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Commit 56c306c7 authored by Florian Stenger's avatar Florian Stenger
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ARH-reader for memory-blocks

parent 664280c4
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AMDiS/src/io/ArhReader.cc
View file @ 56c306c7
//
// Software License for AMDiS
//
// Copyright (c) 2010 Dresden University of Technology
// Copyright (c) 2010 Dresden University of Technology
// All rights reserved.
// Authors: Simon Vey, Thomas Witkowski et al.
//
......@@ -20,12 +20,12 @@
#include "DOFVector.h"
namespace AMDiS {
using namespace std;
void ArhReader::read(string filename, Mesh *mesh,
DOFVector<double>* vec0,
DOFVector<double>* vec0,
DOFVector<double>* vec1,
DOFVector<double>* vec2,
bool writeParallel,
......@@ -41,12 +41,12 @@ namespace AMDiS {
vecs.push_back(vec2);
for (size_t i = 3; i < nValueVectors; i++)
vecs.push_back(NULL);
ArhReader::read(filename, mesh, vecs, writeParallel, nProcs);
}
void ArhReader::read(string filename, Mesh *mesh,
void ArhReader::read(string filename, Mesh *mesh,
vector<DOFVector<double>*> vecs,
bool writeParallel,
int nProcs)
......@@ -57,9 +57,9 @@ namespace AMDiS {
using boost::lexical_cast;
int sPos = filename.find(".arh");
TEST_EXIT(sPos >= 0)("Failed to find file postfix!\n");
string name = filename.substr(0, sPos);
string name = filename.substr(0, sPos);
if (nProcs == -1) {
if (nProcs == -1) {
#ifdef HAVE_PARALLEL_DOMAIN_AMDIS
string procFilename = name + "-p" + lexical_cast<string>(MPI::COMM_WORLD.Get_rank()) + "-.arh";
readFile(procFilename, mesh, vecs);
......@@ -78,8 +78,8 @@ namespace AMDiS {
MSG("ARH file read from: %s\n", filename.c_str());
}
void ArhReader::readFile(string filename,
void ArhReader::readFile(string filename,
Mesh *mesh,
vector<DOFVector<double>*> vecs)
{
......@@ -90,7 +90,7 @@ namespace AMDiS {
for (std::deque<MacroElement*>::iterator it = mesh->getMacroElements().begin();
it != mesh->getMacroElements().end(); ++it)
macroInMesh.insert((*it)->getIndex());
RefinementManager *refManager = NULL;
switch (mesh->getDim()) {
......@@ -121,7 +121,7 @@ namespace AMDiS {
file.read(reinterpret_cast<char*>(&nAllValues), 4);
TEST_EXIT(nValueVectors == vecs.size())
("File %s has %d vectors, but %d DOFVectors are provided!\n",
("File %s has %d vectors, but %d DOFVectors are provided!\n",
filename.c_str(), nValueVectors, vecs.size());
for (unsigned int i = 0; i < nMacroElements; i++) {
......@@ -141,15 +141,17 @@ namespace AMDiS {
if (macroInMesh.count(elIndex) == 1)
elementStructure.fitMeshToStructure(mesh, refManager, false, elIndex);
uint32_t nValuesPerVector = 0;
file.read(reinterpret_cast<char*>(&nValuesPerVector), 4);
if(nValueVectors > 0){
uint32_t nValuesPerVector = 0;
file.read(reinterpret_cast<char*>(&nValuesPerVector), 4);
for (unsigned int j = 0; j < nValueVectors; j++) {
vector<double> values(nValuesPerVector);
file.read(reinterpret_cast<char*>(&(values[0])), 8 * nValuesPerVector);
if (vecs[j] != NULL) {
if (macroInMesh.count(elIndex) == 1)
setDofValues(elIndex, mesh, values, vecs[j]);
for (unsigned int j = 0; j < nValueVectors; j++) {
vector<double> values(nValuesPerVector);
file.read(reinterpret_cast<char*>(&(values[0])), 8 * nValuesPerVector);
if (vecs[j] != NULL) {
if (macroInMesh.count(elIndex) == 1)
setDofValues(elIndex, mesh, values, vecs[j]);
}
}
}
}
......@@ -174,7 +176,7 @@ namespace AMDiS {
if (!macroElement) {
Element *mEl = elInfo->getMacroElement()->getElement();
for (int i = 0; i < mesh->getGeo(VERTEX); i++)
(*vec)[mEl->getDof(i, 0)] = values[valuePos++];
(*vec)[mEl->getDof(i, 0)] = values[valuePos++];
macroElement = true;
}
......@@ -185,4 +187,130 @@ namespace AMDiS {
elInfo = stack.traverseNext(elInfo);
}
}
//the following three functions are identical to read/readfile except that they read from
//a block of memory instead of from a file
void ArhReader::readFromMemoryBlock(vector<char> &data, Mesh *mesh,
DOFVector<double>* vec0,
DOFVector<double>* vec1,
DOFVector<double>* vec2,
bool writeParallel,
int nProcs)
{
uint32_t nValueVectors;
memcpy(reinterpret_cast<char*>(&nValueVectors), &data[8], 4);
vector<DOFVector<double>*> vecs(0);
if (nValueVectors > 0)
vecs.push_back(vec0);
if (nValueVectors > 1)
vecs.push_back(vec1);
if (nValueVectors > 2)
vecs.push_back(vec2);
for (uint32_t i = 3; i < nValueVectors; i++)
vecs.push_back(NULL);
readFromMemoryBlock(data, mesh, vecs, writeParallel, nProcs);
}
void ArhReader::readFromMemoryBlock(vector<char> &data, Mesh *mesh,
vector<DOFVector<double>*> vecs,
bool writeParallel,
int nProcs)
{
FUNCNAME("ArhReader::readFromMemoryBlock()");
if (writeParallel) {
ERROR_EXIT("Reading a hierarchy from several memory blocks is not implemented yet!\n");
} else {
readBlock(data, mesh, vecs);
}
}
void ArhReader::readBlock(vector<char> &data,
Mesh *mesh,
vector<DOFVector<double>*> vecs)
{
FUNCNAME("ArhReader::readBlock()");
// === Get set of all macro elements in mesh. ===
std::set<int> macroInMesh;
for (std::deque<MacroElement*>::iterator it = mesh->getMacroElements().begin();
it != mesh->getMacroElements().end(); ++it)
macroInMesh.insert((*it)->getIndex());
RefinementManager *refManager = NULL;
switch (mesh->getDim()) {
case 2:
refManager = new RefinementManager2d();
break;
case 3:
refManager = new RefinementManager3d();
break;
default:
ERROR_EXIT("Should not happen!\n");
}
string typeId = "";
uint32_t nMacroElements = 0;
uint32_t nValueVectors = 0;
uint32_t nAllValues = 0;
uint32_t mem_index = 0;
memcpy(const_cast<char*>(typeId.data()), &data[mem_index], 4);
mem_index += 4;
memcpy(reinterpret_cast<char*>(&nMacroElements), &data[mem_index], 4);
mem_index += 4;
memcpy(reinterpret_cast<char*>(&nValueVectors), &data[mem_index], 4);
mem_index += 4;
memcpy(reinterpret_cast<char*>(&nAllValues), &data[mem_index], 4);
mem_index += 4;
TEST_EXIT(nValueVectors == vecs.size())
("data has %d vectors, but %d DOFVectors are provided!\n", nValueVectors, vecs.size());
for (unsigned int i = 0; i < nMacroElements; i++) {
uint32_t elIndex = 0;
uint32_t nStructureCodes = 0;
uint32_t codeSize = 0;
memcpy(reinterpret_cast<char*>(&elIndex), &data[mem_index], 4);
mem_index += 4;
memcpy(reinterpret_cast<char*>(&nStructureCodes), &data[mem_index], 4);
mem_index += 4;
memcpy(reinterpret_cast<char*>(&codeSize), &data[mem_index], 4);
mem_index += 4;
vector<uint64_t> structureCode(nStructureCodes);
memcpy(reinterpret_cast<char*>(&structureCode[0]), &data[mem_index], 8 * nStructureCodes);
mem_index += 8 * nStructureCodes;
MeshStructure elementStructure;
elementStructure.init(structureCode, codeSize);
if (macroInMesh.count(elIndex) == 1)
elementStructure.fitMeshToStructure(mesh, refManager, false, elIndex);
if(nValueVectors > 0){
uint32_t nValuesPerVector = 0;
memcpy(reinterpret_cast<char*>(&nValuesPerVector), &data[mem_index], 4);
mem_index += 4;
for (unsigned int j = 0; j < nValueVectors; j++) {
vector<double> values(nValuesPerVector);
memcpy(reinterpret_cast<char*>(&values[0]), &data[mem_index], 8 * nValuesPerVector);
mem_index += 8 * nValuesPerVector;
if (vecs[j] != NULL) {
if (macroInMesh.count(elIndex) == 1)
setDofValues(elIndex, mesh, values, vecs[j]);
}
}
}
}
delete refManager;
}
}
AMDiS/src/io/ArhReader.h
View file @ 56c306c7
......@@ -8,7 +8,7 @@
//
// Software License for AMDiS
//
// Copyright (c) 2010 Dresden University of Technology
// Copyright (c) 2010 Dresden University of Technology
// All rights reserved.
// Authors: Simon Vey, Thomas Witkowski et al.
//
......@@ -33,9 +33,9 @@ namespace AMDiS {
{
public:
static void read(string filename, Mesh *mesh,
DOFVector<double>* vec0 = NULL,
DOFVector<double>* vec0 = NULL,
DOFVector<double>* vec1 = NULL,
DOFVector<double>* vec2 = NULL,
DOFVector<double>* vec2 = NULL,
#ifdef HAVE_PARALLEL_DOMAIN_AMDIS
bool writeParallel = true,
#else
......@@ -43,7 +43,7 @@ namespace AMDiS {
#endif
int nProcs = -1);
static void read(string filename, Mesh *mesh,
static void read(string filename, Mesh *mesh,
vector<DOFVector<double>*> vecs,
#ifdef HAVE_PARALLEL_DOMAIN_AMDIS
bool writeParallel = true,
......@@ -52,34 +52,59 @@ namespace AMDiS {
#endif
int nProcs = -1);
static void readFromMemoryBlock(vector<char> &data, Mesh *mesh,
DOFVector<double>* vec0 = NULL,
DOFVector<double>* vec1 = NULL,
DOFVector<double>* vec2 = NULL,
#ifdef HAVE_PARALLEL_DOMAIN_AMDIS
bool writeParallel = true,
#else
bool writeParallel = false,
#endif
int nProcs = -1);
static void readFromMemoryBlock(vector<char> &data, Mesh *mesh,
vector<DOFVector<double>*> vecs,
#ifdef HAVE_PARALLEL_DOMAIN_AMDIS
bool writeParallel = true,
#else
bool writeParallel = false,
#endif
int nProcs = -1);
static int getNumValueVectors(string filename)
{
{
ifstream file;
file.open(filename.c_str(), ios::in | ios::binary);
string typeId = "";
uint32_t nMacroElements = 0;
uint32_t nValueVectors = 0;
uint32_t nAllValues = 0;
//uint32_t nAllValues = 0;
file.read(const_cast<char*>(typeId.data()), 4);
file.read(reinterpret_cast<char*>(&nMacroElements), 4);
file.read(reinterpret_cast<char*>(&nValueVectors), 4);
file.read(reinterpret_cast<char*>(&nAllValues), 4);
//file.read(reinterpret_cast<char*>(&nAllValues), 4);
file.close();
return nValueVectors;
}
private:
static void readFile(string filename,
static void readFile(string filename,
Mesh *mesh,
vector<DOFVector<double>*> vecs);
static void setDofValues(int macroElIndex, Mesh *mesh,
static void setDofValues(int macroElIndex, Mesh *mesh,
vector<double>& values, DOFVector<double>* vec);
static void readBlock(vector<char> &data,
Mesh *mesh,
vector<DOFVector<double>*> vecs);
};
}
......
AMDiS/src/io/ArhWriter.cc
View file @ 56c306c7
......@@ -140,11 +140,13 @@ namespace AMDiS {
file.write(reinterpret_cast<char*>(&(const_cast<vector<uint64_t>&>(code.getCode())[0])),
8 * nStructureCodes);
uint32_t nValuesPerVector = (values.size() > 0 ? values[0].size() : 0);
file.write(reinterpret_cast<char*>(&nValuesPerVector), 4);
if(values.size() > 0){
uint32_t nValuesPerVector = values[0].size();
file.write(reinterpret_cast<char*>(&nValuesPerVector), 4);
for (unsigned int i = 0; i < values.size(); i++)
file.write(reinterpret_cast<char*>(&(values[i][0])), 8 * nValuesPerVector);
for (unsigned int i = 0; i < values.size(); i++)
file.write(reinterpret_cast<char*>(&(values[i][0])), 8 * nValuesPerVector);
}
}
}
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