diff --git a/AMDiS/libtool b/AMDiS/libtool index c11ad13267993f3625e7cfd3b480b4ed83313116..5085abd47384de309fc7ed4c62546b5cf86917a0 100755 --- a/AMDiS/libtool +++ b/AMDiS/libtool @@ -128,7 +128,7 @@ old_postinstall_cmds="chmod 644 \$oldlib~\$RANLIB \$oldlib" old_postuninstall_cmds="" # A C compiler. -LTCC="gcc" +LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" # LTCC compiler flags. LTCFLAGS="-g -O2" @@ -259,7 +259,7 @@ LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64" old_archive_cmds="\$AR \$AR_FLAGS \$oldlib\$oldobjs~\$RANLIB \$oldlib" # A language specific compiler. -CC="gcc" +CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc" # Is the compiler the GNU compiler? with_gcc=yes @@ -274,7 +274,7 @@ wl="-Wl," pic_flag=" -fPIC -DPIC" # Compiler flag to prevent dynamic linking. -link_static_flag="-static" +link_static_flag="" # Does compiler simultaneously support -c and -o options? compiler_c_o="yes" @@ -8914,7 +8914,7 @@ LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64" old_archive_cmds="\$AR \$AR_FLAGS \$oldlib\$oldobjs~\$RANLIB \$oldlib" # A language specific compiler. -CC="g++" +CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicxx" # Is the compiler the GNU compiler? with_gcc=yes @@ -8929,7 +8929,7 @@ wl="-Wl," pic_flag=" -fPIC -DPIC" # Compiler flag to prevent dynamic linking. -link_static_flag="-static" +link_static_flag="" # Does compiler simultaneously support -c and -o options? compiler_c_o="yes" @@ -9039,17 +9039,17 @@ file_list_spec="" hardcode_action=immediate # The directories searched by this compiler when creating a shared library. -compiler_lib_search_dirs="/usr/lib64/gcc/x86_64-suse-linux/4.1.2 /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 /lib/../lib64 /usr/lib/../lib64 /fastfs/wir/local/lib /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.." +compiler_lib_search_dirs="/usr/lib64 /licsoft/libraries/openmpi/1.2.6/64bit/lib /usr/lib64/gcc/x86_64-suse-linux/4.1.2 /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 /lib/../lib64 /usr/lib/../lib64 /fastfs/wir/local/lib /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.." # Dependencies to place before and after the objects being linked to # create a shared library. predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o" postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o" predeps="" -postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s" +postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s" # The library search path used internally by the compiler when linking # a shared library. -compiler_lib_search_path="-L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/fastfs/wir/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.." +compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/fastfs/wir/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.." # ### END LIBTOOL TAG CONFIG: CXX diff --git a/AMDiS/src/Mesh.cc b/AMDiS/src/Mesh.cc index 027fd427bb5658ee557ce2e80f6bf529008ac929..cedead16e986d62417f2c97dd9a27f0dc4a30a31 100644 --- a/AMDiS/src/Mesh.cc +++ b/AMDiS/src/Mesh.cc @@ -1146,13 +1146,18 @@ namespace AMDiS { if (macroFilename.length()) { #ifdef HAVE_PARALLEL_DOMAIN_AMDIS - if (checkParallelMacroFile(macroFilename, periodicFilename, check)) + if (checkParallelMacroFile(macroFilename, periodicFilename, check)) { + std::string newPeriodicFilename = ""; + if (periodicFilename != "") + newPeriodicFilename = periodicFilename + ".tmp"; + macroFileInfo = MacroReader::readMacro(macroFilename + ".tmp", this, - periodicFilename + ".tmp", check); - else + newPeriodicFilename, check); + } else { macroFileInfo = MacroReader::readMacro(macroFilename, this, periodicFilename, check); + } #else // In sequentiel computations just read the macro file to the mesh.