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Commit 289b2b9a authored by Praetorius, Simon's avatar Praetorius, Simon
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working version of dune-functions assembling

parent 7668c6b7
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dune/amdis/AdaptInfo.hpp
View file @ 289b2b9a
#pragma once
// std c++ headers
#include <algorithm>
#include <cmath>
#include <limits>
#include <string>
#include <vector>
......@@ -82,7 +84,7 @@ namespace AMDiS
public:
/// Constructor.
AdaptInfo(std::string name, int size = 1);
explicit AdaptInfo(std::string name, int size = 1);
/// Destructor.
virtual ~AdaptInfo() {}
......@@ -427,7 +429,7 @@ namespace AMDiS
if (nTimesteps > 0)
return !(timestepNumber < nTimesteps);
return !(std::abs(time - endTime) > DBL_TOL);
return !(std::abs(time - endTime) > std::numeric_limits<double>::epsilon());
}
......
dune/amdis/Assembler.inc.hpp
View file @ 289b2b9a
......@@ -4,6 +4,8 @@
#include <dune/amdis/utility/TreePath.hpp>
#include <dune/amdis/utility/Visitor.hpp>
#include <dune/amdis/Math.hpp>
namespace AMDiS {
template <class Traits>
......@@ -65,7 +67,7 @@ void Assembler<Traits>::assemble(
for (std::size_t i = 0; i < localView.size(); ++i) {
auto const row = localIndexSet.index(i);
for (std::size_t j = 0; j < localView.size(); ++j) {
if (elementMatrix(i,j) != 0.0) {
if (std::abs(elementMatrix(i,j)) > threshold<double>) {
auto const col = localIndexSet.index(j);
matrix(row,col) += elementMatrix(i,j);
}
......@@ -74,7 +76,7 @@ void Assembler<Traits>::assemble(
// add element-vector to system-vector
for (std::size_t i = 0; i < localView.size(); ++i) {
if (elementVector[i] != 0.0) {
if (std::abs(elementVector[i]) > threshold<double>) {
auto const idx = localIndexSet.index(i);
rhs[idx] += elementVector[i];
}
......
dune/amdis/CreatorMap.hpp
View file @ 289b2b9a
......@@ -2,6 +2,7 @@
// std c++ headers
#include <map>
#include <string>
// AMDiS includes
#include <dune/amdis/CreatorInterface.hpp>
......
dune/amdis/DirichletBC.hpp
View file @ 289b2b9a
#pragma once
#include <functional>
#include <list>
#include <type_traits>
#include <vector>
......
dune/amdis/FileWriter.hpp
View file @ 289b2b9a
#pragma once
#include <string>
//#include <vector>
//#include <array>
#include <memory>
#include <dune/functions/functionspacebases/lagrangebasis.hh>
......@@ -80,7 +78,8 @@ namespace AMDiS
template <class W>
void writeVertexData(Dune::TypeTree::LeafNodeTag, index_t<0>, W write)
{
using namespace Dune::Functions::BasisBuilder;
using Dune::Functions::BasisBuilder::makeBasis;
using Dune::Functions::BasisBuilder::lagrange;
auto fct = makeDiscreteFunction(basis_,treePath_,vector_);
auto p1basis = makeBasis(basis_->gridView(), lagrange<1>());
......@@ -97,7 +96,11 @@ namespace AMDiS
template <std::size_t C, class W>
void writeVertexData(Dune::TypeTree::PowerNodeTag, index_t<C>, W write)
{
using namespace Dune::Functions::BasisBuilder;
using Dune::Functions::BasisBuilder::makeBasis;
using Dune::Functions::BasisBuilder::lagrange;
using Dune::Functions::BasisBuilder::power;
using Dune::Functions::BasisBuilder::flatLexicographic;
assert( C == dow );
auto fct = makeDiscreteFunction(basis_,treePath_,vector_);
......@@ -116,78 +119,6 @@ namespace AMDiS
template <class NodeTag, std::size_t C, class W>
void writeVertexData(NodeTag, index_t<C>, W) {}
#if 0
/// default write method for time-depended data
template <class SystemVectorType>
void write(double time, SystemVectorType const& solutions)
{
vtkWriter->clear();
// copy dofvector to vertex data
forEach(range_<0, nComponents>, [this, &solutions](const auto _i)
{
this->dofVector2vertexVector(solutions, std::get<_i>(data_vectors));
vtkSeqWriter->addVertexData(std::get<_i>(data_vectors), names[_i]);
});
vtkSeqWriter->write(time/*, Dune::VTK::appendedraw*/);
}
/// default write method for stationary data
template <class SystemVectorType>
void write(SystemVectorType const& solutions)
{
vtkWriter->clear();
// copy dofvector to vertex data
forEach(range_<0, nComponents>, [this, &solutions](const auto _i)
{
this->dofVector2vertexVector(solutions, std::get<_i>(data_vectors));
vtkWriter->addVertexData(std::get<_i>(data_vectors), names[_i]);
});
vtkWriter->pwrite(filename, dir, "" /*, Dune::VTK::appendedraw*/);
}
template <class DOFVector, class Vector>
void dofVector2vertexVector(DOFVector const& dofvector, Vector& data)
{
using Geometry = typename MeshView::template Codim<0>::Geometry;
using RefElements = Dune::ReferenceElements<typename Geometry::ctype, Geometry::mydimension>;
data.resize(meshView.size(dim));
auto const& indexSet = meshView.indexSet();
auto const& feSpace = dofvector.getFeSpace();
auto localView = feSpace.localView();
auto localIndexSet = feSpace.localIndexSet();
// copy data to P1-vector
for (auto const& element : elements(meshView)) {
localView.bind(element);
localIndexSet.bind(localView);
auto const& localBasis = localView.tree().finiteElement().localBasis();
auto const& refElement = RefElements::general(element.type());
std::vector<Dune::FieldVector<double,1> > shapeValues;
std::size_t nVertices = element.subEntities(dim);
for (std::size_t i = 0; i < nVertices; ++i) {
auto const& v = element.template subEntity<dim>(i);
auto pos = refElement.position(i, dim);
localBasis.evaluateFunction(pos, shapeValues);
std::size_t idx = indexSet.index(v);
data[idx] = 0.0;
for (std::size_t j = 0; j < shapeValues.size(); ++j) {
const auto global_idx = localIndexSet.index(j);
data[idx] += dofvector[global_idx] * shapeValues[j];
}
}
}
}
#endif
private:
std::shared_ptr<GlobalBasis> basis_;
TreePath treePath_;
......
dune/amdis/FiniteElementSpaces.hpp
View file @ 289b2b9a
......@@ -39,7 +39,7 @@ namespace AMDiS
using Element = typename GridView::template Codim<0>::Entity;
public:
FiniteElementSpaces(std::shared_ptr<FeSpaces> const& feSpaces)
explicit FiniteElementSpaces(std::shared_ptr<FeSpaces> const& feSpaces)
: feSpaces_(feSpaces)
, localViews_(mapTuple([](auto const& basis) { return basis.localView(); }, *feSpaces))
, localIndexSets_(mapTuple([](auto const& basis) { return basis.localIndexSet(); }, *feSpaces))
......
dune/amdis/Flag.hpp
View file @ 289b2b9a
#pragma once
#include <cstdint>
namespace AMDiS
{
/** \ingroup Common
......@@ -15,7 +17,7 @@ namespace AMDiS
constexpr Flag() = default;
/// Constructs a Flag initialized by f
constexpr Flag(const unsigned long f)
constexpr Flag(const std::uint64_t f)
: flags(f)
{}
......@@ -52,7 +54,7 @@ namespace AMDiS
}
/// Set \ref flags
constexpr void setFlags(const unsigned long f)
constexpr void setFlags(const std::uint64_t f)
{
flags = f;
}
......@@ -64,7 +66,7 @@ namespace AMDiS
}
/// Sets \ref flags to \ref flags | f
constexpr void setFlag(const unsigned long f)
constexpr void setFlag(const std::uint64_t f)
{
flags |= f;
}
......@@ -76,7 +78,7 @@ namespace AMDiS
}
/// Sets \ref flags to \ref flags & ~f
constexpr void unsetFlag(const unsigned long f)
constexpr void unsetFlag(const std::uint64_t f)
{
flags &= ~f;
}
......@@ -87,7 +89,7 @@ namespace AMDiS
flags &= ~f.flags;
}
constexpr unsigned long getFlags() const
constexpr std::uint64_t getFlags() const
{
return flags;
}
......@@ -170,7 +172,7 @@ namespace AMDiS
protected:
/// Internal flag representation
unsigned long flags = 0;
std::uint64_t flags = 0;
};
} // end namespace AMDiS
dune/amdis/Initfile.cpp
View file @ 289b2b9a
......@@ -56,8 +56,8 @@ namespace AMDiS
test_exit(file_exists(fn),
"init-file '", fn, "' cannot be opened for reading");
using namespace boost::property_tree;
json_parser::read_json(fn, pt);
using boost::property_tree::json_parser::read_json;
read_json(fn, pt);
}
......
dune/amdis/Initfile.hpp
View file @ 289b2b9a
......@@ -265,7 +265,7 @@ namespace AMDiS
/// save singlett-data to file with filename fn
static void save(std::string /*fn*/)
{
using namespace boost::property_tree;
// using boost::property_tree::json_parser;
// json_parser::write_jason(fn, singlett().pt);
}
......
dune/amdis/LocalAssembler.hpp
View file @ 289b2b9a
......@@ -23,7 +23,7 @@ namespace AMDiS
using LocalGeometry = typename Impl::Get<LocalContext>::Geometry;
public:
LocalAssembler(int degree, FirstOrderType type = GRD_PHI)
explicit LocalAssembler(int degree, FirstOrderType type = GRD_PHI)
: degree_(degree)
, type_(type)
{}
......
dune/amdis/Math.hpp
View file @ 289b2b9a
#pragma once
#include <algorithm>
#include <cmath>
#include <cstdint>
#include <limits>
#include <string>
#include <type_traits>
#include <cmath>
#include <cfloat>
namespace AMDiS
{
......@@ -101,8 +103,12 @@ namespace AMDiS
s = "";
}
template <class T>
constexpr T threshold = T(1.e-16); //Math::sqr(std::numeric_limits<T>::epsilon());
/// Calculates factorial of i
constexpr unsigned long factorial(unsigned long i)
constexpr std::uint64_t factorial(std::uint64_t i)
{
return i <= 1 ? 1 : i * factorial(i - 1);
}
......@@ -128,8 +134,4 @@ namespace AMDiS
constexpr double m_sqrt2 = 1.41421356237309504880;
constexpr double m_sqrt1_2 = 0.70710678118654752440;
// tolerance for floating point comparison
#define DBL_TOL DBL_EPSILON
#define FLT_TOL FLT_EPSILON
} // end namespace AMDiS
dune/amdis/Mesh.hpp
View file @ 289b2b9a
#pragma once
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif
#include <array>
#include <memory>
#include <string>
#include <dune/common/filledarray.hh>
#include <dune/common/fvector.hh>
......
dune/amdis/Operator.hpp
View file @ 289b2b9a
......@@ -134,10 +134,28 @@ namespace AMDiS
{
element_ = &element;
geometry_ = &geometry;
for (auto* operatorTerm : zeroOrder)
operatorTerm->bind(element);
for (auto* operatorTerm : firstOrderGrdPhi)
operatorTerm->bind(element);
for (auto* operatorTerm : firstOrderGrdPsi)
operatorTerm->bind(element);
for (auto* operatorTerm : secondOrder)
operatorTerm->bind(element);
}
void unbind()
{
for (auto* operatorTerm : zeroOrder)
operatorTerm->unbind();
for (auto* operatorTerm : firstOrderGrdPhi)
operatorTerm->unbind();
for (auto* operatorTerm : firstOrderGrdPsi)
operatorTerm->unbind();
for (auto* operatorTerm : secondOrder)
operatorTerm->unbind();
element_ = nullptr;
geometry_ = nullptr;
}
......
dune/amdis/Operator.inc.hpp
View file @ 289b2b9a
#pragma once
#include <algorithm>
#include <list>
namespace AMDiS {
template <class GridView, class LocalContext>
......@@ -45,7 +48,7 @@ getQuadratureDegree(Dune::GeometryType t, LocalGeometry const& geometry, int ord
int maxTermDegree = 0;
for (OperatorTermType* term : *terms)
maxTermDegree = std::max(maxTermDegree, term->getDegree(t));
maxTermDegree = std::max(maxTermDegree, term->getDegree());
int degree = psiDegree_ + phiDegree_ + maxTermDegree;
if (t.isSimplex())
......
dune/amdis/OperatorTermBase.hpp
View file @ 289b2b9a
#pragma once
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif
#include <vector>
#include <type_traits>
......@@ -24,8 +20,12 @@ namespace AMDiS
static constexpr int dow = LocalContext::Geometry::coorddimension;
using QuadratureRule = QuadratureRuleFactory_t<LocalContext,double,dim>;
using Element = typename Impl::Get<LocalContext>::Entity;
public:
virtual void bind(Element const& element) = 0;
virtual void unbind() = 0;
// initialize operator-term on the current element
virtual void init(LocalContext const& element, QuadratureRule const& points) = 0;
......@@ -62,7 +62,7 @@ namespace AMDiS
// return the polynomial degree, necessary to intergrate the operator-term
// on an element accurately
virtual int getDegree(Dune::GeometryType const& t) const = 0;
virtual int getDegree() const = 0;
};
......@@ -83,16 +83,24 @@ namespace AMDiS
{
using Super = OperatorTerm<LocalContext>;
using QuadratureRule = typename Super::QuadratureRule;
using Element = typename Super::Element;
static constexpr int dow = Super::dow;
public:
/// Constructor, stores a copy of the expression `expr` and of the traits `traits`.
GenericOperatorTerm(Expression const& expr, Traits traits = {})
explicit GenericOperatorTerm(Expression const& expr, Traits traits = {})
: expr(expr)
, traits(traits)
{}
virtual void bind(Element const& element) final
{
expr.bind(element);
}
virtual void unbind() final {}
/// \brief Initialize the expression on the current (inside-)element, in the quadrature points.
/**
* This initialization does not only bind the operator-term to the inside-element,
......@@ -102,21 +110,21 @@ namespace AMDiS
* Note: For entities the expression is bound to the `element` directly, but
* for intersections, the expression is bound to inside-entity of the element.
**/
virtual void init(LocalContext const& element, QuadratureRule const& points) override
virtual void init(LocalContext const& element, QuadratureRule const& points) final
{
expr.init(get_entity(element), points);
}
/// Calculates `expr[iq] * test * trial`
virtual double eval(std::size_t iq,
Dune::FieldVector<double,1> const& test) const override
Dune::FieldVector<double,1> const& test) const final
{
return Evaluate::zot(_cat{}, traits, expr[iq], test);
}
/// Calculates `expr[iq] * test * grad(trial)`, maybe partial derivative only.
virtual double eval(std::size_t iq,
Dune::FieldVector<double,dow> const& grad_test) const override
Dune::FieldVector<double,dow> const& grad_test) const final
{
return Evaluate::fot(_cat{}, traits, expr[iq], grad_test);
}
......@@ -125,7 +133,7 @@ namespace AMDiS
/// Calculates `expr[iq] * test * trial`
virtual double eval(std::size_t iq,
Dune::FieldVector<double,1> const& test,
Dune::FieldVector<double,1> const trial) const override
Dune::FieldVector<double,1> const trial) const final
{
return Evaluate::zot(_cat{}, traits, expr[iq], test, trial);
}
......@@ -133,7 +141,7 @@ namespace AMDiS
/// Calculates `expr[iq] * test * grad(trial)`, maybe partial derivative only.
virtual double eval(std::size_t iq,
Dune::FieldVector<double,1> const& test,
Dune::FieldVector<double,dow> const& grad_trial) const override
Dune::FieldVector<double,dow> const& grad_trial) const final
{
return Evaluate::fot(_cat{}, traits, expr[iq], grad_trial, test);
}
......@@ -141,7 +149,7 @@ namespace AMDiS
/// Calculates `expr[iq] * grad(test) * trial`, maybe partial derivative only.
virtual double eval(std::size_t iq,
Dune::FieldVector<double,dow> const& grad_test,
Dune::FieldVector<double,1> const trial) const override
Dune::FieldVector<double,1> const trial) const final
{
return Evaluate::fot(_cat{}, traits, expr[iq], grad_test, trial);
}
......@@ -149,15 +157,15 @@ namespace AMDiS
/// Calculates `expr[iq] * grad(test) * grad(trial)`, maybe partial derivatives only.
virtual double eval(std::size_t iq,
Dune::FieldVector<double,dow> const& grad_test,
Dune::FieldVector<double,dow> const& grad_trial) const override
Dune::FieldVector<double,dow> const& grad_trial) const final
{
return Evaluate::sot(_cat{}, traits, expr[iq], grad_test, grad_trial);
}
/// Returns the polynomial degree of the expression
virtual int getDegree(Dune::GeometryType const& t) const override
virtual int getDegree() const final
{
return expr.getDegree(t);
return expr.getDegree();
}
private:
......
dune/amdis/ProblemInstat.hpp
View file @ 289b2b9a
#pragma once
#include <string>
#include <dune/amdis/ProblemInstatBase.hpp>
#include <dune/amdis/ProblemStat.hpp>
#include <dune/amdis/common/Utility.hpp>
......
dune/amdis/ProblemInstat.inc.hpp
View file @ 289b2b9a
#pragma once
#include "ProblemInstat.hpp"
#include <string>
#include <vector>
#include <dune/amdis/AdaptInfo.hpp>
namespace AMDiS {
......
dune/amdis/ProblemStat.hpp
View file @ 289b2b9a
#pragma once
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif
#include <tuple>
#include <string>
#include <memory>
#include <list>
#include <map>
#include <memory>
#include <string>
#include <tuple>
#include <utility>
#include <vector>
#include <dune/common/fvector.hh>
#include <dune/common/fmatrix.hh>
......@@ -83,7 +81,7 @@ namespace AMDiS
* Parameters read by ProblemStat, with name 'PROB'
* PROB->names: \ref componentNames
**/
ProblemStat(std::string name)
explicit ProblemStat(std::string name)
: StandardProblemIteration(dynamic_cast<ProblemStatBase&>(*this))
, name(name)
{
......@@ -94,10 +92,10 @@ namespace AMDiS
/// Constructor taking additionally a reference to a mesh that is used
/// instead of the default created mesh, \ref ProblemStat
ProblemStat(std::string name, Grid& grid)
ProblemStat(std::string name, Grid* gridPtr)
: ProblemStat(name)
{
this->grid = std::shared_ptr<Grid>(&grid, optional_delete(false));
this->grid = std::shared_ptr<Grid>(gridPtr, optional_delete(false));
componentGrids.resize(nComponents, this->grid.get());
gridName = "";
......
dune/amdis/ProblemStat.inc.hpp
View file @ 289b2b9a
#pragma once
#include <map>
#include <string>
#include <utility>
#include <dune/typetree/childextraction.hh>
#include <dune/amdis/AdaptInfo.hpp>
......
dune/amdis/StandardProblemIteration.hpp
View file @ 289b2b9a
......@@ -17,7 +17,7 @@ namespace AMDiS
{
public:
/// constructor
StandardProblemIteration(ProblemStatBase& prob)
explicit StandardProblemIteration(ProblemStatBase& prob)
: problem(prob)
{}
......
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