diff --git a/AMDiS/Makefile.in b/AMDiS/Makefile.in
index e9c5bf1ac8d8fe42b6542b15014796a2e5651527..273adb578f92efac8590fbcba071cf9302e9d9b3 100644
--- a/AMDiS/Makefile.in
+++ b/AMDiS/Makefile.in
@@ -1,8 +1,9 @@
-# Makefile.in generated by automake 1.9.6 from Makefile.am.
+# Makefile.in generated by automake 1.11 from Makefile.am.
# @configure_input@
# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005 Free Software Foundation, Inc.
+# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation,
+# Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.
@@ -13,15 +14,12 @@
# PARTICULAR PURPOSE.
@SET_MAKE@
-srcdir = @srcdir@
-top_srcdir = @top_srcdir@
VPATH = @srcdir@
pkgdatadir = $(datadir)/@PACKAGE@
-pkglibdir = $(libdir)/@PACKAGE@
pkgincludedir = $(includedir)/@PACKAGE@
-top_builddir = .
+pkglibdir = $(libdir)/@PACKAGE@
+pkglibexecdir = $(libexecdir)/@PACKAGE@
am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-INSTALL = @INSTALL@
install_sh_DATA = $(install_sh) -c -m 644
install_sh_PROGRAM = $(install_sh) -c
install_sh_SCRIPT = $(install_sh) -c
@@ -35,27 +33,34 @@ PRE_UNINSTALL = :
POST_UNINSTALL = :
build_triplet = @build@
host_triplet = @host@
+subdir = .
DIST_COMMON = README $(am__configure_deps) $(srcdir)/Makefile.am \
$(srcdir)/Makefile.in $(top_srcdir)/configure AUTHORS COPYING \
ChangeLog INSTALL NEWS config.guess config.sub depcomp \
install-sh ltmain.sh missing
-subdir = .
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
am__aclocal_m4_deps = $(top_srcdir)/configure.ac
am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
$(ACLOCAL_M4)
am__CONFIG_DISTCLEAN_FILES = config.status config.cache config.log \
- configure.lineno configure.status.lineno
+ configure.lineno config.status.lineno
mkinstalldirs = $(install_sh) -d
CONFIG_CLEAN_FILES =
+CONFIG_CLEAN_VPATH_FILES =
SOURCES =
DIST_SOURCES =
RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \
html-recursive info-recursive install-data-recursive \
- install-exec-recursive install-info-recursive \
- install-recursive installcheck-recursive installdirs-recursive \
- pdf-recursive ps-recursive uninstall-info-recursive \
- uninstall-recursive
+ install-dvi-recursive install-exec-recursive \
+ install-html-recursive install-info-recursive \
+ install-pdf-recursive install-ps-recursive install-recursive \
+ installcheck-recursive installdirs-recursive pdf-recursive \
+ ps-recursive uninstall-recursive
+RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \
+ distclean-recursive maintainer-clean-recursive
+AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \
+ $(RECURSIVE_CLEAN_TARGETS:-recursive=) tags TAGS ctags CTAGS \
+ distdir dist dist-all distcheck
ETAGS = etags
CTAGS = ctags
DIST_SUBDIRS = $(SUBDIRS)
@@ -63,22 +68,39 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
distdir = $(PACKAGE)-$(VERSION)
top_distdir = $(distdir)
am__remove_distdir = \
- { test ! -d $(distdir) \
- || { find $(distdir) -type d ! -perm -200 -exec chmod u+w {} ';' \
- && rm -fr $(distdir); }; }
+ { test ! -d "$(distdir)" \
+ || { find "$(distdir)" -type d ! -perm -200 -exec chmod u+w {} ';' \
+ && rm -fr "$(distdir)"; }; }
+am__relativize = \
+ dir0=`pwd`; \
+ sed_first='s,^\([^/]*\)/.*$$,\1,'; \
+ sed_rest='s,^[^/]*/*,,'; \
+ sed_last='s,^.*/\([^/]*\)$$,\1,'; \
+ sed_butlast='s,/*[^/]*$$,,'; \
+ while test -n "$$dir1"; do \
+ first=`echo "$$dir1" | sed -e "$$sed_first"`; \
+ if test "$$first" != "."; then \
+ if test "$$first" = ".."; then \
+ dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
+ dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
+ else \
+ first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
+ if test "$$first2" = "$$first"; then \
+ dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
+ else \
+ dir2="../$$dir2"; \
+ fi; \
+ dir0="$$dir0"/"$$first"; \
+ fi; \
+ fi; \
+ dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
+ done; \
+ reldir="$$dir2"
DIST_ARCHIVES = $(distdir).tar.gz
GZIP_ENV = --best
distuninstallcheck_listfiles = find . -type f -print
distcleancheck_listfiles = find . -type f -print
ACLOCAL = @ACLOCAL@
-AMDEP_FALSE = @AMDEP_FALSE@
-AMDEP_TRUE = @AMDEP_TRUE@
-AMDIS_DEBUG_FALSE = @AMDIS_DEBUG_FALSE@
-AMDIS_DEBUG_TRUE = @AMDIS_DEBUG_TRUE@
-AMDIS_INTEL_FALSE = @AMDIS_INTEL_FALSE@
-AMDIS_INTEL_TRUE = @AMDIS_INTEL_TRUE@
-AMDIS_OPENMP_FALSE = @AMDIS_OPENMP_FALSE@
-AMDIS_OPENMP_TRUE = @AMDIS_OPENMP_TRUE@
AMTAR = @AMTAR@
AR = @AR@
AUTOCONF = @AUTOCONF@
@@ -97,45 +119,46 @@ CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEFS = @DEFS@
DEPDIR = @DEPDIR@
+DSYMUTIL = @DSYMUTIL@
+DUMPBIN = @DUMPBIN@
DUNE_DIR = @DUNE_DIR@
-ECHO = @ECHO@
ECHO_C = @ECHO_C@
ECHO_N = @ECHO_N@
ECHO_T = @ECHO_T@
EGREP = @EGREP@
-ENABLE_BOOST_FALSE = @ENABLE_BOOST_FALSE@
-ENABLE_BOOST_TRUE = @ENABLE_BOOST_TRUE@
-ENABLE_DUNE_FALSE = @ENABLE_DUNE_FALSE@
-ENABLE_DUNE_TRUE = @ENABLE_DUNE_TRUE@
-ENABLE_MKL_FALSE = @ENABLE_MKL_FALSE@
-ENABLE_MKL_TRUE = @ENABLE_MKL_TRUE@
-ENABLE_UMFPACK_FALSE = @ENABLE_UMFPACK_FALSE@
-ENABLE_UMFPACK_TRUE = @ENABLE_UMFPACK_TRUE@
EXEEXT = @EXEEXT@
-F77 = @F77@
-FFLAGS = @FFLAGS@
+FGREP = @FGREP@
+GREP = @GREP@
+INSTALL = @INSTALL@
INSTALL_DATA = @INSTALL_DATA@
INSTALL_PROGRAM = @INSTALL_PROGRAM@
INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
LIBS = @LIBS@
LIBTOOL = @LIBTOOL@
+LIPO = @LIPO@
LN_S = @LN_S@
LTLIBOBJS = @LTLIBOBJS@
MAINT = @MAINT@
-MAINTAINER_MODE_FALSE = @MAINTAINER_MODE_FALSE@
-MAINTAINER_MODE_TRUE = @MAINTAINER_MODE_TRUE@
MAKEINFO = @MAKEINFO@
+MKDIR_P = @MKDIR_P@
MPI_DIR = @MPI_DIR@
+NM = @NM@
+NMEDIT = @NMEDIT@
+OBJDUMP = @OBJDUMP@
OBJEXT = @OBJEXT@
OPENMP_FLAG = @OPENMP_FLAG@
+OTOOL = @OTOOL@
+OTOOL64 = @OTOOL64@
PACKAGE = @PACKAGE@
PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
PACKAGE_NAME = @PACKAGE_NAME@
PACKAGE_STRING = @PACKAGE_STRING@
PACKAGE_TARNAME = @PACKAGE_TARNAME@
+PACKAGE_URL = @PACKAGE_URL@
PACKAGE_VERSION = @PACKAGE_VERSION@
PATH_SEPARATOR = @PATH_SEPARATOR@
PETSC_DIR = @PETSC_DIR@
@@ -143,21 +166,14 @@ RANLIB = @RANLIB@
SET_MAKE = @SET_MAKE@
SHELL = @SHELL@
STRIP = @STRIP@
-USE_PARALLEL_AMDIS_FALSE = @USE_PARALLEL_AMDIS_FALSE@
-USE_PARALLEL_AMDIS_TRUE = @USE_PARALLEL_AMDIS_TRUE@
-USE_PARALLEL_DOMAIN_AMDIS_FALSE = @USE_PARALLEL_DOMAIN_AMDIS_FALSE@
-USE_PARALLEL_DOMAIN_AMDIS_TRUE = @USE_PARALLEL_DOMAIN_AMDIS_TRUE@
VERSION = @VERSION@
-ac_ct_AR = @ac_ct_AR@
+abs_builddir = @abs_builddir@
+abs_srcdir = @abs_srcdir@
+abs_top_builddir = @abs_top_builddir@
+abs_top_srcdir = @abs_top_srcdir@
ac_ct_CC = @ac_ct_CC@
ac_ct_CXX = @ac_ct_CXX@
-ac_ct_F77 = @ac_ct_F77@
-ac_ct_RANLIB = @ac_ct_RANLIB@
-ac_ct_STRIP = @ac_ct_STRIP@
-am__fastdepCC_FALSE = @am__fastdepCC_FALSE@
-am__fastdepCC_TRUE = @am__fastdepCC_TRUE@
-am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@
-am__fastdepCXX_TRUE = @am__fastdepCXX_TRUE@
+ac_ct_DUMPBIN = @ac_ct_DUMPBIN@
am__include = @am__include@
am__leading_dot = @am__leading_dot@
am__quote = @am__quote@
@@ -169,28 +185,41 @@ build_alias = @build_alias@
build_cpu = @build_cpu@
build_os = @build_os@
build_vendor = @build_vendor@
+builddir = @builddir@
datadir = @datadir@
+datarootdir = @datarootdir@
+docdir = @docdir@
+dvidir = @dvidir@
exec_prefix = @exec_prefix@
host = @host@
host_alias = @host_alias@
host_cpu = @host_cpu@
host_os = @host_os@
host_vendor = @host_vendor@
+htmldir = @htmldir@
includedir = @includedir@
infodir = @infodir@
install_sh = @install_sh@
libdir = @libdir@
libexecdir = @libexecdir@
+localedir = @localedir@
localstatedir = @localstatedir@
+lt_ECHO = @lt_ECHO@
mandir = @mandir@
mkdir_p = @mkdir_p@
oldincludedir = @oldincludedir@
+pdfdir = @pdfdir@
prefix = @prefix@
program_transform_name = @program_transform_name@
+psdir = @psdir@
sbindir = @sbindir@
sharedstatedir = @sharedstatedir@
+srcdir = @srcdir@
sysconfdir = @sysconfdir@
target_alias = @target_alias@
+top_build_prefix = @top_build_prefix@
+top_builddir = @top_builddir@
+top_srcdir = @top_srcdir@
SUBDIRS = lib bin
EXTRA_DIST = demo
all: all-recursive
@@ -202,15 +231,15 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(am__confi
@for dep in $?; do \
case '$(am__configure_deps)' in \
*$$dep*) \
- echo ' cd $(srcdir) && $(AUTOMAKE) --gnu '; \
- cd $(srcdir) && $(AUTOMAKE) --gnu \
+ echo ' cd $(srcdir) && $(AUTOMAKE) --gnu'; \
+ $(am__cd) $(srcdir) && $(AUTOMAKE) --gnu \
&& exit 0; \
exit 1;; \
esac; \
done; \
- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu Makefile'; \
- cd $(top_srcdir) && \
- $(AUTOMAKE) --gnu Makefile
+ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu Makefile'; \
+ $(am__cd) $(top_srcdir) && \
+ $(AUTOMAKE) --gnu Makefile
.PRECIOUS: Makefile
Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
@case '$?' in \
@@ -226,9 +255,10 @@ $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENC
$(SHELL) ./config.status --recheck
$(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps)
- cd $(srcdir) && $(AUTOCONF)
+ $(am__cd) $(srcdir) && $(AUTOCONF)
$(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps)
- cd $(srcdir) && $(ACLOCAL) $(ACLOCAL_AMFLAGS)
+ $(am__cd) $(srcdir) && $(ACLOCAL) $(ACLOCAL_AMFLAGS)
+$(am__aclocal_m4_deps):
mostlyclean-libtool:
-rm -f *.lo
@@ -237,8 +267,7 @@ clean-libtool:
-rm -rf .libs _libs
distclean-libtool:
- -rm -f libtool
-uninstall-info-am:
+ -rm -f libtool config.lt
# This directory's subdirectories are mostly independent; you can cd
# into them and run `make' without going through this Makefile.
@@ -264,15 +293,14 @@ $(RECURSIVE_TARGETS):
else \
local_target="$$target"; \
fi; \
- (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+ ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
|| eval $$failcom; \
done; \
if test "$$dot_seen" = "no"; then \
$(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
fi; test -z "$$fail"
-mostlyclean-recursive clean-recursive distclean-recursive \
-maintainer-clean-recursive:
+$(RECURSIVE_CLEAN_TARGETS):
@failcom='exit 1'; \
for f in x $$MAKEFLAGS; do \
case $$f in \
@@ -299,16 +327,16 @@ maintainer-clean-recursive:
else \
local_target="$$target"; \
fi; \
- (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+ ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
|| eval $$failcom; \
done && test -z "$$fail"
tags-recursive:
list='$(SUBDIRS)'; for subdir in $$list; do \
- test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
+ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
done
ctags-recursive:
list='$(SUBDIRS)'; for subdir in $$list; do \
- test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
+ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
done
ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
@@ -316,14 +344,14 @@ ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
unique=`for i in $$list; do \
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
done | \
- $(AWK) ' { files[$$0] = 1; } \
- END { for (i in files) print i; }'`; \
+ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+ END { if (nonempty) { for (i in files) print i; }; }'`; \
mkid -fID $$unique
tags: TAGS
TAGS: tags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
$(TAGS_FILES) $(LISP)
- tags=; \
+ set x; \
here=`pwd`; \
if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
include_option=--etags-include; \
@@ -335,92 +363,113 @@ TAGS: tags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
list='$(SUBDIRS)'; for subdir in $$list; do \
if test "$$subdir" = .; then :; else \
test ! -f $$subdir/TAGS || \
- tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
+ set "$$@" "$$include_option=$$here/$$subdir/TAGS"; \
fi; \
done; \
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
unique=`for i in $$list; do \
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
done | \
- $(AWK) ' { files[$$0] = 1; } \
- END { for (i in files) print i; }'`; \
- if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
+ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+ END { if (nonempty) { for (i in files) print i; }; }'`; \
+ shift; \
+ if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
test -n "$$unique" || unique=$$empty_fix; \
- $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
- $$tags $$unique; \
+ if test $$# -gt 0; then \
+ $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+ "$$@" $$unique; \
+ else \
+ $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+ $$unique; \
+ fi; \
fi
ctags: CTAGS
CTAGS: ctags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
$(TAGS_FILES) $(LISP)
- tags=; \
- here=`pwd`; \
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
unique=`for i in $$list; do \
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
done | \
- $(AWK) ' { files[$$0] = 1; } \
- END { for (i in files) print i; }'`; \
- test -z "$(CTAGS_ARGS)$$tags$$unique" \
+ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+ END { if (nonempty) { for (i in files) print i; }; }'`; \
+ test -z "$(CTAGS_ARGS)$$unique" \
|| $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
- $$tags $$unique
+ $$unique
GTAGS:
here=`$(am__cd) $(top_builddir) && pwd` \
- && cd $(top_srcdir) \
- && gtags -i $(GTAGS_ARGS) $$here
+ && $(am__cd) $(top_srcdir) \
+ && gtags -i $(GTAGS_ARGS) "$$here"
distclean-tags:
-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
distdir: $(DISTFILES)
$(am__remove_distdir)
- mkdir $(distdir)
- @srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \
- topsrcdirstrip=`echo "$(top_srcdir)" | sed 's|.|.|g'`; \
- list='$(DISTFILES)'; for file in $$list; do \
- case $$file in \
- $(srcdir)/*) file=`echo "$$file" | sed "s|^$$srcdirstrip/||"`;; \
- $(top_srcdir)/*) file=`echo "$$file" | sed "s|^$$topsrcdirstrip/|$(top_builddir)/|"`;; \
- esac; \
+ test -d "$(distdir)" || mkdir "$(distdir)"
+ @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+ topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+ list='$(DISTFILES)'; \
+ dist_files=`for file in $$list; do echo $$file; done | \
+ sed -e "s|^$$srcdirstrip/||;t" \
+ -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+ case $$dist_files in \
+ */*) $(MKDIR_P) `echo "$$dist_files" | \
+ sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+ sort -u` ;; \
+ esac; \
+ for file in $$dist_files; do \
if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
- dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
- if test "$$dir" != "$$file" && test "$$dir" != "."; then \
- dir="/$$dir"; \
- $(mkdir_p) "$(distdir)$$dir"; \
- else \
- dir=''; \
- fi; \
if test -d $$d/$$file; then \
+ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+ if test -d "$(distdir)/$$file"; then \
+ find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
+ fi; \
if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
- cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+ cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
+ find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
fi; \
- cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+ cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
else \
- test -f $(distdir)/$$file \
- || cp -p $$d/$$file $(distdir)/$$file \
+ test -f "$(distdir)/$$file" \
+ || cp -p $$d/$$file "$(distdir)/$$file" \
|| exit 1; \
fi; \
done
- list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
+ @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
if test "$$subdir" = .; then :; else \
test -d "$(distdir)/$$subdir" \
- || $(mkdir_p) "$(distdir)/$$subdir" \
+ || $(MKDIR_P) "$(distdir)/$$subdir" \
|| exit 1; \
- distdir=`$(am__cd) $(distdir) && pwd`; \
- top_distdir=`$(am__cd) $(top_distdir) && pwd`; \
- (cd $$subdir && \
+ fi; \
+ done
+ @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
+ if test "$$subdir" = .; then :; else \
+ dir1=$$subdir; dir2="$(distdir)/$$subdir"; \
+ $(am__relativize); \
+ new_distdir=$$reldir; \
+ dir1=$$subdir; dir2="$(top_distdir)"; \
+ $(am__relativize); \
+ new_top_distdir=$$reldir; \
+ echo " (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) top_distdir="$$new_top_distdir" distdir="$$new_distdir" \\"; \
+ echo " am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)"; \
+ ($(am__cd) $$subdir && \
$(MAKE) $(AM_MAKEFLAGS) \
- top_distdir="$$top_distdir" \
- distdir="$$distdir/$$subdir" \
+ top_distdir="$$new_top_distdir" \
+ distdir="$$new_distdir" \
+ am__remove_distdir=: \
+ am__skip_length_check=: \
+ am__skip_mode_fix=: \
distdir) \
|| exit 1; \
fi; \
done
- -find $(distdir) -type d ! -perm -777 -exec chmod a+rwx {} \; -o \
+ -test -n "$(am__skip_mode_fix)" \
+ || find "$(distdir)" -type d ! -perm -777 -exec chmod a+rwx {} \; -o \
! -type d ! -perm -444 -links 1 -exec chmod a+r {} \; -o \
! -type d ! -perm -400 -exec chmod a+r {} \; -o \
- ! -type d ! -perm -444 -exec $(SHELL) $(install_sh) -c -m a+r {} {} \; \
- || chmod -R a+r $(distdir)
+ ! -type d ! -perm -444 -exec $(install_sh) -c -m a+r {} {} \; \
+ || chmod -R a+r "$(distdir)"
dist-gzip: distdir
tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
$(am__remove_distdir)
@@ -429,6 +478,14 @@ dist-bzip2: distdir
tardir=$(distdir) && $(am__tar) | bzip2 -9 -c >$(distdir).tar.bz2
$(am__remove_distdir)
+dist-lzma: distdir
+ tardir=$(distdir) && $(am__tar) | lzma -9 -c >$(distdir).tar.lzma
+ $(am__remove_distdir)
+
+dist-xz: distdir
+ tardir=$(distdir) && $(am__tar) | xz -c >$(distdir).tar.xz
+ $(am__remove_distdir)
+
dist-tarZ: distdir
tardir=$(distdir) && $(am__tar) | compress -c >$(distdir).tar.Z
$(am__remove_distdir)
@@ -455,6 +512,10 @@ distcheck: dist
GZIP=$(GZIP_ENV) gunzip -c $(distdir).tar.gz | $(am__untar) ;;\
*.tar.bz2*) \
bunzip2 -c $(distdir).tar.bz2 | $(am__untar) ;;\
+ *.tar.lzma*) \
+ unlzma -c $(distdir).tar.lzma | $(am__untar) ;;\
+ *.tar.xz*) \
+ xz -dc $(distdir).tar.xz | $(am__untar) ;;\
*.tar.Z*) \
uncompress -c $(distdir).tar.Z | $(am__untar) ;;\
*.shar.gz*) \
@@ -466,9 +527,11 @@ distcheck: dist
mkdir $(distdir)/_build
mkdir $(distdir)/_inst
chmod a-w $(distdir)
+ test -d $(distdir)/_build || exit 0; \
dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
&& dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
- && cd $(distdir)/_build \
+ && am__cwd=`pwd` \
+ && $(am__cd) $(distdir)/_build \
&& ../configure --srcdir=.. --prefix="$$dc_install_base" \
$(DISTCHECK_CONFIGURE_FLAGS) \
&& $(MAKE) $(AM_MAKEFLAGS) \
@@ -490,13 +553,15 @@ distcheck: dist
&& rm -rf "$$dc_destdir" \
&& $(MAKE) $(AM_MAKEFLAGS) dist \
&& rm -rf $(DIST_ARCHIVES) \
- && $(MAKE) $(AM_MAKEFLAGS) distcleancheck
+ && $(MAKE) $(AM_MAKEFLAGS) distcleancheck \
+ && cd "$$am__cwd" \
+ || exit 1
$(am__remove_distdir)
@(echo "$(distdir) archives ready for distribution: "; \
list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \
- sed -e '1{h;s/./=/g;p;x;}' -e '$${p;x;}'
+ sed -e 1h -e 1s/./=/g -e 1p -e 1x -e '$$p' -e '$$x'
distuninstallcheck:
- @cd $(distuninstallcheck_dir) \
+ @$(am__cd) '$(distuninstallcheck_dir)' \
&& test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \
|| { echo "ERROR: files left after uninstall:" ; \
if test -n "$(DESTDIR)"; then \
@@ -538,6 +603,7 @@ clean-generic:
distclean-generic:
-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+ -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
maintainer-clean-generic:
@echo "This command is intended for maintainers to use"
@@ -558,18 +624,38 @@ dvi-am:
html: html-recursive
+html-am:
+
info: info-recursive
info-am:
install-data-am:
+install-dvi: install-dvi-recursive
+
+install-dvi-am:
+
install-exec-am:
+install-html: install-html-recursive
+
+install-html-am:
+
install-info: install-info-recursive
+install-info-am:
+
install-man:
+install-pdf: install-pdf-recursive
+
+install-pdf-am:
+
+install-ps: install-ps-recursive
+
+install-ps-am:
+
installcheck-am:
maintainer-clean: maintainer-clean-recursive
@@ -590,24 +676,27 @@ ps: ps-recursive
ps-am:
-uninstall-am: uninstall-info-am
+uninstall-am:
-uninstall-info: uninstall-info-recursive
+.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) ctags-recursive \
+ install-am install-strip tags-recursive
-.PHONY: $(RECURSIVE_TARGETS) CTAGS GTAGS all all-am am--refresh check \
- check-am clean clean-generic clean-libtool clean-recursive \
- ctags ctags-recursive dist dist-all dist-bzip2 dist-gzip \
- dist-shar dist-tarZ dist-zip distcheck distclean \
- distclean-generic distclean-libtool distclean-recursive \
+.PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
+ all all-am am--refresh check check-am clean clean-generic \
+ clean-libtool ctags ctags-recursive dist dist-all dist-bzip2 \
+ dist-gzip dist-lzma dist-shar dist-tarZ dist-xz dist-zip \
+ distcheck distclean distclean-generic distclean-libtool \
distclean-tags distcleancheck distdir distuninstallcheck dvi \
dvi-am html html-am info info-am install install-am \
- install-data install-data-am install-exec install-exec-am \
- install-info install-info-am install-man install-strip \
+ install-data install-data-am install-dvi install-dvi-am \
+ install-exec install-exec-am install-html install-html-am \
+ install-info install-info-am install-man install-pdf \
+ install-pdf-am install-ps install-ps-am install-strip \
installcheck installcheck-am installdirs installdirs-am \
- maintainer-clean maintainer-clean-generic \
- maintainer-clean-recursive mostlyclean mostlyclean-generic \
- mostlyclean-libtool mostlyclean-recursive pdf pdf-am ps ps-am \
- tags tags-recursive uninstall uninstall-am uninstall-info-am
+ maintainer-clean maintainer-clean-generic mostlyclean \
+ mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
+ tags tags-recursive uninstall uninstall-am
+
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
diff --git a/AMDiS/src/DOFVector.h b/AMDiS/src/DOFVector.h
index bbb2b0ad5094dc89ac4cdc5f6c3aa3bb72509b4d..b4218b925130846cf05200510a02757071603a82 100644
--- a/AMDiS/src/DOFVector.h
+++ b/AMDiS/src/DOFVector.h
@@ -207,6 +207,11 @@ namespace AMDiS {
return name;
}
+ inline void setName(std::string n)
+ {
+ name=n;
+ }
+
inline BoundaryManager* getBoundaryManager() const
{
return boundaryManager;
diff --git a/AMDiS/src/FixVec.h b/AMDiS/src/FixVec.h
index 16e100257285c63ad5bafba5b1c05fde776459a8..4836790a4fa40a4aba9e82bdc8693e1801aee11b 100644
--- a/AMDiS/src/FixVec.h
+++ b/AMDiS/src/FixVec.h
@@ -529,6 +529,10 @@ namespace AMDiS {
return result;
}
+ inline WorldVector<double> operator*(double d, const WorldVector<double>& v)
+ {
+ return v*d;
+ }
inline WorldVector<double> operator+(const WorldVector<double>& v1,
const WorldVector<double>& v2)
{
diff --git a/AMDiS/src/ProblemImplicit.cc b/AMDiS/src/ProblemImplicit.cc
index 580b411661ef8f4ce81a10c014144ee7a001edfe..987184d61b9dc53673901d29ea716eecfeed5c1e 100644
--- a/AMDiS/src/ProblemImplicit.cc
+++ b/AMDiS/src/ProblemImplicit.cc
@@ -115,12 +115,12 @@ namespace AMDiS {
inStream.close();
//create the fespace with the correct admin
- createFESpace();
+ createFeSpace();
- r = new DOFVector< double >(getFESpace(), "r");
- phi1 = new DOFVector<double>(getFESpace(), "phi1");
- phi2 = new DOFVector<double>(getFESpace(), "phi2");
- levelSet = new DOFVector< double >(getFESpace(), "levelSet");
+ r = new DOFVector< double >(getFeSpace(), "r");
+ phi1 = new DOFVector<double>(getFeSpace(), "phi1");
+ phi2 = new DOFVector<double>(getFeSpace(), "phi2");
+ levelSet = new DOFVector< double >(getFeSpace(), "levelSet");
inStream.open(dofFilename.c_str());
switch (serType) {
case 0:
@@ -188,11 +188,11 @@ namespace AMDiS {
meshes[p]->deserialize(inStream);
inStream.close();
//create the fespace with the correct admin
- createFESpace(NULL);
- r[p] = new DOFVector< double >(getFESpace(p), "r");
- phi1[p] = new DOFVector<double>(getFESpace(p), "phi1");
- phi2[p] = new DOFVector<double>(getFESpace(p), "phi2");
- levelSet[p] = new DOFVector< double >(getFESpace(p), "levelSet");
+ createFeSpace(NULL);
+ r[p] = new DOFVector< double >(getFeSpace(p), "r");
+ phi1[p] = new DOFVector<double>(getFeSpace(p), "phi1");
+ phi2[p] = new DOFVector<double>(getFeSpace(p), "phi2");
+ levelSet[p] = new DOFVector< double >(getFeSpace(p), "levelSet");
inStream.open(dofFilename.c_str());
switch (serType)
{
diff --git a/AMDiS/src/ProblemInterpolScal.cc b/AMDiS/src/ProblemInterpolScal.cc
index e22122cf19918dc0c279019434b7b2fc53db3de1..56a7da5d182809f9592ea8a85d60d76dc4941edd 100644
--- a/AMDiS/src/ProblemInterpolScal.cc
+++ b/AMDiS/src/ProblemInterpolScal.cc
@@ -15,8 +15,9 @@ namespace AMDiS {
grdInterpolFct(grdFct)
{
Flag adoptFlag = INIT_SYSTEM | INIT_MESH | INIT_FE_SPACE;
- Flag initFlag = INIT_ALL & ~adoptFlag & ~INIT_SOLVER & ~INIT_ESTIMATOR;
-
+ Flag initFlag = INIT_ALL & ~adoptFlag & ~INIT_SOLVER & ~INIT_ESTIMATOR & ~CREATE_MESH & ~INIT_FILEWRITER;
+ if(initFlag.isSet(CREATE_MESH))
+ WARNING("CREATE_MESH is set\n");
initialize(initFlag, spaceProblem, adoptFlag);
}
diff --git a/AMDiS/src/ProblemVec.cc b/AMDiS/src/ProblemVec.cc
index 296d0bc36b6f4a226afdbdb154781246e6353cc3..f76dafcaa79cf6dca4eb31b08bdadb73c0fe9c0f 100644
--- a/AMDiS/src/ProblemVec.cc
+++ b/AMDiS/src/ProblemVec.cc
@@ -656,7 +656,6 @@ namespace AMDiS {
traverseInfo.updateStatus();
-
// Used to calculate the overall number of non zero entries.
int nnz = 0;
@@ -1119,10 +1118,16 @@ namespace AMDiS {
it != op->getAuxFeSpaces().end(); ++it) {
if ((*it)->getMesh() != componentSpaces[i]->getMesh() ||
(*it)->getMesh() != componentSpaces[j]->getMesh()) {
+ // std::cout<<"auxFE "<<k<<" in position ("<<i<<","<<j<<") has different mesh\n"<<std::endl;
op->setNeedDualTraverse(true);
break;
}
}
+ /* std::cout<<"after adding MatOp to ("<<i<<","<<j<<"):\n";
+ traverseInfo.updateStatus();
+ for(int i2=0;i2<nComponents;i2++)
+ for(int j2=0;j2<nComponents;j2++)
+ std::cout<<"traverseInfo.getStatus("<<i2<<","<<j2<<"):"<<traverseInfo.getStatus(i2,j2)<<std::endl;*/
}
diff --git a/AMDiS/src/SubAssembler.cc b/AMDiS/src/SubAssembler.cc
index 165ed2ed4be597bf16aba36d05b9d88c180d8aa6..ad6a82dad73122a9f034d5dfb2cad04a3a66b76b 100644
--- a/AMDiS/src/SubAssembler.cc
+++ b/AMDiS/src/SubAssembler.cc
@@ -229,9 +229,17 @@ namespace AMDiS {
WorldVector<double> *values = &(gradientsAtQPs[vec]->values[0]);
gradientsAtQPs[vec]->valid = true;
-
+ bool hasNan=false;
+ for(int i=0;i<localQuad->getNumPoints() && !hasNan;i++)
+ for(int j=0;j<Global::getGeo(WORLD) && !hasNan ;j++)
+ hasNan=isnan((values[i])[j]);
+ TEST_EXIT_DBG(!hasNan)("gradient contains a nan\n");
vec->getGrdAtQPs(smallElInfo, largeElInfo, localQuad, NULL, values);
-
+ hasNan=false;
+ for(int i=0;i<localQuad->getNumPoints() && !hasNan;i++)
+ for(int j=0;j<Global::getGeo(WORLD) && !hasNan ;j++)
+ hasNan=isnan((values[i])[j]);
+ TEST_EXIT_DBG(!hasNan)("gradient contains a nan\n");
return values;
}
diff --git a/AMDiS/src/ZeroOrderAssembler.cc b/AMDiS/src/ZeroOrderAssembler.cc
index 621b69403c202276352129bf4976374dbe939391..351679d6fb51a12d22d72e54ba662b4ac1bfef67 100644
--- a/AMDiS/src/ZeroOrderAssembler.cc
+++ b/AMDiS/src/ZeroOrderAssembler.cc
@@ -98,7 +98,11 @@ namespace AMDiS {
std::vector<OperatorTerm*>::iterator termIt;
for (termIt = terms[myRank].begin(); termIt != terms[myRank].end(); ++termIt)
(static_cast<ZeroOrderTerm*>((*termIt)))->getC(elInfo, nPoints, c);
-
+
+ bool hasNan=false;
+ for(int i=0;i<nPoints && !hasNan ;i++)
+ hasNan=isnan(c[i]);
+ TEST_EXIT(!hasNan)("there is a nan in at least one position\n");
if (symmetric) {
TEST_EXIT_DBG(nCol == nRow)("nCol != nRow, but symmetric assembling!\n");
@@ -134,6 +138,11 @@ namespace AMDiS {
}
}
}
+ hasNan=false;
+ for(unsigned i=0;i<num_rows(mat) && !hasNan;i++)
+ for(unsigned j=0;j<num_cols(mat) && !hasNan; j++)
+ hasNan=isnan(mat[i][j]);
+ TEST_EXIT(!hasNan)("calculated an element matrix containing a nan\n");
}