)("time estimator for component %d = %f\n", i, adaptInfo->getTimeEstSum(i)); } else { diff --git a/AMDiS/src/time/RosenbrockAdaptInstationary.h b/AMDiS/src/time/RosenbrockAdaptInstationary.h index c2a1e811..dc7548ac 100644 --- a/AMDiS/src/time/RosenbrockAdaptInstationary.h +++ b/AMDiS/src/time/RosenbrockAdaptInstationary.h @@ -24,7 +24,9 @@ #include "AMDiS_fwd.h" #include "time/RosenbrockStationary.h" +#include "time/RosenbrockMethod.h" #include "AdaptInstationary.h" +#include "CreatorMap.h" namespace AMDiS { @@ -36,29 +38,25 @@ namespace AMDiS { AdaptInfo *info, ProblemTimeInterface *problemInstat, AdaptInfo *initialInfo, - time_t initialTimestamp = 0) - : AdaptInstationary(name, problemStat, info, problemInstat, initialInfo, initialTimestamp), - rosenbrockStat(problemStat), - firstTimestep(true), - lastTimestepRejected(false), - succRejection(false) - { - timeTol = 0.0; - GET_PARAMETER(1, "pfc->time tol", "%f", &timeTol); - } - + time_t initialTimestamp = 0); void oneTimestep(); + double* getTauGamma() + { + return &tauGamma; + } + protected: + RosenbrockMethod *rosenbrockMethod; RosenbrockStationary *rosenbrockStat; - double timeTol; - bool firstTimestep, lastTimestepRejected, succRejection; double tauAcc, estAcc, tauRej, estRej; + + double tauGamma; }; } diff --git a/AMDiS/src/time/RosenbrockStationary.cc b/AMDiS/src/time/RosenbrockStationary.cc index a8200b4f..40b42e1e 100644 --- a/AMDiS/src/time/RosenbrockStationary.cc +++ b/AMDiS/src/time/RosenbrockStationary.cc @@ -11,59 +11,20 @@ namespace AMDiS { *unVec = *newUn; } - void RosenbrockStationary::initRB() + void RosenbrockStationary::init() { - stages = 3; - stageSolution = new SystemVector(*solution); unVec = new SystemVector(*solution); newUn = new SystemVector(*solution); tmp = new SystemVector(*solution); lowSol = new SystemVector(*solution); - stageSolutions.resize(stages); - for (int i = 0; i < stages; i++) + stageSolutions.resize(rm->getStages()); + for (int i = 0; i < rm->getStages(); i++) stageSolutions[i] = new SystemVector(*solution); phiSum = new DOFVector<double>(feSpaces[0], "phiSum"); tmpDof = new DOFVector<double>(feSpaces[0], "phiSum"); - - a.resize(stages); - for (int i = 0; i < stages; i++) { - a[i].resize(stages); - for (int j = 0; j < stages; j++) - a[i][j] = 0.0; - } - a[0][0] = 0.0; - a[1][0] = 1.605996252195329e+00; - a[1][1] = 0.0; - a[2][0] = 1.605996252195329e+00; - a[2][1] = 0.0; - a[2][2] = 0.0; - - c.resize(stages); - for (int i = 0; i < stages; i++) { - c[i].resize(stages); - for (int j = 0; j < stages; j++) - c[i][j] = 0.0; - } - - c[0][0] = 2.294280360279042e+00; - c[1][0] = -8.874044410657833e-01; - c[1][1] = 2.294280360279042e+00; - c[2][0] = -2.398747971635036e+01; - c[2][1] = -5.263722371562129e+00; - c[2][2] = 2.294280360279042e+00; - - m.resize(stages); - m[0] = 2.236727045296590e+00; - m[1] = 2.250067730969644e+00; - m[2] = -2.092514044390320e-01; - - m2.resize(stages); - m2[0] = 2.059356167645940e+00; - m2[1] = 1.694014319346528e-01; - m2[2] = 0.0; } @@ -78,18 +39,18 @@ namespace AMDiS { *newUn = *unVec; *lowSol = *unVec; - for (int i = 0; i < stages; i++) { + for (int i = 0; i < rm->getStages(); i++) { *stageSolution = *unVec; for (int j = 0; j < i; j++) { *tmp = *(stageSolutions[j]); - *tmp *= a[i][j]; + *tmp *= rm->getA(i, j); *stageSolution += *tmp; } phiSum->set(0.0); for (int j = 0; j < i; j++) { *tmpDof = *(stageSolutions[j]->getDOFVector(0)); - *tmpDof *= (c[i][j] / *tauPtr); + *tmpDof *= (rm->getC(i, j) / *tauPtr); *phiSum += *tmpDof; } @@ -100,11 +61,11 @@ namespace AMDiS { *(stageSolutions[i]) = *solution; *tmp = *solution; - *tmp *= m[i]; + *tmp *= rm->getM1(i); *newUn += *tmp; *tmp = *solution; - *tmp *= m2[i]; + *tmp *= rm->getM2(i); *lowSol += *tmp; } diff --git a/AMDiS/src/time/RosenbrockStationary.h b/AMDiS/src/time/RosenbrockStationary.h index 4ff99f72..4a69d968 100644 --- a/AMDiS/src/time/RosenbrockStationary.h +++ b/AMDiS/src/time/RosenbrockStationary.h @@ -25,6 +25,7 @@ #include "AMDiS_fwd.h" #include "ProblemVec.h" #include "SystemVector.h" +#include "time/RosenbrockMethod.h" namespace AMDiS { @@ -36,8 +37,6 @@ namespace AMDiS { first(true) {} - void initRB(); - DOFVector<double>* getStageSolution(int i) { return stageSolution->getDOFVector(i); @@ -65,8 +64,17 @@ namespace AMDiS { void solve(AdaptInfo *adaptInfo, bool fixedMatrix); + void setRosenbrockMethod(RosenbrockMethod *method) + { + rm = method; + init(); + } + protected: - int stages; + void init(); + + protected: + RosenbrockMethod *rm; SystemVector *stageSolution, *unVec, *newUn, *tmp, *lowSol; @@ -74,10 +82,6 @@ namespace AMDiS { DOFVector<double> *phiSum, *tmpDof; - std::vector<std::vector<double> > a, c; - - std::vector<double> m, m2; - double *tauPtr; bool first; -- GitLab