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Commit a51fb501 authored by Till Korten's avatar Till Korten
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Merge branch 'main' of gitlab.mn.tu-dresden.de:bia-pol/singularity-devbio-napari

parents c1bb2eae 4dc0097e
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......@@ -8,8 +8,9 @@ Run jupyter kernels inside custom singularity containers on an HPC cluster that
```bash
git clone https://gitlab.mn.tu-dresden.de/bia-pol/singularity-devbio-napari.git
cd singularity-devbio-napari
./install.sh
./install.sh <version>
```
Replace `<version>` with the version you want to install. For example: `v0.1.5`
3. You should now see an additional button named `devbio napari` on the jupyter lab home screen. Note: you may need to reload the page first.
4. Klick on that button to start a jupyter notebook inside the singularity container. Note that the first command execution will take a while because of the additional time it takes to start the singularity container.
......
# Creating user-specific singularity images
1. clone the repository: `git clone https://gitlab.mn.tu-dresden.de/bia-pol/singularity-devbio-napari.git`
1. create a new branch: `git checkout -b <user-name>_branch`
2. adapt `environment.yml` to the user's needs
3. commit your changes: `git commit -am "changed environment to meet <user-name>'s needs"`
......
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