From dd460d9e1312e3f518414c62fe587a8f3f877953 Mon Sep 17 00:00:00 2001
From: Thomas Witkowski <thomas.witkowski@gmx.de>
Date: Fri, 11 Dec 2009 16:29:09 +0000
Subject: [PATCH] Added marmot support for AMDiS compilation.

---
 AMDiS/Makefile.in                     |   1 -
 AMDiS/aclocal.m4                      |  34 +---
 AMDiS/bin/Makefile.in                 |   1 -
 AMDiS/configure                       | 230 +++++++++-----------------
 AMDiS/configure.ac                    |  14 +-
 AMDiS/libtool                         |  81 ++++-----
 AMDiS/other/include/Makefile_AMDiS.mk |  13 +-
 AMDiS/src/DOFVector.h                 |   5 +
 AMDiS/src/ParallelDomainBase.cc       | 129 ++++++++-------
 AMDiS/src/ParallelDomainVec.cc        |  18 +-
 AMDiS/src/ParallelDomainVec.h         |   7 +-
 11 files changed, 223 insertions(+), 310 deletions(-)

diff --git a/AMDiS/Makefile.in b/AMDiS/Makefile.in
index e7566807..e9c5bf1a 100644
--- a/AMDiS/Makefile.in
+++ b/AMDiS/Makefile.in
@@ -140,7 +140,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PETSC_DIR = @PETSC_DIR@
 RANLIB = @RANLIB@
-SED = @SED@
 SET_MAKE = @SET_MAKE@
 SHELL = @SHELL@
 STRIP = @STRIP@
diff --git a/AMDiS/aclocal.m4 b/AMDiS/aclocal.m4
index 6cec4be8..c6b83dae 100644
--- a/AMDiS/aclocal.m4
+++ b/AMDiS/aclocal.m4
@@ -1578,27 +1578,10 @@ linux*)
   # before this can be enabled.
   hardcode_into_libs=yes
 
-  # find out which ABI we are using
-  libsuff=
-  case "$host_cpu" in
-  x86_64*|s390x*|powerpc64*)
-    echo '[#]line __oline__ "configure"' > conftest.$ac_ext
-    if AC_TRY_EVAL(ac_compile); then
-      case `/usr/bin/file conftest.$ac_objext` in
-      *64-bit*)
-        libsuff=64
-        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
-        ;;
-      esac
-    fi
-    rm -rf conftest*
-    ;;
-  esac
-
   # Append ld.so.conf contents to the search path
   if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
   fi
 
   # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -4305,9 +4288,6 @@ CC=$lt_[]_LT_AC_TAGVAR(compiler, $1)
 # Is the compiler the GNU C compiler?
 with_gcc=$_LT_AC_TAGVAR(GCC, $1)
 
-gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
-gcc_ver=\`gcc -dumpversion\`
-
 # An ERE matcher.
 EGREP=$lt_EGREP
 
@@ -4441,11 +4421,11 @@ striplib=$lt_striplib
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=\`echo $lt_[]_LT_AC_TAGVAR(predep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+predep_objects=$lt_[]_LT_AC_TAGVAR(predep_objects, $1)
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=\`echo $lt_[]_LT_AC_TAGVAR(postdep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+postdep_objects=$lt_[]_LT_AC_TAGVAR(postdep_objects, $1)
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -4457,7 +4437,7 @@ postdeps=$lt_[]_LT_AC_TAGVAR(postdeps, $1)
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=\`echo $lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+compiler_lib_search_path=$lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1)
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -4537,7 +4517,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$_LT_AC_TAGVAR(link_all_deplibs, $1)
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
 
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -6373,7 +6353,6 @@ do
     done
   done
 done
-IFS=$as_save_IFS
 lt_ac_max=0
 lt_ac_count=0
 # Add /usr/xpg4/bin/sed as it is typically found on Solaris
@@ -6406,7 +6385,6 @@ for lt_ac_sed in $lt_ac_sed_list /usr/xpg4/bin/sed; do
 done
 ])
 SED=$lt_cv_path_SED
-AC_SUBST([SED])
 AC_MSG_RESULT([$SED])
 ])
 
diff --git a/AMDiS/bin/Makefile.in b/AMDiS/bin/Makefile.in
index 1ef135b2..c2b7ea86 100644
--- a/AMDiS/bin/Makefile.in
+++ b/AMDiS/bin/Makefile.in
@@ -394,7 +394,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PETSC_DIR = @PETSC_DIR@
 RANLIB = @RANLIB@
-SED = @SED@
 SET_MAKE = @SET_MAKE@
 SHELL = @SHELL@
 STRIP = @STRIP@
diff --git a/AMDiS/configure b/AMDiS/configure
index 4196f21b..b4b86c5b 100755
--- a/AMDiS/configure
+++ b/AMDiS/configure
@@ -462,7 +462,7 @@ ac_includes_default="\
 # include <unistd.h>
 #endif"
 
-ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CYGPATH_W PACKAGE VERSION ACLOCAL AUTOCONF AUTOMAKE AUTOHEADER MAKEINFO install_sh STRIP ac_ct_STRIP INSTALL_STRIP_PROGRAM mkdir_p AWK SET_MAKE am__leading_dot AMTAR am__tar am__untar MAINTAINER_MODE_TRUE MAINTAINER_MODE_FALSE MAINT AMDIS_DEBUG_TRUE AMDIS_DEBUG_FALSE CXX CC AMDIS_INTEL_TRUE AMDIS_INTEL_FALSE AMDIS_OPENMP_TRUE AMDIS_OPENMP_FALSE OPENMP_FLAG MPI_DIR PETSC_DIR USE_PARALLEL_AMDIS_TRUE USE_PARALLEL_AMDIS_FALSE USE_PARALLEL_DOMAIN_AMDIS_TRUE USE_PARALLEL_DOMAIN_AMDIS_FALSE ENABLE_UMFPACK_TRUE ENABLE_UMFPACK_FALSE ENABLE_MKL_TRUE ENABLE_MKL_FALSE DUNE_DIR ENABLE_DUNE_TRUE ENABLE_DUNE_FALSE ENABLE_BOOST_TRUE ENABLE_BOOST_FALSE CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT DEPDIR am__include am__quote AMDEP_TRUE AMDEP_FALSE AMDEPBACKSLASH CCDEPMODE am__fastdepCC_TRUE am__fastdepCC_FALSE CXXFLAGS ac_ct_CXX CXXDEPMODE am__fastdepCXX_TRUE am__fastdepCXX_FALSE build build_cpu build_vendor build_os host host_cpu host_vendor host_os SED EGREP LN_S ECHO AR ac_ct_AR RANLIB ac_ct_RANLIB CPP CXXCPP F77 FFLAGS ac_ct_F77 LIBTOOL LIBOBJS LTLIBOBJS'
+ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CYGPATH_W PACKAGE VERSION ACLOCAL AUTOCONF AUTOMAKE AUTOHEADER MAKEINFO install_sh STRIP ac_ct_STRIP INSTALL_STRIP_PROGRAM mkdir_p AWK SET_MAKE am__leading_dot AMTAR am__tar am__untar MAINTAINER_MODE_TRUE MAINTAINER_MODE_FALSE MAINT AMDIS_DEBUG_TRUE AMDIS_DEBUG_FALSE CXX CC AMDIS_INTEL_TRUE AMDIS_INTEL_FALSE AMDIS_OPENMP_TRUE AMDIS_OPENMP_FALSE OPENMP_FLAG MPI_DIR PETSC_DIR USE_PARALLEL_AMDIS_TRUE USE_PARALLEL_AMDIS_FALSE USE_PARALLEL_DOMAIN_AMDIS_TRUE USE_PARALLEL_DOMAIN_AMDIS_FALSE ENABLE_UMFPACK_TRUE ENABLE_UMFPACK_FALSE ENABLE_MKL_TRUE ENABLE_MKL_FALSE DUNE_DIR ENABLE_DUNE_TRUE ENABLE_DUNE_FALSE ENABLE_BOOST_TRUE ENABLE_BOOST_FALSE CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT DEPDIR am__include am__quote AMDEP_TRUE AMDEP_FALSE AMDEPBACKSLASH CCDEPMODE am__fastdepCC_TRUE am__fastdepCC_FALSE CXXFLAGS ac_ct_CXX CXXDEPMODE am__fastdepCXX_TRUE am__fastdepCXX_FALSE build build_cpu build_vendor build_os host host_cpu host_vendor host_os EGREP LN_S ECHO AR ac_ct_AR RANLIB ac_ct_RANLIB CPP CXXCPP F77 FFLAGS ac_ct_F77 LIBTOOL LIBOBJS LTLIBOBJS'
 ac_subst_files=''
 
 # Initialize some variables set by options.
@@ -1027,6 +1027,7 @@ Optional Features:
   --enable-debug    Turn on debugging
   --enable-intel    Turn on support for the Intel compiler
   --enable-openmp    Turn on support for the Intel compiler
+  --enable-marmot    Use marmot compiler for mpi debugging.
   --enable-parmetis   Compile with the ParMetis library
   --enable-parallel-domain  Parallelization with classical domain decomposition
   --enable-umfpack  Compile with the UMFPACK direct solver library
@@ -2079,6 +2080,26 @@ if test $mpidir != no ; then
 
 fi
 
+# Check whether --enable-marmot or --disable-marmot was given.
+if test "${enable_marmot+set}" = set; then
+  enableval="$enable_marmot"
+  case "${enableval}" in
+    yes) marmot=true ;;
+    no)  marmot=false ;;
+    *) { { echo "$as_me:$LINENO: error: bad value ${enableval} for --enable-marmot" >&5
+echo "$as_me: error: bad value ${enableval} for --enable-marmot" >&2;}
+   { (exit 1); exit 1; }; } ;;
+  esac
+else
+  marmot=false
+fi;
+if test $marmot != false ; then
+  CXX=marmotcxx
+
+  CC=marmotcc
+
+fi
+
 
 # Check whether --with-petsc or --without-petsc was given.
 if test "${with_petsc+set}" = set; then
@@ -3946,7 +3967,6 @@ do
     done
   done
 done
-IFS=$as_save_IFS
 lt_ac_max=0
 lt_ac_count=0
 # Add /usr/xpg4/bin/sed as it is typically found on Solaris
@@ -3981,7 +4001,6 @@ done
 fi
 
 SED=$lt_cv_path_SED
-
 echo "$as_me:$LINENO: result: $SED" >&5
 echo "${ECHO_T}$SED" >&6
 
@@ -4422,7 +4441,7 @@ ia64-*-hpux*)
   ;;
 *-*-irix6*)
   # Find out which ABI we are using.
-  echo '#line 4425 "configure"' > conftest.$ac_ext
+  echo '#line 4444 "configure"' > conftest.$ac_ext
   if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
   (eval $ac_compile) 2>&5
   ac_status=$?
@@ -5557,7 +5576,7 @@ fi
 
 
 # Provide some information about the compiler.
-echo "$as_me:5560:" \
+echo "$as_me:5579:" \
      "checking for Fortran 77 compiler version" >&5
 ac_compiler=`set X $ac_compile; echo $2`
 { (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5
@@ -6620,11 +6639,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:6623: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:6642: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>conftest.err)
    ac_status=$?
    cat conftest.err >&5
-   echo "$as_me:6627: \$? = $ac_status" >&5
+   echo "$as_me:6646: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s "$ac_outfile"; then
      # The compiler can only warn and ignore the option if not recognized
      # So say no if there are warnings other than the usual output.
@@ -6888,11 +6907,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:6891: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:6910: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>conftest.err)
    ac_status=$?
    cat conftest.err >&5
-   echo "$as_me:6895: \$? = $ac_status" >&5
+   echo "$as_me:6914: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s "$ac_outfile"; then
      # The compiler can only warn and ignore the option if not recognized
      # So say no if there are warnings other than the usual output.
@@ -6992,11 +7011,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:6995: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:7014: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>out/conftest.err)
    ac_status=$?
    cat out/conftest.err >&5
-   echo "$as_me:6999: \$? = $ac_status" >&5
+   echo "$as_me:7018: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s out/conftest2.$ac_objext
    then
      # The compiler can only warn and ignore the option if not recognized
@@ -8457,31 +8476,10 @@ linux*)
   # before this can be enabled.
   hardcode_into_libs=yes
 
-  # find out which ABI we are using
-  libsuff=
-  case "$host_cpu" in
-  x86_64*|s390x*|powerpc64*)
-    echo '#line 8464 "configure"' > conftest.$ac_ext
-    if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; then
-      case `/usr/bin/file conftest.$ac_objext` in
-      *64-bit*)
-        libsuff=64
-        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
-        ;;
-      esac
-    fi
-    rm -rf conftest*
-    ;;
-  esac
-
   # Append ld.so.conf contents to the search path
   if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
   fi
 
   # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -9358,7 +9356,7 @@ else
   lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2
   lt_status=$lt_dlunknown
   cat > conftest.$ac_ext <<EOF
-#line 9361 "configure"
+#line 9359 "configure"
 #include "confdefs.h"
 
 #if HAVE_DLFCN_H
@@ -9458,7 +9456,7 @@ else
   lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2
   lt_status=$lt_dlunknown
   cat > conftest.$ac_ext <<EOF
-#line 9461 "configure"
+#line 9459 "configure"
 #include "confdefs.h"
 
 #if HAVE_DLFCN_H
@@ -9789,9 +9787,6 @@ CC=$lt_compiler
 # Is the compiler the GNU C compiler?
 with_gcc=$GCC
 
-gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
-gcc_ver=\`gcc -dumpversion\`
-
 # An ERE matcher.
 EGREP=$lt_EGREP
 
@@ -9925,11 +9920,11 @@ striplib=$lt_striplib
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=\`echo $lt_predep_objects | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+predep_objects=$lt_predep_objects
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=\`echo $lt_postdep_objects | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+postdep_objects=$lt_postdep_objects
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -9941,7 +9936,7 @@ postdeps=$lt_postdeps
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=\`echo $lt_compiler_lib_search_path | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+compiler_lib_search_path=$lt_compiler_lib_search_path
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -10021,7 +10016,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$link_all_deplibs
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
 
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -11801,11 +11796,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:11804: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:11799: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>conftest.err)
    ac_status=$?
    cat conftest.err >&5
-   echo "$as_me:11808: \$? = $ac_status" >&5
+   echo "$as_me:11803: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s "$ac_outfile"; then
      # The compiler can only warn and ignore the option if not recognized
      # So say no if there are warnings other than the usual output.
@@ -11905,11 +11900,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:11908: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:11903: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>out/conftest.err)
    ac_status=$?
    cat out/conftest.err >&5
-   echo "$as_me:11912: \$? = $ac_status" >&5
+   echo "$as_me:11907: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s out/conftest2.$ac_objext
    then
      # The compiler can only warn and ignore the option if not recognized
@@ -12437,31 +12432,10 @@ linux*)
   # before this can be enabled.
   hardcode_into_libs=yes
 
-  # find out which ABI we are using
-  libsuff=
-  case "$host_cpu" in
-  x86_64*|s390x*|powerpc64*)
-    echo '#line 12444 "configure"' > conftest.$ac_ext
-    if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; then
-      case `/usr/bin/file conftest.$ac_objext` in
-      *64-bit*)
-        libsuff=64
-        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
-        ;;
-      esac
-    fi
-    rm -rf conftest*
-    ;;
-  esac
-
   # Append ld.so.conf contents to the search path
   if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
   fi
 
   # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -12845,9 +12819,6 @@ CC=$lt_compiler_CXX
 # Is the compiler the GNU C compiler?
 with_gcc=$GCC_CXX
 
-gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
-gcc_ver=\`gcc -dumpversion\`
-
 # An ERE matcher.
 EGREP=$lt_EGREP
 
@@ -12981,11 +12952,11 @@ striplib=$lt_striplib
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=\`echo $lt_predep_objects_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+predep_objects=$lt_predep_objects_CXX
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=\`echo $lt_postdep_objects_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+postdep_objects=$lt_postdep_objects_CXX
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -12997,7 +12968,7 @@ postdeps=$lt_postdeps_CXX
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+compiler_lib_search_path=$lt_compiler_lib_search_path_CXX
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -13077,7 +13048,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$link_all_deplibs_CXX
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
 
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -13499,11 +13470,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:13502: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:13473: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>conftest.err)
    ac_status=$?
    cat conftest.err >&5
-   echo "$as_me:13506: \$? = $ac_status" >&5
+   echo "$as_me:13477: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s "$ac_outfile"; then
      # The compiler can only warn and ignore the option if not recognized
      # So say no if there are warnings other than the usual output.
@@ -13603,11 +13574,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:13606: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:13577: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>out/conftest.err)
    ac_status=$?
    cat out/conftest.err >&5
-   echo "$as_me:13610: \$? = $ac_status" >&5
+   echo "$as_me:13581: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s out/conftest2.$ac_objext
    then
      # The compiler can only warn and ignore the option if not recognized
@@ -15048,31 +15019,10 @@ linux*)
   # before this can be enabled.
   hardcode_into_libs=yes
 
-  # find out which ABI we are using
-  libsuff=
-  case "$host_cpu" in
-  x86_64*|s390x*|powerpc64*)
-    echo '#line 15055 "configure"' > conftest.$ac_ext
-    if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; then
-      case `/usr/bin/file conftest.$ac_objext` in
-      *64-bit*)
-        libsuff=64
-        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
-        ;;
-      esac
-    fi
-    rm -rf conftest*
-    ;;
-  esac
-
   # Append ld.so.conf contents to the search path
   if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
   fi
 
   # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -15456,9 +15406,6 @@ CC=$lt_compiler_F77
 # Is the compiler the GNU C compiler?
 with_gcc=$GCC_F77
 
-gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
-gcc_ver=\`gcc -dumpversion\`
-
 # An ERE matcher.
 EGREP=$lt_EGREP
 
@@ -15592,11 +15539,11 @@ striplib=$lt_striplib
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=\`echo $lt_predep_objects_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+predep_objects=$lt_predep_objects_F77
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=\`echo $lt_postdep_objects_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+postdep_objects=$lt_postdep_objects_F77
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -15608,7 +15555,7 @@ postdeps=$lt_postdeps_F77
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+compiler_lib_search_path=$lt_compiler_lib_search_path_F77
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -15688,7 +15635,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$link_all_deplibs_F77
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
 
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -15830,11 +15777,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:15833: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:15780: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>conftest.err)
    ac_status=$?
    cat conftest.err >&5
-   echo "$as_me:15837: \$? = $ac_status" >&5
+   echo "$as_me:15784: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s "$ac_outfile"; then
      # The compiler can only warn and ignore the option if not recognized
      # So say no if there are warnings other than the usual output.
@@ -16098,11 +16045,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:16101: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:16048: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>conftest.err)
    ac_status=$?
    cat conftest.err >&5
-   echo "$as_me:16105: \$? = $ac_status" >&5
+   echo "$as_me:16052: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s "$ac_outfile"; then
      # The compiler can only warn and ignore the option if not recognized
      # So say no if there are warnings other than the usual output.
@@ -16202,11 +16149,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:16205: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:16152: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>out/conftest.err)
    ac_status=$?
    cat out/conftest.err >&5
-   echo "$as_me:16209: \$? = $ac_status" >&5
+   echo "$as_me:16156: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s out/conftest2.$ac_objext
    then
      # The compiler can only warn and ignore the option if not recognized
@@ -17667,31 +17614,10 @@ linux*)
   # before this can be enabled.
   hardcode_into_libs=yes
 
-  # find out which ABI we are using
-  libsuff=
-  case "$host_cpu" in
-  x86_64*|s390x*|powerpc64*)
-    echo '#line 17674 "configure"' > conftest.$ac_ext
-    if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; then
-      case `/usr/bin/file conftest.$ac_objext` in
-      *64-bit*)
-        libsuff=64
-        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
-        ;;
-      esac
-    fi
-    rm -rf conftest*
-    ;;
-  esac
-
   # Append ld.so.conf contents to the search path
   if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
   fi
 
   # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -18075,9 +18001,6 @@ CC=$lt_compiler_GCJ
 # Is the compiler the GNU C compiler?
 with_gcc=$GCC_GCJ
 
-gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
-gcc_ver=\`gcc -dumpversion\`
-
 # An ERE matcher.
 EGREP=$lt_EGREP
 
@@ -18211,11 +18134,11 @@ striplib=$lt_striplib
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=\`echo $lt_predep_objects_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+predep_objects=$lt_predep_objects_GCJ
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=\`echo $lt_postdep_objects_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+postdep_objects=$lt_postdep_objects_GCJ
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -18227,7 +18150,7 @@ postdeps=$lt_postdeps_GCJ
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+compiler_lib_search_path=$lt_compiler_lib_search_path_GCJ
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -18307,7 +18230,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$link_all_deplibs_GCJ
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
 
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -18559,9 +18482,6 @@ CC=$lt_compiler_RC
 # Is the compiler the GNU C compiler?
 with_gcc=$GCC_RC
 
-gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
-gcc_ver=\`gcc -dumpversion\`
-
 # An ERE matcher.
 EGREP=$lt_EGREP
 
@@ -18695,11 +18615,11 @@ striplib=$lt_striplib
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=\`echo $lt_predep_objects_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+predep_objects=$lt_predep_objects_RC
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=\`echo $lt_postdep_objects_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+postdep_objects=$lt_postdep_objects_RC
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -18711,7 +18631,7 @@ postdeps=$lt_postdeps_RC
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+compiler_lib_search_path=$lt_compiler_lib_search_path_RC
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -18791,7 +18711,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$link_all_deplibs_RC
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
 
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -19715,7 +19635,6 @@ s,@host@,$host,;t t
 s,@host_cpu@,$host_cpu,;t t
 s,@host_vendor@,$host_vendor,;t t
 s,@host_os@,$host_os,;t t
-s,@SED@,$SED,;t t
 s,@EGREP@,$EGREP,;t t
 s,@LN_S@,$LN_S,;t t
 s,@ECHO@,$ECHO,;t t
@@ -20200,3 +20119,4 @@ if test "$no_create" != yes; then
   # would make configure fail if this is the last instruction.
   $ac_cs_success || { (exit 1); exit 1; }
 fi
+
diff --git a/AMDiS/configure.ac b/AMDiS/configure.ac
index 192f423f..8bc69e3d 100644
--- a/AMDiS/configure.ac
+++ b/AMDiS/configure.ac
@@ -54,6 +54,18 @@ if test $mpidir != no ; then
   AC_SUBST(CC, $mpidir/bin/mpicc)
 fi
 
+AC_ARG_ENABLE(marmot,
+  [  --enable-marmot    Use marmot compiler for mpi debugging.],
+  [case "${enableval}" in
+    yes) marmot=true ;;
+    no)  marmot=false ;;
+    *) AC_MSG_ERROR(bad value ${enableval} for --enable-marmot) ;;
+  esac],[marmot=false])
+if test $marmot != false ; then
+  AC_SUBST(CXX, marmotcxx)
+  AC_SUBST(CC, marmotcc)
+fi
+
 AC_ARG_WITH(petsc, [  --with-petsc=PETSC_DIR], petscdir=$withval, petscdir=no)
 AC_SUBST(PETSC_DIR, $petscdir)
 
@@ -115,4 +127,4 @@ AC_CONFIG_FILES([
 	lib/Makefile
 	bin/Makefile
 	])
-AC_OUTPUT
\ No newline at end of file
+AC_OUTPUT
diff --git a/AMDiS/libtool b/AMDiS/libtool
index 5a2f54ef..5017b204 100755
--- a/AMDiS/libtool
+++ b/AMDiS/libtool
@@ -30,10 +30,10 @@
 # the same distribution terms that you use for the rest of that program.
 
 # A sed program that does not truncate output.
-SED="/bin/sed"
+SED="/usr/bin/sed"
 
 # Sed that helps us avoid accidentally triggering echo(1) options like -n.
-Xsed="/bin/sed -e 1s/^X//"
+Xsed="/usr/bin/sed -e 1s/^X//"
 
 # The HP-UX ksh and POSIX shell print the target directory to stdout
 # if CDPATH is set.
@@ -44,7 +44,7 @@ available_tags=" CXX F77"
 
 # ### BEGIN LIBTOOL CONFIG
 
-# Libtool was configured on host NWRW15:
+# Libtool was configured on host deimos103:
 
 # Shell to use when invoking shell scripts.
 SHELL="/bin/sh"
@@ -66,12 +66,12 @@ fast_install=yes
 
 # The host system.
 host_alias=
-host=i686-pc-linux-gnu
+host=x86_64-unknown-linux-gnu
 host_os=linux-gnu
 
 # The build system.
 build_alias=
-build=i686-pc-linux-gnu
+build=x86_64-unknown-linux-gnu
 build_os=linux-gnu
 
 # An echo program that does not interpret backslashes.
@@ -82,25 +82,22 @@ AR="ar"
 AR_FLAGS="cru"
 
 # A C compiler.
-LTCC="/usr/lib/openmpi/1.3.2-gcc//bin/mpicc"
+LTCC="marmotcc"
 
 # LTCC compiler flags.
 LTCFLAGS="-g -O2"
 
 # A language-specific compiler.
-CC="/usr/lib/openmpi/1.3.2-gcc//bin/mpicc"
+CC="marmotcc"
 
 # Is the compiler the GNU C compiler?
 with_gcc=yes
 
-gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
-gcc_ver=`gcc -dumpversion`
-
 # An ERE matcher.
 EGREP="grep -E"
 
 # The linker used to build libraries.
-LD="/usr/bin/ld"
+LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
 
 # Whether we need hard or soft links.
 LN_S="ln -s"
@@ -232,11 +229,11 @@ striplib="strip --strip-unneeded"
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+predep_objects=""
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+postdep_objects=""
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -248,7 +245,7 @@ postdeps=""
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+compiler_lib_search_path=""
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method="pass_all"
@@ -328,10 +325,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
 link_all_deplibs=unknown
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
 
 # Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
 
 # Fix the shell variable $srcfile for the compiler.
 fix_srcfile_path=""
@@ -6763,7 +6760,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
 # End:
 # ### BEGIN LIBTOOL TAG CONFIG: CXX
 
-# Libtool was configured on host NWRW15:
+# Libtool was configured on host deimos103:
 
 # Shell to use when invoking shell scripts.
 SHELL="/bin/sh"
@@ -6785,12 +6782,12 @@ fast_install=yes
 
 # The host system.
 host_alias=
-host=i686-pc-linux-gnu
+host=x86_64-unknown-linux-gnu
 host_os=linux-gnu
 
 # The build system.
 build_alias=
-build=i686-pc-linux-gnu
+build=x86_64-unknown-linux-gnu
 build_os=linux-gnu
 
 # An echo program that does not interpret backslashes.
@@ -6801,25 +6798,22 @@ AR="ar"
 AR_FLAGS="cru"
 
 # A C compiler.
-LTCC="/usr/lib/openmpi/1.3.2-gcc//bin/mpicc"
+LTCC="marmotcc"
 
 # LTCC compiler flags.
 LTCFLAGS="-g -O2"
 
 # A language-specific compiler.
-CC="/usr/lib/openmpi/1.3.2-gcc//bin/mpiCC"
+CC="marmotcxx"
 
 # Is the compiler the GNU C compiler?
 with_gcc=yes
 
-gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
-gcc_ver=`gcc -dumpversion`
-
 # An ERE matcher.
 EGREP="grep -E"
 
 # The linker used to build libraries.
-LD="/usr/bin/ld"
+LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
 
 # Whether we need hard or soft links.
 LN_S="ln -s"
@@ -6948,11 +6942,11 @@ striplib="strip --strip-unneeded"
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbeginS.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o"
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/crtendS.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o"
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -6960,11 +6954,11 @@ predeps=""
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
+postdeps="-lmarmot-profile -lmarmot-core -lpthread -lstdc++ -lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=`echo "-L/usr/lib/openmpi/1.3.2-gcc/lib -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.." | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+compiler_lib_search_path="-L/licsoft/tools/marmot/2.3.1b-openmpi-gnu-fpic/lib -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64 -L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method="pass_all"
@@ -7044,10 +7038,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
 link_all_deplibs=unknown
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
 
 # Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
 
 # Fix the shell variable $srcfile for the compiler.
 fix_srcfile_path=""
@@ -7071,7 +7065,7 @@ include_expsyms=""
 
 # ### BEGIN LIBTOOL TAG CONFIG: F77
 
-# Libtool was configured on host NWRW15:
+# Libtool was configured on host deimos103:
 
 # Shell to use when invoking shell scripts.
 SHELL="/bin/sh"
@@ -7093,12 +7087,12 @@ fast_install=yes
 
 # The host system.
 host_alias=
-host=i686-pc-linux-gnu
+host=x86_64-unknown-linux-gnu
 host_os=linux-gnu
 
 # The build system.
 build_alias=
-build=i686-pc-linux-gnu
+build=x86_64-unknown-linux-gnu
 build_os=linux-gnu
 
 # An echo program that does not interpret backslashes.
@@ -7109,7 +7103,7 @@ AR="ar"
 AR_FLAGS="cru"
 
 # A C compiler.
-LTCC="/usr/lib/openmpi/1.3.2-gcc//bin/mpicc"
+LTCC="marmotcc"
 
 # LTCC compiler flags.
 LTCFLAGS="-g -O2"
@@ -7118,16 +7112,13 @@ LTCFLAGS="-g -O2"
 CC="g77"
 
 # Is the compiler the GNU C compiler?
-with_gcc=yes
-
-gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
-gcc_ver=`gcc -dumpversion`
+with_gcc=
 
 # An ERE matcher.
 EGREP="grep -E"
 
 # The linker used to build libraries.
-LD="/usr/bin/ld"
+LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
 
 # Whether we need hard or soft links.
 LN_S="ln -s"
@@ -7259,11 +7250,11 @@ striplib="strip --strip-unneeded"
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+predep_objects=""
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+postdep_objects=""
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -7275,7 +7266,7 @@ postdeps=""
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+compiler_lib_search_path=""
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method="pass_all"
@@ -7355,10 +7346,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
 link_all_deplibs=unknown
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../ /lib/i386-redhat-linux/3.4.6/ /lib/ /usr/lib/i386-redhat-linux/3.4.6/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
+sys_lib_search_path_spec=" /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/"
 
 # Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
 
 # Fix the shell variable $srcfile for the compiler.
 fix_srcfile_path=""
diff --git a/AMDiS/other/include/Makefile_AMDiS.mk b/AMDiS/other/include/Makefile_AMDiS.mk
index b5054cfd..5df5370e 100644
--- a/AMDiS/other/include/Makefile_AMDiS.mk
+++ b/AMDiS/other/include/Makefile_AMDiS.mk
@@ -1,12 +1,3 @@
-#
-# standard definition and rules to compile AMDiS user programms
-#
-# ============================================================================
-#                 !!! Do not edit after this line !!!
-# ============================================================================
-
-
-
 PARMETIS_DIR = $(AMDIS_DIR)/lib/ParMetis-3.1
 
 # ============================================================================
@@ -96,6 +87,10 @@ else
 	endif
 endif
 
+ifeq ($(strip $(USE_MARMOT)), 1)
+	COMPILE = marmotcxx
+endif
+
 # ============================================================================
 # ===== compile flags ========================================================
 # ============================================================================
diff --git a/AMDiS/src/DOFVector.h b/AMDiS/src/DOFVector.h
index de10fc95..f8b058c1 100644
--- a/AMDiS/src/DOFVector.h
+++ b/AMDiS/src/DOFVector.h
@@ -391,6 +391,11 @@ namespace AMDiS {
       return coarsenOperation; 
     }
 
+    inline CoarsenOperation* getCoarsenOperationPtr() 
+    { 
+      return &coarsenOperation; 
+    }
+
     /// Restriction after coarsening. Implemented for DOFVector<double>
     inline void coarseRestrict(RCNeighbourList&, int) {}
 
diff --git a/AMDiS/src/ParallelDomainBase.cc b/AMDiS/src/ParallelDomainBase.cc
index 8eef5d43..31e21ec4 100644
--- a/AMDiS/src/ParallelDomainBase.cc
+++ b/AMDiS/src/ParallelDomainBase.cc
@@ -708,7 +708,6 @@ namespace AMDiS {
 	mpiComm.Irecv(recvBuffers[i], nRecvDOFs, MPI_DOUBLE, recvIt->first, 0);
     }
 
-
     MPI::Request::Waitall(requestCounter, request);
 
     i = 0;
@@ -1139,73 +1138,75 @@ namespace AMDiS {
 
     // === Do the same for the periodic boundaries. ===
 
-    requestCounter = 0;
-
-    for (RankToBoundMap::iterator rankIt = periodicBoundary.boundary.begin();
-	 rankIt != periodicBoundary.boundary.end(); ++rankIt) {
-
-      TEST_EXIT_DBG(rankIt->first != mpiRank)
-	("It is no possible to have an interior boundary within a rank partition!\n");
-
-      if (rankIt->first < mpiRank) {
-	int nSendInt = rankIt->second.size();
-	int* buffer = new int[nSendInt * 2];
-	for (int i = 0; i < nSendInt; i++) {
-	  buffer[i * 2] = (rankIt->second)[i].rankObj.elIndex;
-	  buffer[i * 2 + 1] = (rankIt->second)[i].rankObj.ithObj;
-	}
-	sendBuffers.push_back(buffer);
+    if (periodicBoundary.boundary.size() > 0) {
 
-	request[requestCounter++] =
-	  mpiComm.Isend(buffer, nSendInt * 2, MPI_INT, rankIt->first, 0);
-      } else {
-	int nRecvInt = rankIt->second.size();
-	int *buffer = new int[nRecvInt * 2];
-	recvBuffers.push_back(buffer);
+      requestCounter = 0;
+      
+      for (RankToBoundMap::iterator rankIt = periodicBoundary.boundary.begin();
+	   rankIt != periodicBoundary.boundary.end(); ++rankIt) {
 	
-	request[requestCounter++] = 
-	  mpiComm.Irecv(buffer, nRecvInt * 2, MPI_INT, rankIt->first, 0);	
-      }
-    }
-
-
-    MPI::Request::Waitall(requestCounter, request);
-
-
-    i = 0;
-    for (RankToBoundMap::iterator rankIt = periodicBoundary.boundary.begin();
-	 rankIt != periodicBoundary.boundary.end(); ++rankIt) {
-      if (rankIt->first > mpiRank) {
-
-	for (int j = 0; j < static_cast<int>(rankIt->second.size()); j++) 
-	  if (periodicBoundary.boundary[rankIt->first][j].neighObj.elIndex != recvBuffers[i][j * 2] ||
-	      periodicBoundary.boundary[rankIt->first][j].neighObj.ithObj != recvBuffers[i][j * 2 + 1]) {
-	    int k = j + 1;
-
-	    for (; k < static_cast<int>(rankIt->second.size()); k++)
-	      if (periodicBoundary.boundary[rankIt->first][k].neighObj.elIndex == recvBuffers[i][j * 2] && 
-		  periodicBoundary.boundary[rankIt->first][k].neighObj.ithObj == recvBuffers[i][j * 2 + 1])
-		break;
-
-	    // The element must always be found, because the list is just in another order.
-	    TEST_EXIT_DBG(k < static_cast<int>(rankIt->second.size()))
-	      ("Should never happen!\n");
-	    
-	    // Swap the current with the found element.
-	    AtomicBoundary tmpBound = (rankIt->second)[k];
-	    (rankIt->second)[k] = (rankIt->second)[j];
-	    (rankIt->second)[j] = tmpBound;	
+	TEST_EXIT_DBG(rankIt->first != mpiRank)
+	  ("It is no possible to have an interior boundary within a rank partition!\n");
+	
+	if (rankIt->first < mpiRank) {
+	  int nSendInt = rankIt->second.size();
+	  int* buffer = new int[nSendInt * 2];
+	  for (int i = 0; i < nSendInt; i++) {
+	    buffer[i * 2] = (rankIt->second)[i].rankObj.elIndex;
+	    buffer[i * 2 + 1] = (rankIt->second)[i].rankObj.ithObj;
 	  }
-
-	delete [] recvBuffers[i];
-	i++;
+	  sendBuffers.push_back(buffer);
+	  
+	  request[requestCounter++] =
+	    mpiComm.Isend(buffer, nSendInt * 2, MPI_INT, rankIt->first, 0);
+	} else {
+	  int nRecvInt = rankIt->second.size();
+	  int *buffer = new int[nRecvInt * 2];
+	  recvBuffers.push_back(buffer);
+	  
+	  request[requestCounter++] = 
+	    mpiComm.Irecv(buffer, nRecvInt * 2, MPI_INT, rankIt->first, 0);	
+	}
       }
-    }
+      
+      MPI::Request::Waitall(requestCounter, request);
+      
+      i = 0;
+      for (RankToBoundMap::iterator rankIt = periodicBoundary.boundary.begin();
+	   rankIt != periodicBoundary.boundary.end(); ++rankIt) {
+	if (rankIt->first > mpiRank) {
+	  
+	  for (int j = 0; j < static_cast<int>(rankIt->second.size()); j++) 
+	    if (periodicBoundary.boundary[rankIt->first][j].neighObj.elIndex != recvBuffers[i][j * 2] ||
+		periodicBoundary.boundary[rankIt->first][j].neighObj.ithObj != recvBuffers[i][j * 2 + 1]) {
+	      int k = j + 1;
+	      
+	      for (; k < static_cast<int>(rankIt->second.size()); k++)
+		if (periodicBoundary.boundary[rankIt->first][k].neighObj.elIndex == recvBuffers[i][j * 2] && 
+		    periodicBoundary.boundary[rankIt->first][k].neighObj.ithObj == recvBuffers[i][j * 2 + 1])
+		  break;
+	      
+	      // The element must always be found, because the list is just in another order.
+	      TEST_EXIT_DBG(k < static_cast<int>(rankIt->second.size()))
+		("Should never happen!\n");
+	      
+	      // Swap the current with the found element.
+	      AtomicBoundary tmpBound = (rankIt->second)[k];
+	      (rankIt->second)[k] = (rankIt->second)[j];
+	      (rankIt->second)[j] = tmpBound;	
+	    }
+	  
+	  delete [] recvBuffers[i];
+	  i++;
+	}
+      }
+      
+      for (int i = 0; i < static_cast<int>(sendBuffers.size()); i++)
+	delete [] sendBuffers[i];   
 
-    for (int i = 0; i < static_cast<int>(sendBuffers.size()); i++)
-      delete [] sendBuffers[i]; 
+    } // periodicBoundary.boundary.size() > 0
   }
-
+    
 
   void ParallelDomainBase::removeMacroElements()
   {
@@ -1766,6 +1767,9 @@ namespace AMDiS {
   {
     FUNCNAME("ParallelDomainBase::createPeriodicMap()");
 
+    if (periodicBoundary.boundary.size() == 0)
+      return;
+
     // Clear all periodic dof mappings calculated before. We do it from scratch.
     periodicDof.clear();
 
@@ -2179,7 +2183,6 @@ namespace AMDiS {
 	mpiComm.Irecv(buffer, nRecvInt, MPI_INT, rankIt->first, 0);
     }
 
-
     MPI::Request::Waitall(requestCounter, request);
 
     for (int i = 0; i < static_cast<int>(sendBuffers.size()); i++)
diff --git a/AMDiS/src/ParallelDomainVec.cc b/AMDiS/src/ParallelDomainVec.cc
index 205e82be..56b636d6 100644
--- a/AMDiS/src/ParallelDomainVec.cc
+++ b/AMDiS/src/ParallelDomainVec.cc
@@ -84,7 +84,9 @@ namespace AMDiS {
       if (probVec->getRHS()->getDOFVector(i)->getBoundaryManager())
 	removeBoundaryCondition(const_cast<BoundaryIndexMap&>(probVec->getRHS()->getDOFVector(i)->getBoundaryManager()->getBoundaryConditionMap()));
 
-      std::cout << "TEST SOL " << probVec->getSolution()->getDOFVector(i)  << ": " << probVec->getSolution()->getDOFVector(i)->getCoarsenOperation() << std::endl;
+      CoarsenOperation* oooo = probVec->getSolution()->getDOFVector(i)->getCoarsenOperationPtr();
+
+      std::cout << "TEST SOL " << probVec->getSolution()->getDOFVector(i)  << ": " << *oooo << std::endl;
 
       std::cout << "TEST RHS " << probVec->getRHS()->getDOFVector(i) << ": " << probVec->getRHS()->getDOFVector(i)->getCoarsenOperation() << std::endl;
     }
@@ -96,6 +98,8 @@ namespace AMDiS {
       elInfo->getElement()->deleteElementData(PERIODIC);
       elInfo = stack.traverseNext(elInfo);
     }    
+
+    std::cout << "TEST FINAL 1 " << probVec->getSolution()->getDOFVector(0)  << ": " <<  probVec->getSolution()->getDOFVector(0)->getCoarsenOperation() << std::endl;
   }
 
   void ParallelDomainVec::exitParallelization(AdaptInfo *adaptInfo)
@@ -103,6 +107,18 @@ namespace AMDiS {
     ParallelDomainBase::exitParallelization(adaptInfo);
   }
 
+  void ParallelDomainVec::solveInitialProblem(AdaptInfo *adaptInfo)
+  {   
+    std::cout << "TEST FINAL 2 " << probVec->getSolution()->getDOFVector(0)  << ": " <<  probVec->getSolution()->getDOFVector(0)->getCoarsenOperation() << std::endl;
+    
+    ParallelDomainBase::solveInitialProblem(adaptInfo);
+    
+    std::cout << "TEST FINAL 3 " << probVec->getSolution()->getDOFVector(0)  << ": " <<  probVec->getSolution()->getDOFVector(0)->getCoarsenOperation() << std::endl;
+    
+    synchVectors(*(probVec->getSolution()));
+    
+    std::cout << "TEST FINAL 4 " << probVec->getSolution()->getDOFVector(0)  << ": " <<  probVec->getSolution()->getDOFVector(0)->getCoarsenOperation() << std::endl;
+  }
 
   void ParallelDomainVec::solve()
   {
diff --git a/AMDiS/src/ParallelDomainVec.h b/AMDiS/src/ParallelDomainVec.h
index f1d42e62..79c5f733 100644
--- a/AMDiS/src/ParallelDomainVec.h
+++ b/AMDiS/src/ParallelDomainVec.h
@@ -38,12 +38,7 @@ namespace AMDiS {
 
     void exitParallelization(AdaptInfo *adaptInfo);
 
-    virtual void solveInitialProblem(AdaptInfo *adaptInfo)
-    {
-      ParallelDomainBase::solveInitialProblem(adaptInfo);
-
-      synchVectors(*(probVec->getSolution()));
-    }
+    virtual void solveInitialProblem(AdaptInfo *adaptInfo);  
 
     // Writes all data of this object to an output stream.
     virtual void serialize(std::ostream &out)
-- 
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