project(AMDIS) cmake_minimum_required(VERSION 2.6) cmake_policy(SET CMP0017 OLD) if(POLICY CMP0042) cmake_policy(SET CMP0042 NEW) endif() SET(LIB_DIR ${AMDIS_SOURCE_DIR}/lib) SET(SOURCE_DIR ${AMDIS_SOURCE_DIR}/src) #TODO: use the cmake build type SET(MTL_INCLUDE_DIR ${LIB_DIR}/mtl4/ CACHE PATH "mtl4 directory") set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -DDEBUG=0") #-Wno-unused-but-set-variable set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -DDEBUG=1 -O0") #-Wno-unused-but-set-variable find_package(Subversion) if(Subversion_FOUND) Subversion_WC_INFO(${CMAKE_CURRENT_SOURCE_DIR} svn_info) #message("svn-rev: ${svn_info_WC_REVISION}") set(AMDIS_SUB_MINOR "${svn_info_WC_REVISION}") endif() set(CurrentRevision "0.9") if(NOT AMDIS_MAJOR) set(AMDIS_MAJOR "0") endif() if(NOT AMDIS_MINOR) set(AMDIS_MINOR "9") endif() list(APPEND COMPILEFLAGS "-DAMDIS_VERSION=${CurrentRevision}") #define the build type, empty can be everything and nothing if(CMAKE_BUILD_TYPE STREQUAL "") set(CMAKE_BUILD_TYPE "Release") endif() if(CMAKE_CXX_COMPILER MATCHES ".*icpc") Message("Compiler: Intel") set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -diag-disable 654 -diag-disable 858") endif() SET(ENABLE_PARALLEL_DOMAIN "OFF" CACHE STRING "use parallel domain decomposition. please set to one of: PMTL, PETSC, OFF" ) option(USE_PETSC_DEV false) option(ENABLE_ZOLTAN false) option(ENABLE_CXX11 "Enable C++11 compiler features" false) option(ENABLE_SEQ_PETSC "Use sequential PETSc solvers" false) option(ENABLE_UMFPACK "Use of UMFPACK solver" false) option(ENABLE_HYPRE "Use HYPRE AMG solver" false) option(ENABLE_PNG "use png reader/writer" false) option(ENABLE_BDDCML "Use of BDDCML library" false) option(ENABLE_EXTENSIONS "Use extensions" false) option(ENABLE_OPENMP "Use OpenMP" false) option(ENABLE_COMPRESSION "Use output compression" false) option(ENABLE_OUTPUT "AMDiS output printing, disable only for debugging!" true) mark_as_advanced(ENABLE_OUTPUT) mark_as_advanced(ENABLE_BDDCML) mark_as_advanced(USE_PETSC_DEV) find_package(Boost 1.44 REQUIRED) if(Boost_FOUND) list(APPEND AMDIS_INCLUDE_DIRS ${Boost_INCLUDE_DIR}) message("boost lib-dirs: ${Boost_LIBRARY_DIRS}") message("use the boost dir: ${Boost_INCLUDE_DIR}") if(WIN32) message("the windows find_boost does not set the boost library paths, please set it") SET(Boost_LIBRARY_DIRS CACHE PATH "The directory containing the boost libraries") endif(WIN32) list(APPEND AMDIS_LINK_DIRS ${Boost_LIBRARY_DIRS}) endif(Boost_FOUND) SET(AMDIS_SRC ${SOURCE_DIR}/AdaptBase.cc ${SOURCE_DIR}/AdaptInfo.cc ${SOURCE_DIR}/AdaptInstationary.cc ${SOURCE_DIR}/AdaptStationary.cc ${SOURCE_DIR}/AMDiS.cc ${SOURCE_DIR}/Assembler.cc ${SOURCE_DIR}/BasisFunction.cc ${SOURCE_DIR}/Boundary.cc ${SOURCE_DIR}/BoundaryManager.cc ${SOURCE_DIR}/BoundaryObject.cc ${SOURCE_DIR}/Bubble.cc ${SOURCE_DIR}/Cholesky.cc ${SOURCE_DIR}/CoarseningManager.cc ${SOURCE_DIR}/CoarseningManager1d.cc ${SOURCE_DIR}/CoarseningManager2d.cc ${SOURCE_DIR}/CoarseningManager3d.cc ${SOURCE_DIR}/ComponentTraverseInfo.cc ${SOURCE_DIR}/CouplingIterationInterface.cc ${SOURCE_DIR}/CreatorMap.cc ${SOURCE_DIR}/DOFAdmin.cc ${SOURCE_DIR}/DOFIndexed.cc ${SOURCE_DIR}/DOFMatrix.cc ${SOURCE_DIR}/DOFVector.cc ${SOURCE_DIR}/Debug.cc ${SOURCE_DIR}/DirichletBC.cc ${SOURCE_DIR}/DualTraverse.cc ${SOURCE_DIR}/ElInfo.cc ${SOURCE_DIR}/ElInfo1d.cc ${SOURCE_DIR}/ElInfo2d.cc ${SOURCE_DIR}/ElInfo3d.cc ${SOURCE_DIR}/ElInfoStack.cc ${SOURCE_DIR}/Element.cc ${SOURCE_DIR}/ElementData.cc ${SOURCE_DIR}/ElementDofIterator.cc ${SOURCE_DIR}/ElementRegion_ED.cc ${SOURCE_DIR}/FiniteElemSpace.cc ${SOURCE_DIR}/FirstOrderAssembler.cc ${SOURCE_DIR}/FirstOrderTerm.cc ${SOURCE_DIR}/FixVec.cc ${SOURCE_DIR}/Global.cc ${SOURCE_DIR}/GlobalDOFNumbering.cc ${SOURCE_DIR}/GlobalElementNumbering.cc ${SOURCE_DIR}/Initfile.cc ${SOURCE_DIR}/Lagrange.cc ${SOURCE_DIR}/LeafData.cc ${SOURCE_DIR}/Line.cc ${SOURCE_DIR}/MacroElement.cc ${SOURCE_DIR}/Marker.cc ${SOURCE_DIR}/MatrixVector.cc # ${SOURCE_DIR}/Test_MatrixVectorOperations.cc ${SOURCE_DIR}/Mesh.cc ${SOURCE_DIR}/MeshStructure.cc ${SOURCE_DIR}/Operator.cc ${SOURCE_DIR}/OperatorTerm.cc ${SOURCE_DIR}/Parametric.cc ${SOURCE_DIR}/PeriodicBC.cc #${SOURCE_DIR}/ProblemImplicit.cc ${SOURCE_DIR}/ProblemInstat.cc ${SOURCE_DIR}/ProblemInterpol.cc ${SOURCE_DIR}/ProblemStat.cc ${SOURCE_DIR}/ProblemStatDbg.cc ${SOURCE_DIR}/Projection.cc ${SOURCE_DIR}/QPInfo.cc ${SOURCE_DIR}/QPsiPhi.cc ${SOURCE_DIR}/Quadrature.cc ${SOURCE_DIR}/RCNeighbourList.cc ${SOURCE_DIR}/Recovery.cc ${SOURCE_DIR}/RefinementManager.cc ${SOURCE_DIR}/RefinementManager1d.cc ${SOURCE_DIR}/RefinementManager2d.cc ${SOURCE_DIR}/RefinementManager3d.cc ${SOURCE_DIR}/RobinBC.cc ${SOURCE_DIR}/ScalableQuadrature.cc ${SOURCE_DIR}/SecondOrderAssembler.cc ${SOURCE_DIR}/SecondOrderTerm.cc ${SOURCE_DIR}/Serializer.cc ${SOURCE_DIR}/StandardProblemIteration.cc ${SOURCE_DIR}/SubAssembler.cc ${SOURCE_DIR}/SubElInfo.cc ${SOURCE_DIR}/SubQuadrature.cc ${SOURCE_DIR}/SurfaceQuadrature.cc ${SOURCE_DIR}/SurfaceRegion_ED.cc ${SOURCE_DIR}/SystemVector.cc ${SOURCE_DIR}/Tetrahedron.cc ${SOURCE_DIR}/Timer.cc ${SOURCE_DIR}/Traverse.cc ${SOURCE_DIR}/Triangle.cc ${SOURCE_DIR}/VertexVector.cc ${SOURCE_DIR}/ZeroOrderAssembler.cc ${SOURCE_DIR}/ZeroOrderTerm.cc ${SOURCE_DIR}/est/Estimator.cc ${SOURCE_DIR}/est/RecoveryEstimator.cc ${SOURCE_DIR}/est/ResidualEstimator.cc ${SOURCE_DIR}/est/SimpleResidualEstimator.cc ${SOURCE_DIR}/io/ArhReader.cc ${SOURCE_DIR}/io/detail/ArhReader.cc ${SOURCE_DIR}/io/Arh2Reader.cc ${SOURCE_DIR}/io/Arh2Writer.cc ${SOURCE_DIR}/io/Arh3Reader.cc ${SOURCE_DIR}/io/Arh3Writer.cc ${SOURCE_DIR}/io/detail/Arh2Reader.cc ${SOURCE_DIR}/io/detail/ArhWriter.cc ${SOURCE_DIR}/io/detail/Arh2Writer.cc ${SOURCE_DIR}/io/detail/Arh3Reader.cc ${SOURCE_DIR}/io/detail/Arh3Writer.cc ${SOURCE_DIR}/io/DofWriter.cc ${SOURCE_DIR}/io/ElementFileWriter.cc ${SOURCE_DIR}/io/FileWriterInterface.cc ${SOURCE_DIR}/io/FileWriter.cc ${SOURCE_DIR}/io/GNUPlotWriter.cc ${SOURCE_DIR}/io/MacroInfo.cc ${SOURCE_DIR}/io/MacroReader.cc ${SOURCE_DIR}/io/MacroWriter.cc ${SOURCE_DIR}/io/PngReader.cc ${SOURCE_DIR}/io/PngWriter.cc ${SOURCE_DIR}/io/PovrayWriter.cc ${SOURCE_DIR}/io/Spreadsheet.cc ${SOURCE_DIR}/io/ValueReader.cc ${SOURCE_DIR}/io/ValueWriter.cc ${SOURCE_DIR}/io/VtkWriter.cc ${SOURCE_DIR}/io/VtkVectorWriter.cc ${SOURCE_DIR}/io/detail/VtkWriter.cc ${SOURCE_DIR}/nonlin/ProblemNonLin.cc ${SOURCE_DIR}/solver/SolverMatrix.cc ${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc ${SOURCE_DIR}/time/RosenbrockMethod.cc ${SOURCE_DIR}/time/RosenbrockStationary.cc ) if(ENABLE_PARALLEL_DOMAIN) ### Search for MPI compiler and get compile flags and include paths. ### find_package(MPI REQUIRED) if(MPI_FOUND) list(APPEND COMPILEFLAGS "${MPI_COMPILE_FLAGS}") include_directories(${MPI_INCLUDE_PATH}) endif(MPI_FOUND) ### Search for ParMetis ### find_file(PARMETIS_HEADER_FILE "parmetis.h" PATH ENV CPATH) if(PARMETIS_HEADER_FILE) get_filename_component(PARMETIS_INCLUDE_PATH "${PARMETIS_HEADER_FILE}" PATH CACHE) include_directories(${PARMETIS_INCLUDE_PATH}) else() message(FATAL_ERROR "Could not find ParMetis header file!") endif(PARMETIS_HEADER_FILE) # find_file(PARMETIS_LIB_FILE "libparmetis.a" PATH ENV LIBRARY_PATH) # if(PARMETIS_LIB_FILE) # get_filename_component(PARMETIS_LINK_PATH "${PARMETIS_LIB_FILE}" PATH CACHE) # link_directories(${PARMETIS_LINK_PATH}) # else() # message(FATAL_ERROR "Could not find ParMetis library file!") # endif(PARMETIS_LIB_FILE) ### Search for Zoltan ### if(ENABLE_ZOLTAN) find_file(ZOLTAN_HEADER_FILE "zoltan_cpp.h" PATH ENV CPATH) if(ZOLTAN_HEADER_FILE) get_filename_component(ZOLTAN_HEADER_DIR "${ZOLTAN_HEADER_FILE}" PATH CACHE) include_directories(${ZOLTAN_HEADER_DIR}) else() message(FATAL_ERROR "Could not find Zoltan include file!") endif(ZOLTAN_HEADER_FILE) list(APPEND COMPILEFLAGS "-DHAVE_ZOLTAN") endif(ENABLE_ZOLTAN) list(APPEND COMPILEFLAGS "-DHAVE_PARALLEL_DOMAIN_AMDIS=1") SET(PARALLEL_DOMAIN_AMDIS_SRC ${SOURCE_DIR}/parallel/BddcMlSolver.cc ${SOURCE_DIR}/parallel/DofComm.cc ${SOURCE_DIR}/parallel/CheckerPartitioner.cc ${SOURCE_DIR}/parallel/ElementObjectDatabase.cc ${SOURCE_DIR}/parallel/InteriorBoundary.cc ${SOURCE_DIR}/parallel/MeshDistributor.cc ${SOURCE_DIR}/parallel/MeshLevelData.cc ${SOURCE_DIR}/parallel/MeshManipulation.cc ${SOURCE_DIR}/parallel/MeshPartitioner.cc ${SOURCE_DIR}/parallel/MpiHelper.cc ${SOURCE_DIR}/parallel/ParallelDebug.cc ${SOURCE_DIR}/parallel/ParallelDofMapping.cc ${SOURCE_DIR}/parallel/ParallelProblemStat.cc ${SOURCE_DIR}/parallel/ParallelSolver.cc ${SOURCE_DIR}/parallel/PeriodicMap.cc ${SOURCE_DIR}/parallel/ParMetisPartitioner.cc ${SOURCE_DIR}/parallel/StdMpi.cc ${SOURCE_DIR}/parallel/ZoltanPartitioner.cc) if(ENABLE_PARALLEL_DOMAIN STREQUAL "PETSC") set(CMAKE_MODULE_PATH "${CMAKE_MODULE_PATH};/usr/share/cmake-2.8/Modules/;${CMAKE_SOURCE_DIR}/") set(PETSC_EXECUTABLE_RUNS ON) find_package(PETSc REQUIRED) include_directories(${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include) list(APPEND COMPILEFLAGS "-DHAVE_PARALLEL_PETSC" "-DPETSC_VERSION=${PETSC_VERSION}") list(APPEND AMDIS_INCLUDE_DIRS ${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include) list(APPEND PARALLEL_DOMAIN_AMDIS_SRC ${SOURCE_DIR}/parallel/MatrixNnzStructure.cc ${SOURCE_DIR}/parallel/ParallelCoarseSpaceSolver.cc ${SOURCE_DIR}/parallel/PetscHelper.cc ${SOURCE_DIR}/parallel/PetscSolver.cc ${SOURCE_DIR}/parallel/PetscSolverFeti.cc ${SOURCE_DIR}/parallel/PetscSolverFetiDebug.cc ${SOURCE_DIR}/parallel/PetscSolverFetiMonitor.cc ${SOURCE_DIR}/parallel/PetscSolverFetiOperators.cc ${SOURCE_DIR}/parallel/PetscSolverFetiTimings.cc ${SOURCE_DIR}/parallel/PetscSolverGlobalMatrix.cc ${SOURCE_DIR}/parallel/PetscSolverGlobalBlockMatrix.cc ${SOURCE_DIR}/parallel/PetscSolverNavierStokes.cc ${SOURCE_DIR}/parallel/PetscSolverNSCH.cc ${SOURCE_DIR}/parallel/PetscSolverCahnHilliard2.cc ${SOURCE_DIR}/parallel/PetscSolverCahnHilliard.cc ${SOURCE_DIR}/parallel/PetscSolverSchur.cc ${SOURCE_DIR}/solver/PetscTypes.cc) elseif(ENABLE_PARALLEL_DOMAIN STREQUAL "PMTL") set(MTL_INCLUDE_DIR "") find_package(MTL REQUIRED) list(APPEND COMPILEFLAGS "-DMTL_HAS_MPI" "-DHAVE_PARALLEL_MTL4") # list(APPEND PARALLEL_DOMAIN_AMDIS_SRC # ${SOURCE_DIR}/parallel/PMTL_ProblemStat.cc # ) list(APPEND AMDIS_LIBS ${MTL_LIBRARIES}) else() message(SEND_ERROR "Set the domain-decomposition version correctly.") endif() INSTALL(FILES ResolveCompilerPaths.cmake FindPackageMultipass.cmake FindPETSc.cmake DESTINATION share/amdis/) if(USE_PETSC_DEV) list(APPEND COMPILEFLAGS "-DHAVE_PETSC_DEV") endif( USE_PETSC_DEV) endif(ENABLE_PARALLEL_DOMAIN) if(ENABLE_SEQ_PETSC) find_package(MPI REQUIRED) if(MPI_FOUND) list(APPEND COMPILEFLAGS "${MPI_COMPILE_FLAGS}") include_directories(${MPI_INCLUDE_PATH}) endif(MPI_FOUND) set(CMAKE_MODULE_PATH "${CMAKE_MODULE_PATH};/usr/share/cmake-2.8/Modules/;${CMAKE_SOURCE_DIR}/") set(PETSC_EXECUTABLE_RUNS ON) find_package(PETSc REQUIRED) include_directories(${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include) list(APPEND AMDIS_INCLUDE_DIRS ${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include) list(APPEND COMPILEFLAGS "-DHAVE_SEQ_PETSC" "-DPETSC_VERSION=${PETSC_VERSION}") list(APPEND AMDIS_SRC ${SOURCE_DIR}/solver/PetscSolver.cc ${SOURCE_DIR}/solver/PetscTypes.cc) endif(ENABLE_SEQ_PETSC) if(ENABLE_UMFPACK) find_file(UMFPACK_H umfpack.h HINTS ENV CPATH /usr/include /usr/include/suitesparse /usr/include/ufsparse DOC "headerfile umfpack.h for UMFPACK") if(UMFPACK_H) get_filename_component(UMFPACK_PATH ${UMFPACK_H} PATH) include_directories(${UMFPACK_PATH} ${UFCONFIG_PATH} ${AMD_PATH}) list(APPEND COMPILEFLAGS "-DHAVE_UMFPACK=1" "-DMTL_HAS_UMFPACK") else() message(FATAL_ERROR "Could not find the UMFPACK header umfpack.h.") endif() SET(RPM_DEPEND_STR "blas") endif(ENABLE_UMFPACK) if(ENABLE_HYPRE) include(HYPREConfig.cmake) message("have hypre: ${HAVE_HYPRE}") if (HAVE_HYPRE) if (NOT MPI_FOUND) find_package(MPI REQUIRED) if (MPI_FOUND) list(APPEND COMPILEFLAGS "${MPI_COMPILE_FLAGS}") include_directories(${MPI_INCLUDE_PATH}) endif() endif() include_directories(${HYPRE_INCLUDE_DIRECTORIES}) list(APPEND COMPILEFLAGS "-DMTL_HAS_HYPRE") list(APPEND MYLIBS ${HYPRE_LIBRARIES} ) endif() endif(ENABLE_HYPRE) if(ENABLE_PNG) find_file(PNG_H png.h HINTS ENV CPATH /usr/include DOC "headerfile png.h for PNG-READER") if(PNG_H) get_filename_component(PNG_PATH ${PNG_H} PATH) include_directories(${PNG_PATH}) list(APPEND COMPILEFLAGS "-DHAVE_PNG=1") else() message(FATAL_ERROR "Could not find the PNG header png.h.") endif() endif(ENABLE_PNG) if(ENABLE_COMPRESSION) list(APPEND COMPILEFLAGS "-DHAVE_COMPRESSION=1") endif(ENABLE_COMPRESSION) if(NOT ENABLE_OUTPUT) message(WARNING "AMDiS cout output disabled!") list(APPEND COMPILEFLAGS "-DSUPPRESS_OUTPUT") endif(NOT ENABLE_OUTPUT) if(ENABLE_BDDCML) SET(BDDCML_LINK_LIST "" CACHE STRING "Further libraries to be linked with BDDCML") find_file(BDDCML_H bddcml_interface_c.h HINTS ENV CPATH DOC "Header bddcml_interface_c.h for the BDDCML library.") if(BDDCML_H) get_filename_component(BDDCML_PATH ${BDDCML_H} PATH) include_directories(${BDDCML_PATH}) list(APPEND COMPILEFLAGS "-DHAVE_BDDC_ML=1") list(APPEND COMPILEFLAGS "-DAdd_") else() message(FATAL_ERROR "Could not find BDDCML headers.") endif() find_library(BDDCML_LIB bddcml HINTS ENV LIBRARY_PATH DOC "BDDCML library") if(BDDCML_LIB) list(APPEND AMDIS_LIBS ${BDDCML_LIB}) else() message(FATAL_ERROR "Could not find the BDDCML library") endif() find_file(BLOPEX_PATH blopex HINTS ENV CPATH DOC "Path to BLOPEX library.") endif(ENABLE_BDDCML) if(ENABLE_EXTENSIONS) option(ENABLE_BASE_PROBLEMS "Use base_problems" true) find_path(EXTENSIONS_DIR NAMES Helpers.h HINTS ${CMAKE_CURRENT_SOURCE_DIR}/../extensions DOC "Path to AMDiS extensions.") if (EXTENSIONS_DIR) if (NOT EXISTS ${EXTENSIONS_DIR}/Helpers.h OR NOT EXISTS ${EXTENSIONS_DIR}/base_problems/BaseProblem.h) message(FATAL_ERROR "Wrong extensions directory! Directory must contain the 'Helpers.h' and the subdirectory 'base_problems'") else() SET(EXTENSIONS_SRC ${EXTENSIONS_DIR}/Helpers.cc ${EXTENSIONS_DIR}/BackgroundMesh.cc ${EXTENSIONS_DIR}/GeometryTools.cc ${EXTENSIONS_DIR}/POperators.cc ${EXTENSIONS_DIR}/SingularDirichletBC2.cc ${EXTENSIONS_DIR}/time/ExtendedRosenbrockStationary.cc ${EXTENSIONS_DIR}/pugixml/src/pugixml.cpp) if(ENABLE_SEQ_PETSC) list(APPEND EXTENSIONS_SRC ${EXTENSIONS_DIR}/preconditioner/PetscPreconPfc.cc ${EXTENSIONS_DIR}/preconditioner/PetscPreconPfcDiag.cc ${EXTENSIONS_DIR}/preconditioner/PetscPreconCahnHilliard.cc) endif(ENABLE_SEQ_PETSC) if(ENABLE_PARALLEL_DOMAIN) list(APPEND EXTENSIONS_SRC # ${EXTENSIONS_DIR}/preconditioner/PetscSolverNavierStokes2.cc ${EXTENSIONS_DIR}/preconditioner/PetscSolverPfc.cc ${EXTENSIONS_DIR}/preconditioner/PetscSolverPfc_diag.cc) endif(ENABLE_PARALLEL_DOMAIN) list(APPEND COMPILEFLAGS "-DHAVE_EXTENSIONS=1") list(APPEND AMDIS_INCLUDE_DIRS ${EXTENSIONS_DIR}) list(APPEND AMDIS_INCLUDE_DIRS ${EXTENSIONS_DIR}/time) list(APPEND AMDIS_INCLUDE_DIRS ${EXTENSIONS_DIR}/nanoflann) list(APPEND AMDIS_INCLUDE_DIRS ${EXTENSIONS_DIR}/pugixml/src) if(WIN32) add_library(extensions STATIC ${EXTENSIONS_SRC}) else() add_library(extensions SHARED ${EXTENSIONS_SRC}) endif() list(APPEND AMDIS_LIBS extensions) FILE(GLOB HEADERS "${EXTENSIONS_DIR}/*.h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/extensions/) FILE(GLOB HEADERS "${EXTENSIONS_DIR}/*.hh") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/extensions/) list(APPEND deb_add_dirs "include/amdis/extensions") FILE(GLOB HEADERS "${EXTENSIONS_DIR}/time/*.h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/extensions/time/) FILE(GLOB HEADERS "${EXTENSIONS_DIR}/time/*.hh") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/extensions/time/) FILE(GLOB HEADERS "${EXTENSIONS_DIR}/preconditioner/*.h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/extensions/preconditioner/) FILE(GLOB HEADERS "${EXTENSIONS_DIR}/preconditioner/*.hh") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/extensions/preconditioner/) list(APPEND deb_add_dirs "include/amdis/extensions/time") FILE(GLOB HEADERS "${EXTENSIONS_DIR}/nanoflann/*.hpp") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/extensions/nanoflann/) list(APPEND deb_add_dirs "include/amdis/extensions/nanoflann") FILE(GLOB HEADERS "${EXTENSIONS_DIR}/pugixml/src/*.hpp") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/extensions/pugixml/) list(APPEND deb_add_dirs "include/amdis/extensions/pugixml") install(TARGETS extensions DESTINATION lib/amdis/ ) # === baseProblems ==================================================================== if(ENABLE_BASE_PROBLEMS) SET(BASE_PROBLEMS_SRC ${EXTENSIONS_DIR}/base_problems/CahnHilliard.cc ${EXTENSIONS_DIR}/base_problems/CahnHilliard_RB.cc ${EXTENSIONS_DIR}/base_problems/CahnHilliardNavierStokes.cc ${EXTENSIONS_DIR}/base_problems/CahnHilliardNavierStokes_RB.cc ${EXTENSIONS_DIR}/base_problems/CahnHilliardNavierStokes_TwoPhase.cc ${EXTENSIONS_DIR}/base_problems/CahnHilliardNavierStokes_TwoPhase_RB.cc ${EXTENSIONS_DIR}/base_problems/DiffuseDomainFsi.cc ${EXTENSIONS_DIR}/base_problems/LinearElasticity.cc ${EXTENSIONS_DIR}/base_problems/LinearElasticityPhase.cc # ${EXTENSIONS_DIR}/base_problems/NavierStokes_Chorin.cc ${EXTENSIONS_DIR}/base_problems/NavierStokesCahnHilliard.cc # ${EXTENSIONS_DIR}/base_problems/NavierStokesPhase_Chorin.cc ${EXTENSIONS_DIR}/base_problems/NavierStokesPhase_TaylorHood.cc ${EXTENSIONS_DIR}/base_problems/NavierStokes_TaylorHood.cc ${EXTENSIONS_DIR}/base_problems/NavierStokes_TaylorHood_RB.cc ${EXTENSIONS_DIR}/base_problems/NavierStokes_TH_MultiPhase.cc ${EXTENSIONS_DIR}/base_problems/NavierStokes_TH_MultiPhase_RB.cc ${EXTENSIONS_DIR}/base_problems/PhaseFieldCrystal.cc ${EXTENSIONS_DIR}/base_problems/PhaseFieldCrystal_Phase.cc ${EXTENSIONS_DIR}/base_problems/PhaseFieldCrystal_RB.cc ${EXTENSIONS_DIR}/base_problems/PolarizationField.cc ${EXTENSIONS_DIR}/base_problems/QuasiCrystal.cc ${EXTENSIONS_DIR}/base_problems/QuasiCrystal_RB.cc # ${EXTENSIONS_DIR}/base_problems/VacancyPhaseFieldCrystal.cc ) list(APPEND COMPILEFLAGS "-DHAVE_BASE_PROBLEMS=1") list(APPEND AMDIS_INCLUDE_DIRS ${EXTENSIONS_DIR}/base_problems) if(WIN32) add_library(base_problems STATIC ${BASE_PROBLEMS_SRC}) else() add_library(base_problems SHARED ${BASE_PROBLEMS_SRC}) endif() list(APPEND AMDIS_LIBS base_problems) FILE(GLOB HEADERS "${EXTENSIONS_DIR}/base_problems/*.h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/base_problems/) FILE(GLOB HEADERS "${EXTENSIONS_DIR}/base_problems/*.hh") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/base_problems/) list(APPEND deb_add_dirs "include/amdis/base_problems") install(TARGETS base_problems DESTINATION lib/amdis/ ) endif(ENABLE_BASE_PROBLEMS) endif() endif() endif(ENABLE_EXTENSIONS) if(ENABLE_OPENMP) if(CMAKE_CXX_COMPILER MATCHES ".*icpc") list(APPEND COMPILEFLAGS "-openmp") else() list(APPEND COMPILEFLAGS "-fopenmp") endif() endif(ENABLE_OPENMP) SET(COMPOSITE_SOURCE_DIR ${SOURCE_DIR}/compositeFEM) SET(COMPOSITE_FEM_SRC ${COMPOSITE_SOURCE_DIR}/CFE_Integration.cc ${COMPOSITE_SOURCE_DIR}/CFE_NormAndErrorFcts.cc ${COMPOSITE_SOURCE_DIR}/CompositeFEMMethods.cc ${COMPOSITE_SOURCE_DIR}/CompositeFEMOperator.cc ${COMPOSITE_SOURCE_DIR}/LevelSetAdaptMesh.cc ${COMPOSITE_SOURCE_DIR}/PenaltyOperator.cc ${COMPOSITE_SOURCE_DIR}/ElementLevelSet.cc ${COMPOSITE_SOURCE_DIR}/SubPolytope.cc ${COMPOSITE_SOURCE_DIR}/SubElementAssembler.cc ) set(REINIT_SOURCE_DIR ${SOURCE_DIR}/reinit) file(GLOB REINIT_SRC ${REINIT_SOURCE_DIR}/*.cc) include_directories(${REINIT_SOURCE_DIR}) #muparser includes set(MUPARSER_SOURCE_DIR ${AMDIS_SOURCE_DIR}/lib/muparser_v134) file(GLOB MUPARSER_SRC ${MUPARSER_SOURCE_DIR}/src/*.cpp) list(APPEND AMDIS_INCLUDE_DIRS ${MUPARSER_SOURCE_DIR}/include) #mtl4 includes list(APPEND AMDIS_INCLUDE_DIRS ${MTL_INCLUDE_DIR}) #include_directories(${MTL_INCLUDE_DIR}) list(APPEND AMDIS_INCLUDE_DIRS ${SOURCE_DIR}) #include_directories(${SOURCE_DIR}) include_directories(${AMDIS_INCLUDE_DIRS}) if(WIN32) add_library(amdis STATIC ${AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC}) add_library(compositeFEM STATIC ${COMPOSITE_FEM_SRC}) add_library(reinit STATIC ${REINIT_SRC}) add_library(muparser STATIC ${MUPARSER_SRC}) else() add_library(amdis SHARED ${AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC}) add_library(compositeFEM SHARED ${COMPOSITE_FEM_SRC}) add_library(reinit SHARED ${REINIT_SRC}) add_library(muparser SHARED ${MUPARSER_SRC}) endif() #target_link_libraries(compositeFEM amdis) #target_link_libraries(reinit amdis) list(APPEND AMDIS_LIBS amdis ${Boost_LIBRARIES}) if(WIN32) list(APPEND COMPILEFLAGS "-D_SCL_SECURE_NO_WARNINGS" "-D_CRT_SECURE_NO_WARNINGS") endif(WIN32) if (ENABLE_CXX11) list(APPEND COMPILEFLAGS "-DHAS_CXX11=1") if (${CMAKE_VERSION} VERSION_GREATER "3.0") set_property(TARGET "amdis" PROPERTY CXX_STANDARD 11) set_property(TARGET "compositeFEM" PROPERTY CXX_STANDARD 11) set_property(TARGET "reinit" PROPERTY CXX_STANDARD 11) set_property(TARGET "muparser" PROPERTY CXX_STANDARD 11) set_property(TARGET "amdis" PROPERTY CXX_STANDARD_REQUIRED ON) set_property(TARGET "compositeFEM" PROPERTY CXX_STANDARD_REQUIRED ON) set_property(TARGET "reinit" PROPERTY CXX_STANDARD_REQUIRED ON) set_property(TARGET "muparser" PROPERTY CXX_STANDARD_REQUIRED ON) else() list(APPEND COMPILEFLAGS "-std=c++11") endif() else () list(APPEND COMPILEFLAGS "-DHAS_CXX11=0") endif (ENABLE_CXX11) if(CMAKE_SYSTEM_NAME MATCHES Darwin) if(CMAKE_COMPILER_IS_GNUCXX OR ${CMAKE_CXX_COMPILER_ID} STREQUAL Clang) SET(CMAKE_SHARED_LIBRARY_CREATE_C_FLAGS "${CMAKE_SHARED_LIBRARY_CREATE_C_FLAGS} -flat_namespace -single_module -undefined dynamic_lookup") SET(CMAKE_SHARED_LIBRARY_CREATE_CXX_FLAGS "${CMAKE_SHARED_LIBRARY_CREATE_CXX_FLAGS} -flat_namespace -single_module -undefined dynamic_lookup") set(CMAKE_C_LINK_FLAGS "${CMAKE_C_LINK_FLAGS} -bind_at_load -m64") set(CMAKE_CXX_LINK_FLAGS "${CMAKE_CXX_LINK_FLAGS} -bind_at_load -m64") endif() endif() message("compileflags: ${COMPILEFLAGS}") #SET_TARGET_PROPERTIES(amdis PROPERTIES COMPILE_FLAGS "${COMPILEFLAGS}") add_definitions(${COMPILEFLAGS}) if(ENABLE_MARMOT) Message("please set marmotcc manually") endif(ENABLE_MARMOT) #dont change this destination. the GUI depends on it to guess the buildsystem FILE(GLOB HEADERS "${SOURCE_DIR}/*.h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/) list(APPEND deb_add_dirs "include/amdis") FILE(GLOB HEADERS "${SOURCE_DIR}/config/*.h*") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/config/) list(APPEND deb_add_dirs "include/amdis/config") FILE(GLOB HEADERS "${SOURCE_DIR}/*.hh") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/) FILE(GLOB HEADERS "${SOURCE_DIR}/*.hpp") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/) FILE(GLOB HEADERS "${SOURCE_DIR}/parallel/*.h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/parallel/) list(APPEND deb_add_dirs "include/amdis/parallel") FILE(GLOB HEADERS "${SOURCE_DIR}/nonlin/*.h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/nonlin/) list(APPEND deb_add_dirs "include/amdis/nonlin") FILE(GLOB HEADERS "${SOURCE_DIR}/est/*.h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/est/) list(APPEND deb_add_dirs "include/amdis/est") FILE(GLOB HEADERS "${SOURCE_DIR}/expressions/*.h*") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/expressions/) list(APPEND deb_add_dirs "include/amdis/expressions") FILE(GLOB HEADERS "${SOURCE_DIR}/operations/*.h*") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/operations/) list(APPEND deb_add_dirs "include/amdis/operations") FILE(GLOB HEADERS "${SOURCE_DIR}/traits/*.h*") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/traits/) list(APPEND deb_add_dirs "include/amdis/traits") FILE(GLOB HEADERS "${SOURCE_DIR}/utility/*.h*") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/utility/) list(APPEND deb_add_dirs "include/amdis/utility") FILE(GLOB HEADERS "${SOURCE_DIR}/time/*.h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/time/) list(APPEND deb_add_dirs "include/amdis/time") FILE(GLOB HEADERS "${SOURCE_DIR}/solver/*.h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/solver) list(APPEND deb_add_dirs "include/amdis/solver") FILE(GLOB HEADERS "${SOURCE_DIR}/solver/*.hh") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/solver) list(APPEND deb_add_dirs "include/amdis/solver") FILE(GLOB HEADERS "${SOURCE_DIR}/solver/details/*.h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/solver/details) list(APPEND deb_add_dirs "include/amdis/solver/details") FILE(GLOB HEADERS "${SOURCE_DIR}/solver/itl/*.hpp") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/solver/itl) list(APPEND deb_add_dirs "include/amdis/solver/itl") FILE(GLOB HEADERS "${SOURCE_DIR}/io/*.h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/io) list(APPEND deb_add_dirs "include/amdis/io") FILE(GLOB HEADERS "${SOURCE_DIR}/io/*.hh") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/io) FILE(GLOB HEADERS "${SOURCE_DIR}/io/detail/*h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/io/detail) list(APPEND deb_add_dirs "include/amdis/io/detail") FILE(GLOB HEADERS "${REINIT_SOURCE_DIR}/*.h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/reinit) list(APPEND deb_add_dirs "include/amdis/reinit") FILE(GLOB HEADERS "${COMPOSITE_SOURCE_DIR}/*.h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/compositeFEM) list(APPEND deb_add_dirs "include/amdis/compositeFEM") FILE(GLOB HEADERS "${MUPARSER_SOURCE_DIR}/include/*.h") INSTALL(FILES ${HEADERS} DESTINATION include/amdis/muparser) list(APPEND deb_add_dirs "include/amdis/muparser") list(APPEND deb_add_dirs "lib/amdis") install(TARGETS amdis compositeFEM reinit muparser DESTINATION lib/amdis/ ) configure_file(${AMDIS_SOURCE_DIR}/AMDISConfig.cmake.in ${AMDIS_BINARY_DIR}/AMDISConfig.cmake @ONLY ) INSTALL(FILES ${AMDIS_BINARY_DIR}/AMDISConfig.cmake DESTINATION share/amdis/) list(APPEND deb_add_dirs "share/amdis/") # INSTALL(FILES ${AMDIS_SOURCE_DIR}/AMDISUse.cmake # DESTINATION share/amdis/) FILE(GLOB CMAKE_FILES "${AMDIS_SOURCE_DIR}/*.cmake") INSTALL(FILES ${CMAKE_FILES} DESTINATION share/amdis/) #install mtl INSTALL(DIRECTORY ${AMDIS_SOURCE_DIR}/lib/mtl4/ DESTINATION include/amdis/mtl4/ FILES_MATCHING PATTERN "*.hpp" PATTERN ".svn" EXCLUDE PATTERN ".svn/*" EXCLUDE PATTERN "mtl4/libs" EXCLUDE PATTERN "mtl4/extern" EXCLUDE ) FILE(GLOB_RECURSE mtl4_files RELATIVE ${AMDIS_SOURCE_DIR}/lib/mtl4/boost/ ${AMDIS_SOURCE_DIR}/lib/mtl4/boost/*.hpp) foreach(mtl4_file in ${mtl4_files}) get_filename_component(mtl4File_path ${mtl4_file} PATH) list(APPEND deb_add_dirs "include/amdis/mtl4/boost/${mtl4File_path}") endforeach(mtl4_file) #install documentation FILE(GLOB DOCS "${AMDIS_SOURCE_DIR}/doc/*.pdf") INSTALL(FILES ${DOCS} DESTINATION share/amdis/doc) list(APPEND deb_add_dirs "share/amdis/doc") list(REMOVE_DUPLICATES deb_add_dirs) ENABLE_TESTING() INCLUDE(CTest) INCLUDE(Dart) if(NOT CTEST_MODEL) set(CTEST_MODEL "Experimental") endif() if( NOT N_TEST_PROC) set(N_TEST_PROC "8") endif() configure_file(myMake.sh.in myMake.sh @ONLY) configure_file(CTestScript.cmake.in CTestScript.cmake @ONLY) # PACKAGES # ======================================================== set(CPACK_PACKAGE_NAME "AMDIS") set(CPACK_PACKAGE_CONTACT "Andreas.Naumann@tu-dresden.de") set(CPACK_PACKAGE_VERSION "${CurrentRevision}") set(CPACK_GENERATOR "RPM" "DEB" "TGZ") set(CPACK_INSTALL_PREFIX "/usr/") set(CPACK_RESOURCE_FILE_LICENSE "${AMDIS_SOURCE_DIR}/license.opensource.txt") # library depends on boost, but boost libraries have version-number in name on some systems. # so we have to find a workaround to enforce allowed boost versions set(boost_ver ${Boost_MINOR_VERSION}) math(EXPR boost_ver_start "${Boost_MINOR_VERSION}+1") math(EXPR boost_ver_stop "${Boost_MINOR_VERSION}+10") set(boost_depends "libboost${Boost_MAJOR_VERSION}.${boost_ver}-dev (>= ${Boost_MAJOR_VERSION}.${boost_ver})") set(boost_iostreams_depends "libboost-iostreams${Boost_MAJOR_VERSION}.${boost_ver}-dev (>= ${Boost_MAJOR_VERSION}.${boost_ver})") set(boost_system_depends "libboost-system${Boost_MAJOR_VERSION}.${boost_ver}-dev (>= ${Boost_MAJOR_VERSION}.${boost_ver})") set(boost_filesystem_depends "libboost-filesystem${Boost_MAJOR_VERSION}.${boost_ver}-dev (>= ${Boost_MAJOR_VERSION}.${boost_ver})") foreach(boost_ver RANGE ${boost_ver_start} ${boost_ver_stop}) set(boost_depends "${boost_depends} | libboost${Boost_MAJOR_VERSION}.${boost_ver}-dev (>= ${Boost_MAJOR_VERSION}.${boost_ver})") set(boost_iostreams_depends "${boost_iostreams_depends} | libboost-iostreams${Boost_MAJOR_VERSION}.${boost_ver}-dev (>= ${Boost_MAJOR_VERSION}.${boost_ver})") set(boost_system_depends "${boost_system_depends} | libboost-system${Boost_MAJOR_VERSION}.${boost_ver}-dev (>= ${Boost_MAJOR_VERSION}.${boost_ver})") set(boost_filesystem_depends "${boost_filesystem_depends} | libboost-filesystem${Boost_MAJOR_VERSION}.${boost_ver}-dev (>= ${Boost_MAJOR_VERSION}.${boost_ver})") endforeach(boost_ver) configure_file(${AMDIS_SOURCE_DIR}/preinst.in ${AMDIS_BINARY_DIR}/preinst @ONLY) configure_file(${AMDIS_SOURCE_DIR}/postrm.in ${AMDIS_BINARY_DIR}/postrm @ONLY) #----Test if clang setup works---------------------------------------------------------------------- set(COMPILER_VERSION "") if("${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang") exec_program(${CMAKE_C_COMPILER} ARGS "-v" OUTPUT_VARIABLE _clang_version_info) string(REGEX REPLACE "^.*[ ]([0-9]+)\\.[0-9].*$" "\\1" CLANG_MAJOR "${_clang_version_info}") string(REGEX REPLACE "^.*[ ][0-9]+\\.([0-9]).*$" "\\1" CLANG_MINOR "${_clang_version_info}") set(COMPILER_VERSION "clang ${CLANG_MAJOR}.${CLANG_MINOR}") endif() #---Obtain the major and minor version of the GNU compiler------------------------------------------- if (CMAKE_COMPILER_IS_GNUCXX) exec_program(${CMAKE_C_COMPILER} ARGS "-dumpversion" OUTPUT_VARIABLE _gcc_version_info) string(REGEX REPLACE "^([0-9]+).*$" "\\1" GCC_MAJOR ${_gcc_version_info}) string(REGEX REPLACE "^[0-9]+\\.([0-9]+).*$" "\\1" GCC_MINOR ${_gcc_version_info}) string(REGEX REPLACE "^[0-9]+\\.[0-9]+\\.([0-9]+).*$" "\\1" GCC_PATCH ${_gcc_version_info}) if(GCC_PATCH MATCHES "\\.+") set(GCC_PATCH "") endif() if(GCC_MINOR MATCHES "\\.+") set(GCC_MINOR "") endif() if(GCC_MAJOR MATCHES "\\.+") set(GCC_MAJOR "") endif() set(COMPILER_VERSION "gcc ${_gcc_version_info}") endif() set(CPACK_RPM_PACKAGE_REQUIRES "boost-devel >= ${Boost_MAJOR_VERSION}.${Boost_MINOR_VERSION}, ${RPM_DEPEND_STR}") set(CPACK_DEBIAN_PACKAGE_DEPENDS "${boost_depends},\\n ${boost_iostreams_depends},\\n ${boost_system_depends},\\n ${boost_filesystem_depends}") set(CPACK_DEBIAN_PACKAGE_DESCRIPTION "AMDiS (Adaptive Multi-Dimensional Simulations) - a C++ library to solve partial differential equations using adaptive finite elements. The main features of AMDiS are: . - full adaptive meshes in 1D, 2D and 3D - adaptive time stepping strategies for time dependent equations - uses high performance Krylov subspace solvers from MTL4 and the direct solvers UMFPACK and Intel's Pardiso - parallelization of the overall finite element method with excelent scaling up to several thounds of processors - uses PETSc for solving parallel distributed linear systems - easy to use interface, no additional effort to run code in parallel! . The library is compiled with ${COMPILER_VERSION} and compiled/linked with boost ${Boost_MAJOR_VERSION}.${Boost_MINOR_VERSION}.${Boost_SUBMINOR_VERSION}.") set(CPACK_DEBIAN_PACKAGE_CONTROL_EXTRA "${AMDIS_BINARY_DIR}/preinst" "${AMDIS_BINARY_DIR}/postrm") include(CPack)