diff --git a/AMDiS/libtool b/AMDiS/libtool
index 486eabd3eefb59bce7cb3fc38a32f6c54ef0e385..e96f67065e881c5fbc2155783211a810082e9175 100755
--- a/AMDiS/libtool
+++ b/AMDiS/libtool
@@ -30,10 +30,10 @@
# the same distribution terms that you use for the rest of that program.
# A sed program that does not truncate output.
-SED="/usr/bin/sed"
+SED="/bin/sed"
# Sed that helps us avoid accidentally triggering echo(1) options like -n.
-Xsed="/usr/bin/sed -e 1s/^X//"
+Xsed="/bin/sed -e 1s/^X//"
# The HP-UX ksh and POSIX shell print the target directory to stdout
# if CDPATH is set.
@@ -44,7 +44,7 @@ available_tags=" CXX F77"
# ### BEGIN LIBTOOL CONFIG
-# Libtool was configured on host deimos103:
+# Libtool was configured on host NWRW15:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
@@ -66,12 +66,12 @@ fast_install=yes
# The host system.
host_alias=
-host=x86_64-unknown-linux-gnu
+host=i686-pc-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
-build=x86_64-unknown-linux-gnu
+build=i686-pc-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
@@ -82,22 +82,25 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
-LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+LTCC="gcc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
-CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+CC="gcc"
# Is the compiler the GNU C compiler?
with_gcc=yes
+gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
+gcc_ver=`gcc -dumpversion`
+
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
-LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
+LD="/usr/bin/ld"
# Whether we need hard or soft links.
LN_S="ln -s"
@@ -171,7 +174,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
-link_static_flag=""
+link_static_flag="-static"
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
@@ -229,11 +232,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
-predep_objects=""
+predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place after the objects being linked to create a
# shared library.
-postdep_objects=""
+postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place before the objects being linked to create a
# shared library.
@@ -245,7 +248,7 @@ postdeps=""
# The library search path used internally by the compiler when linking
# a shared library.
-compiler_lib_search_path=""
+compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
@@ -325,10 +328,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
-sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
+sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
@@ -6760,7 +6763,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
# End:
# ### BEGIN LIBTOOL TAG CONFIG: CXX
-# Libtool was configured on host deimos103:
+# Libtool was configured on host NWRW15:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
@@ -6782,12 +6785,12 @@ fast_install=yes
# The host system.
host_alias=
-host=x86_64-unknown-linux-gnu
+host=i686-pc-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
-build=x86_64-unknown-linux-gnu
+build=i686-pc-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
@@ -6798,22 +6801,25 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
-LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+LTCC="gcc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
-CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpiCC"
+CC="g++"
# Is the compiler the GNU C compiler?
with_gcc=yes
+gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
+gcc_ver=`gcc -dumpversion`
+
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
-LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
+LD="/usr/bin/ld"
# Whether we need hard or soft links.
LN_S="ln -s"
@@ -6887,7 +6893,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
-link_static_flag=""
+link_static_flag="-static"
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
@@ -6942,11 +6948,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
-predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o"
+predep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbeginS.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place after the objects being linked to create a
# shared library.
-postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o"
+postdep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/crtendS.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place before the objects being linked to create a
# shared library.
@@ -6954,11 +6960,11 @@ predeps=""
# Dependencies to place after the objects being linked to create a
# shared library.
-postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
+postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s"
# The library search path used internally by the compiler when linking
# a shared library.
-compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
+compiler_lib_search_path=`echo "-L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.." | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
@@ -7038,10 +7044,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
-sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
+sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
@@ -7065,7 +7071,7 @@ include_expsyms=""
# ### BEGIN LIBTOOL TAG CONFIG: F77
-# Libtool was configured on host deimos103:
+# Libtool was configured on host NWRW15:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
@@ -7087,12 +7093,12 @@ fast_install=yes
# The host system.
host_alias=
-host=x86_64-unknown-linux-gnu
+host=i686-pc-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
-build=x86_64-unknown-linux-gnu
+build=i686-pc-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
@@ -7103,7 +7109,7 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
-LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+LTCC="gcc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
@@ -7112,13 +7118,16 @@ LTCFLAGS="-g -O2"
CC="g77"
# Is the compiler the GNU C compiler?
-with_gcc=
+with_gcc=yes
+
+gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
+gcc_ver=`gcc -dumpversion`
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
-LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
+LD="/usr/bin/ld"
# Whether we need hard or soft links.
LN_S="ln -s"
@@ -7250,11 +7259,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
-predep_objects=""
+predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place after the objects being linked to create a
# shared library.
-postdep_objects=""
+postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place before the objects being linked to create a
# shared library.
@@ -7266,7 +7275,7 @@ postdeps=""
# The library search path used internally by the compiler when linking
# a shared library.
-compiler_lib_search_path=""
+compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
@@ -7346,10 +7355,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
-sys_lib_search_path_spec=" /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/"
+sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../ /lib/i386-redhat-linux/3.4.6/ /lib/ /usr/lib/i386-redhat-linux/3.4.6/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
diff --git a/AMDiS/src/RobinBC.cc b/AMDiS/src/RobinBC.cc
index b4c7cab85eaf2726d8d32162db401194bfeaec61..def19d38f562cc26d2255f903ed6aedf142024df 100644
--- a/AMDiS/src/RobinBC.cc
+++ b/AMDiS/src/RobinBC.cc
@@ -17,54 +17,46 @@ namespace AMDiS {
: BoundaryCondition(type, rowFESpace_, colFESpace_),
neumannOperators(NULL),
robinOperators(NULL)
- //matrix(dofMatrix)
{
- int i, k, dim = rowFESpace->getMesh()->getDim();
+ int dim = rowFESpace->getMesh()->getDim();
// create barycentric coords for each vertex of each side
const Element *refElement = Global::getReferenceElement(dim);
-
coords = new VectorOfFixVecs<DimVec<double> >*[dim+1];
// for all element sides
- for(i=0; i < dim+1; i++) {
- coords[i] =
- new VectorOfFixVecs<DimVec<double> >(dim,
- dim,
- DEFAULT_VALUE,
- DimVec<double>(dim,
- DEFAULT_VALUE,
- 0.0));
+ for (int i = 0; i < dim+1; i++) {
+ coords[i] = new VectorOfFixVecs<DimVec<double> >(dim, dim, DEFAULT_VALUE,
+ DimVec<double>(dim,
+ DEFAULT_VALUE,
+ 0.0));
// for each vertex of the side
- for(k=0; k < dim; k++) {
- int index =
- refElement->getVertexOfPosition(INDEX_OF_DIM(dim-1, dim), i, k);
+ for (int k = 0; k < dim; k++) {
+ int index = refElement->getVertexOfPosition(INDEX_OF_DIM(dim - 1, dim), i, k);
(*coords[i])[k][index] = 1.0;
}
}
- if(j) {
+ if (j) {
Operator *jOp = new Operator(Operator::VECTOR_OPERATOR, rowFESpace);
jOp->addZeroOrderTerm(new CoordsAtQP_ZOT(j));
neumannOperators = new DimVec<SurfaceOperator*>(dim, NO_INIT);
- for(i=0; i < dim+1; i++) {
+ for (int i = 0; i < dim + 1; i++)
(*neumannOperators)[i] = new SurfaceOperator(jOp, *coords[i]);
- }
delete jOp;
}
- if(alpha) {
- Operator *alphaOp = new Operator(Operator::MATRIX_OPERATOR,
- rowFESpace, colFESpace);
+ if (alpha) {
+ Operator *alphaOp =
+ new Operator(Operator::MATRIX_OPERATOR, rowFESpace, colFESpace);
alphaOp->addZeroOrderTerm(new CoordsAtQP_ZOT(alpha));
robinOperators = new DimVec<SurfaceOperator*>(dim, NO_INIT);
- for(i=0; i < dim + 1; i++) {
+ for (int i = 0; i < dim + 1; i++)
(*robinOperators)[i] = new SurfaceOperator(alphaOp, *coords[i]);
- }
-
+
delete alphaOp;
}
}
@@ -77,54 +69,46 @@ namespace AMDiS {
: BoundaryCondition(type, rowFESpace_, colFESpace_),
neumannOperators(NULL),
robinOperators(NULL)
- //matrix(dofMatrix)
{
- int i, k, dim = rowFESpace->getMesh()->getDim();
+ int dim = rowFESpace->getMesh()->getDim();
// create barycentric coords for each vertex of each side
const Element *refElement = Global::getReferenceElement(dim);
-
coords = new VectorOfFixVecs<DimVec<double> >*[dim+1];
// for all element sides
- for(i=0; i < dim+1; i++) {
- coords[i] =
- new VectorOfFixVecs<DimVec<double> >(dim,
- dim,
- DEFAULT_VALUE,
- DimVec<double>(dim,
- DEFAULT_VALUE,
- 0.0)
- );
+ for (int i = 0; i < dim + 1; i++) {
+ coords[i] = new VectorOfFixVecs<DimVec<double> >(dim, dim, DEFAULT_VALUE,
+ DimVec<double>(dim,
+ DEFAULT_VALUE,
+ 0.0)
+ );
// for each vertex of the side
- for(k=0; k < dim; k++) {
- int index =
- refElement->getVertexOfPosition(INDEX_OF_DIM(dim-1, dim), i, k);
+ for (int k = 0; k < dim; k++) {
+ int index = refElement->getVertexOfPosition(INDEX_OF_DIM(dim - 1, dim), i, k);
(*coords[i])[k][index] = 1.0;
}
}
- if(j) {
+ if (j) {
Operator *jOp = new Operator(Operator::VECTOR_OPERATOR, rowFESpace);
jOp->addZeroOrderTerm(new VecAtQP_ZOT(j, NULL));
neumannOperators = new DimVec<SurfaceOperator*>(dim, NO_INIT);
- for(i=0; i < dim+1; i++) {
- (*neumannOperators)[i] = new SurfaceOperator(jOp, *coords[i]);
- }
+ for (int i=0; i < dim+1; i++)
+ (*neumannOperators)[i] = new SurfaceOperator(jOp, *coords[i]);
delete jOp;
}
- if(alpha) {
- Operator *alphaOp = new Operator(Operator::MATRIX_OPERATOR,
- rowFESpace, colFESpace);
+ if (alpha) {
+ Operator *alphaOp =
+ new Operator(Operator::MATRIX_OPERATOR, rowFESpace, colFESpace);
alphaOp->addZeroOrderTerm(new VecAtQP_ZOT(alpha, NULL));
robinOperators = new DimVec<SurfaceOperator*>(dim, NO_INIT);
- for(i=0; i < dim + 1; i++) {
- (*robinOperators)[i] = new SurfaceOperator(alphaOp, *coords[i]);
- }
+ for (int i = 0; i < dim + 1; i++)
+ (*robinOperators)[i] = new SurfaceOperator(alphaOp, *coords[i]);
delete alphaOp;
}
@@ -137,28 +121,22 @@ namespace AMDiS {
: BoundaryCondition(type, rowFESpace_, colFESpace_),
neumannOperators(NULL),
robinOperators(NULL)
- //matrix(dofMatrix)
{
- int i, k, dim = rowFESpace->getMesh()->getDim();
+ int dim = rowFESpace->getMesh()->getDim();
// create barycentric coords for each vertex of each side
const Element *refElement = Global::getReferenceElement(dim);
-
coords = new VectorOfFixVecs<DimVec<double> >*[dim+1];
// for all element sides
- for(i=0; i < dim+1; i++) {
- coords[i] =
- new VectorOfFixVecs<DimVec<double> >(dim,
- dim,
- DEFAULT_VALUE,
- DimVec<double>(dim,
- DEFAULT_VALUE,
- 0.0));
+ for (int i = 0; i < dim + 1; i++) {
+ coords[i] = new VectorOfFixVecs<DimVec<double> >(dim, dim, DEFAULT_VALUE,
+ DimVec<double>(dim,
+ DEFAULT_VALUE,
+ 0.0));
// for each vertex of the side
- for(k=0; k < dim; k++) {
- int index =
- refElement->getVertexOfPosition(INDEX_OF_DIM(dim-1, dim), i, k);
+ for (int k = 0; k < dim; k++) {
+ int index = refElement->getVertexOfPosition(INDEX_OF_DIM(dim - 1, dim), i, k);
(*coords[i])[k][index] = 1.0;
}
}
@@ -166,10 +144,10 @@ namespace AMDiS {
neumannOperators = new DimVec<SurfaceOperator*>(dim, NO_INIT);
robinOperators = new DimVec<SurfaceOperator*>(dim, NO_INIT);
- for(i=0; i < dim + 1; i++) {
- if(jOp)
+ for (int i = 0; i < dim + 1; i++) {
+ if (jOp)
(*neumannOperators)[i] = new SurfaceOperator(jOp, *coords[i]);
- if(alphaOp)
+ if (alphaOp)
(*robinOperators)[i] = new SurfaceOperator(alphaOp, *coords[i]);
}
}
@@ -200,14 +178,12 @@ namespace AMDiS {
const BoundaryType* localBound,
int nBasFcts)
{
- int dim = elInfo->getMesh()->getDim();
-
if (robinOperators) {
- for (int i = 0; i < dim + 1; i++) {
- if (elInfo->getBoundary(i) == boundaryType) {
+ int dim = elInfo->getMesh()->getDim();
+
+ for (int i = 0; i < dim + 1; i++)
+ if (elInfo->getBoundary(i) == boundaryType)
matrix->assemble(-1.0, elInfo, localBound, (*robinOperators)[i]);
- }
- }
}
}
@@ -216,24 +192,18 @@ namespace AMDiS {
const DOFVectorBase<double> *dv)
{
FUNCNAME("RobinBC::fillBoundaryCondition()");
- TEST_EXIT(matrix->getRowFESpace() == rowFESpace)
- ("invalid row fe space\n");
- TEST_EXIT(matrix->getColFESpace() == colFESpace)
- ("invalid col fe space\n");
+ TEST_EXIT(matrix->getRowFESpace() == rowFESpace)("invalid row fe space\n");
+ TEST_EXIT(matrix->getColFESpace() == colFESpace)("invalid col fe space\n");
int dim = elInfo->getMesh()->getDim();
int iq;
DimVec<double> lambda(dim, NO_INIT);
double n_A_grdUh, val = 0.0;
WorldVector<double> normal;
-
const DimVec<WorldVector<double> > &Lambda = elInfo->getGrdLambda();
double det = elInfo->getDet();
-
int numPoints;
-
bool neumannQuad = false;
-
const BasisFunction *basFcts = dv->getFESpace()->getBasisFcts();
TEST_EXIT(basFcts == rowFESpace->getBasisFcts())("invalid basFcts\n");
@@ -245,14 +215,14 @@ namespace AMDiS {
TEST_EXIT(neumannOperators || robinOperators)
("neither neumann nor robin operators set!\n");
- if(!robinOperators)
+ if (!robinOperators) {
neumannQuad = true;
- else {
- if(neumannOperators) {
- if((*neumannOperators)[0]->getAssembler(omp_get_thread_num())->
- getZeroOrderAssembler()->getQuadrature()->getNumPoints() >
- (*robinOperators)[0]->getAssembler(omp_get_thread_num())->
- getZeroOrderAssembler()->getQuadrature()->getNumPoints())
+ } else {
+ if (neumannOperators) {
+ if ((*neumannOperators)[0]->getAssembler(omp_get_thread_num())->
+ getZeroOrderAssembler()->getQuadrature()->getNumPoints() >
+ (*robinOperators)[0]->getAssembler(omp_get_thread_num())->
+ getZeroOrderAssembler()->getQuadrature()->getNumPoints())
{
neumannQuad = true;
}
@@ -260,15 +230,14 @@ namespace AMDiS {
}
Quadrature *quadrature = NULL;
-
int face;
std::vector<Operator*>::iterator op;
- for(op=matrix->getOperatorsBegin(); op != matrix->getOperatorsEnd(); ++op) {
+ for (op = matrix->getOperatorsBegin(); op != matrix->getOperatorsEnd(); ++op) {
(*op)->getAssembler(omp_get_thread_num())->initElement(elInfo);
}
- for(face = 0; face < dim+1; face++) {
+ for (face = 0; face < dim + 1; face++) {
elInfo->getNormal(face, normal);
@@ -281,12 +250,10 @@ namespace AMDiS {
numPoints = quadrature->getNumPoints();
- if(elInfo->getBoundary(face) == boundaryType) {
-
+ if (elInfo->getBoundary(face) == boundaryType) {
(*neumannOperators)[face]->getAssembler(omp_get_thread_num())->getZeroOrderAssembler()->
initElement(elInfo);
- //const double *uhAtQp = quadrature->uhAtQp(basFcts, uhEl, NULL);
const double *uhAtQp = dv->getVecAtQPs(elInfo,
quadrature,
NULL,
@@ -294,15 +261,14 @@ namespace AMDiS {
std::vector<double> f(numPoints, 0.0);
- if(robinOperators) {
+ if (robinOperators)
(*robinOperators)[face]->evalZeroOrder(numPoints,
uhAtQp,
NULL,
NULL,
&f[0],
1.0);
- }
-
+
WorldVector<double> *grdUh = new WorldVector<double>[numPoints];
WorldVector<double> *A_grdUh = new WorldVector<double>[numPoints];
@@ -312,7 +278,7 @@ namespace AMDiS {
basFcts->evalGrdUh(lambda, Lambda, uhEl, &grdUh[iq]);
}
- for(op=matrix->getOperatorsBegin(); op != matrix->getOperatorsEnd(); ++op) {
+ for (op = matrix->getOperatorsBegin(); op != matrix->getOperatorsEnd(); ++op) {
(*op)->weakEvalSecondOrder(numPoints,
grdUh,
A_grdUh);
diff --git a/AMDiS/src/SurfaceOperator.h b/AMDiS/src/SurfaceOperator.h
index f341ea4c31d5c06eb9939ab52db8d971a12937d3..147555c6cb967ae0f7e0e4b7f776bb05d64232b9 100644
--- a/AMDiS/src/SurfaceOperator.h
+++ b/AMDiS/src/SurfaceOperator.h
@@ -64,30 +64,26 @@ namespace AMDiS {
// create surface quadratures
if (secondOrder[myRank].size() > 0) {
degree = getQuadratureDegree(2);
- // quad2 = SurfaceQuadrature::provideSurfaceQuadrature(dim, degree, coords);
- quad2 = new SurfaceQuadrature(Quadrature::provideQuadrature(dim - 1, degree),
- coords);
+ quad2 =
+ new SurfaceQuadrature(Quadrature::provideQuadrature(dim - 1, degree), coords);
}
if (firstOrderGrdPsi[myRank].size() > 0) {
degree = getQuadratureDegree(1, GRD_PSI);
- quad1GrdPsi = new SurfaceQuadrature(Quadrature::provideQuadrature(dim - 1, degree),
- coords);
- //SurfaceQuadrature::provideSurfaceQuadrature(dim, degree, coords);
+ quad1GrdPsi =
+ new SurfaceQuadrature(Quadrature::provideQuadrature(dim - 1, degree), coords);
}
if (firstOrderGrdPhi[myRank].size() > 0) {
degree = getQuadratureDegree(1, GRD_PHI);
- quad1GrdPhi = new SurfaceQuadrature(Quadrature::provideQuadrature(dim - 1, degree),
- coords);
- //SurfaceQuadrature::provideSurfaceQuadrature(dim, degree, coords);
+ quad1GrdPhi =
+ new SurfaceQuadrature(Quadrature::provideQuadrature(dim - 1, degree), coords);
}
if (zeroOrder[myRank].size() > 0) {
degree = getQuadratureDegree(0);
- quad0 = new SurfaceQuadrature(Quadrature::provideQuadrature(dim - 1, degree),
- coords);
- //SurfaceQuadrature::provideSurfaceQuadrature(dim, degree, coords);
+ quad0 =
+ new SurfaceQuadrature(Quadrature::provideQuadrature(dim - 1, degree), coords);
}
// initialize assembler with surface quadratures
diff --git a/AMDiS/src/SurfaceQuadrature.cc b/AMDiS/src/SurfaceQuadrature.cc
index 4b78d2cab0b68dd06ee7e6f6c97e81d1e73410c6..2b1990d3d321c03b337640c3495c16f5d717deda 100644
--- a/AMDiS/src/SurfaceQuadrature.cc
+++ b/AMDiS/src/SurfaceQuadrature.cc
@@ -7,12 +7,12 @@ namespace AMDiS {
SurfaceQuadrature::SurfaceQuadrature(Quadrature *q,
VectorOfFixVecs<DimVec<double> > &c)
- : Quadrature((quad->getName() + " surface").c_str(),
- quad->getDegree(),
- quad->getDim() + 1,
- quad->getNumPoints(),
+ : Quadrature((q->getName() + " surface").c_str(),
+ q->getDegree(),
+ q->getDim() + 1,
+ q->getNumPoints(),
NULL,
- quad->getWeight()),
+ q->getWeight()),
quad(q),
coords(c)
{