diff --git a/AMDiS/libtool b/AMDiS/libtool
index d350b76212bed8dee0b690fd4657aa29e735099b..aebb7ef32dabdba9e987aee6f1b817221b4566d8 100755
--- a/AMDiS/libtool
+++ b/AMDiS/libtool
@@ -44,7 +44,7 @@ available_tags=" CXX F77"
# ### BEGIN LIBTOOL CONFIG
-# Libtool was configured on host p1d066:
+# Libtool was configured on host p2q065:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
@@ -93,6 +93,9 @@ CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# Is the compiler the GNU C compiler?
with_gcc=yes
+gcc_dir=`gcc -print-file-name=. | /usr/bin/sed 's,/\.$,,'`
+gcc_ver=`gcc -dumpversion`
+
# An ERE matcher.
EGREP="grep -E"
@@ -229,11 +232,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
-predep_objects=""
+predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place after the objects being linked to create a
# shared library.
-postdep_objects=""
+postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place before the objects being linked to create a
# shared library.
@@ -245,7 +248,7 @@ postdeps=""
# The library search path used internally by the compiler when linking
# a shared library.
-compiler_lib_search_path=""
+compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
@@ -325,10 +328,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
-sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/4.1.2/ /fastfs/wir/local/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /fastfs/wir/local/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
+sys_lib_search_path_spec=`echo "/lib64 /usr/lib64 /usr/local/lib64" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
+sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
@@ -6760,7 +6763,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
# End:
# ### BEGIN LIBTOOL TAG CONFIG: CXX
-# Libtool was configured on host p1d066:
+# Libtool was configured on host p2q065:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
@@ -6809,6 +6812,9 @@ CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpiCC"
# Is the compiler the GNU C compiler?
with_gcc=yes
+gcc_dir=`gcc -print-file-name=. | /usr/bin/sed 's,/\.$,,'`
+gcc_ver=`gcc -dumpversion`
+
# An ERE matcher.
EGREP="grep -E"
@@ -6942,11 +6948,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
-predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o"
+predep_objects=`echo "/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place after the objects being linked to create a
# shared library.
-postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o"
+postdep_objects=`echo "/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place before the objects being linked to create a
# shared library.
@@ -6958,7 +6964,7 @@ postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl
# The library search path used internally by the compiler when linking
# a shared library.
-compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/fastfs/wir/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
+compiler_lib_search_path=`echo "-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/fastfs/wir/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.." | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
@@ -7038,10 +7044,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
-sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/4.1.2/ /fastfs/wir/local/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /fastfs/wir/local/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
+sys_lib_search_path_spec=`echo "/lib64 /usr/lib64 /usr/local/lib64" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
+sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
@@ -7065,7 +7071,7 @@ include_expsyms=""
# ### BEGIN LIBTOOL TAG CONFIG: F77
-# Libtool was configured on host p1d066:
+# Libtool was configured on host p2q065:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
@@ -7114,6 +7120,9 @@ CC="g77"
# Is the compiler the GNU C compiler?
with_gcc=
+gcc_dir=`gcc -print-file-name=. | /usr/bin/sed 's,/\.$,,'`
+gcc_ver=`gcc -dumpversion`
+
# An ERE matcher.
EGREP="grep -E"
@@ -7250,11 +7259,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
-predep_objects=""
+predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place after the objects being linked to create a
# shared library.
-postdep_objects=""
+postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place before the objects being linked to create a
# shared library.
@@ -7266,7 +7275,7 @@ postdeps=""
# The library search path used internally by the compiler when linking
# a shared library.
-compiler_lib_search_path=""
+compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
@@ -7346,10 +7355,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
-sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/3.3.5/ /fastfs/wir/local/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/"
+sys_lib_search_path_spec=`echo "/lib64 /usr/lib64 /usr/local/lib64" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
+sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
diff --git a/AMDiS/src/parallel/GlobalMatrixSolver.cc b/AMDiS/src/parallel/GlobalMatrixSolver.cc
index 173a008d3ce59547703f4f5c8ef6d15b44d6018e..19640da488829784916b56515141ebef2362755f 100644
--- a/AMDiS/src/parallel/GlobalMatrixSolver.cc
+++ b/AMDiS/src/parallel/GlobalMatrixSolver.cc
@@ -487,7 +487,8 @@ namespace AMDiS {
for (int i = 0; i < nComponents; i++) {
DOFVector<double> *dofvec = vec.getDOFVector(i);
for (int j = 0; j < nRankDofs; j++)
- (*dofvec)[meshDistributor->mapLocalToGlobal(j)] = vecPointer[j * nComponents + i];
+ (*dofvec)[meshDistributor->mapLocalToDofIndex(j)] =
+ vecPointer[j * nComponents + i];
}
VecRestoreArray(petscSolVec, &vecPointer);
diff --git a/AMDiS/src/parallel/ParallelDomainBase.cc b/AMDiS/src/parallel/ParallelDomainBase.cc
index 5db0992a126bfe6081bab3547a62927e36fb0899..7bce38ef58d9531b212f48567938ab44dba6b99f 100644
--- a/AMDiS/src/parallel/ParallelDomainBase.cc
+++ b/AMDiS/src/parallel/ParallelDomainBase.cc
@@ -1716,7 +1716,7 @@ namespace AMDiS {
DofIndexMap &rankDofsNewGlobalIndex)
{
mapLocalGlobalDofs.clear();
- mapLocalToDofIndex.clear();
+ mapLocalDofIndex.clear();
for (DofIndexMap::iterator dofIt = rankDofsNewLocalIndex.begin();
dofIt != rankDofsNewLocalIndex.end(); ++dofIt) {
@@ -1729,7 +1729,7 @@ namespace AMDiS {
for (DofIndexMap::iterator dofIt = rankOwnedDofsNewLocalIndex.begin();
dofIt != rankOwnedDofsNewLocalIndex.end(); ++dofIt)
- mapLocalToDofIndex[dofIt->second] = *(dofIt->first);
+ mapLocalDofIndex[dofIt->second] = *(dofIt->first);
}
@@ -1960,7 +1960,7 @@ namespace AMDiS {
serialize(out, recvDofs);
SerUtil::serialize(out, mapLocalGlobalDofs);
- SerUtil::serialize(out, mapLocalToDofIndex);
+ SerUtil::serialize(out, mapLocalDofIndex);
SerUtil::serialize(out, isRankDof);
serialize(out, vertexDof);
@@ -2003,7 +2003,7 @@ namespace AMDiS {
deserialize(in, recvDofs, dofMap);
SerUtil::deserialize(in, mapLocalGlobalDofs);
- SerUtil::deserialize(in, mapLocalToDofIndex);
+ SerUtil::deserialize(in, mapLocalDofIndex);
SerUtil::deserialize(in, isRankDof);
deserialize(in, vertexDof, dofMap);
diff --git a/AMDiS/src/parallel/ParallelDomainBase.h b/AMDiS/src/parallel/ParallelDomainBase.h
index aae1f2a8d6b8cc3086f8795cf428cca2ef573b84..3b291e5d5666cf317b100005caecbe5fdbf0af41 100644
--- a/AMDiS/src/parallel/ParallelDomainBase.h
+++ b/AMDiS/src/parallel/ParallelDomainBase.h
@@ -128,6 +128,11 @@ namespace AMDiS {
return mapLocalGlobalDofs[dof];
}
+ inline DegreeOfFreedom mapLocalToDofIndex(DegreeOfFreedom dof)
+ {
+ return mapLocalDofIndex[dof];
+ }
+
inline std::set<DegreeOfFreedom>& getPeriodicDof(DegreeOfFreedom dof)
{
return periodicDof[dof];
@@ -240,7 +245,7 @@ namespace AMDiS {
/** \brief
* This function create new mappings from local to global indices,
- * \ref mapLocalGlobalDofs, and from local to dof indices, \ref mapLocalToDofIndex.
+ * \ref mapLocalGlobalDofs, and from local to dof indices, \ref mapLocalDofIndex.
* Furthermore, using the first argument the dof indices in ranks partition are
* changed.
*
@@ -472,7 +477,7 @@ namespace AMDiS {
DofMapping mapLocalGlobalDofs;
/// Maps local dof indices to real dof indices.
- DofMapping mapLocalToDofIndex;
+ DofMapping mapLocalDofIndex;
/** \brief
* Maps all DOFs in ranks partition to a bool value. If it is true, the DOF is
diff --git a/AMDiS/src/parallel/ParallelDomainDbg.cc b/AMDiS/src/parallel/ParallelDomainDbg.cc
index bbba1f806a352b20f8467dbe679ce078915fff4c..4d0026fed809101717054a77b58dde16ef4ad73b 100644
--- a/AMDiS/src/parallel/ParallelDomainDbg.cc
+++ b/AMDiS/src/parallel/ParallelDomainDbg.cc
@@ -275,8 +275,8 @@ namespace AMDiS {
for (DofMapping::iterator it = pdb.mapLocalGlobalDofs.begin();
it != pdb.mapLocalGlobalDofs.end(); it++) {
DegreeOfFreedom localdof = -1;
- if (pdb.mapLocalToDofIndex.count(it->first) > 0)
- localdof = pdb.mapLocalToDofIndex[it->first];
+ if (pdb.mapLocalDofIndex.count(it->first) > 0)
+ localdof = pdb.mapLocalDofIndex[it->first];
std::cout << "DOF " << it->first << " "
<< it->second << " "