cmake port of current amdis

AMDiS/CMakeLists.txt

+project("AMDiS")
+
+cmake_minimum_required(VERSION 2.6)
+
+#needs: --enable-debug, enable-intel --enable-openmp --enable-parmetis --enable-parallel-domain --enable-umfpack --enable-mkl --enable-boost --enable-marmot
+
+option(ENABLE_DEBUG "debug" false)
+#option(ENABLE_INTEL "use intel compiler" false)
+option(ENABLE_OPENMP "use openmp" false)
+option(ENABLE_PARMETIS "use partion of unity and enable parmetis" false)
+option(ENABLE_PARALLEL_DOMAIN "use parallel domain decomposition" false)
+SET(PETSC_DIR "" CACHE STRING "Petsc directory for parallel domain decomposition" )
+SET(PETSC_ARCH "" CACHE STRING "Petsc architecture")
+option(ENABLE_UMFPACK "use umfpack solver" false)
+option(ENABLE_MKL "use the mkl" false)
+SET(MKL_DIR "" CACHE STRING "MKL directory")
+option(ENABLE_DUNE "use dune" false)
+SET(DUNE_DIR "" CACHE STRING "Dune directory")
+option(ENABLE_BOOST "use the boost library" false)
+option(ENABLE_MARMOT "use marmot" false)
+option(ENABLE_GUI "compile the gui" false)
+#option(ENABLE_TESTS "compile the tests" false)
+SET(ENABLE_TESTS false)
+
+if(ENABLE_INTEL)
+	Message("please set the icc manually")
+	INCLUDE (CMakeForceCompiler)
+	CMAKE_FORCE_C_COMPILER(icc "intel C compiler")
+	CMAKE_FORCE_CXX_COMPILER(icpc "intel C++ compiler")
+	#SET(CMAKE_C_COMPILER "icc")
+endif(ENABLE_INTEL)
+
+SET(LIB_DIR ./lib)
+SET(SOURCE_DIR ./src)
+SET(AMDIS_SRC ${SOURCE_DIR}/DOFIndexed.cc ${SOURCE_DIR}/GNUPlotWriter.cc ${SOURCE_DIR}/VertexVector.cc 
+	      ${SOURCE_DIR}/PeriodicBC.cc ${SOURCE_DIR}/Recovery.cc ${SOURCE_DIR}/RecoveryEstimator.cc 
+	      ${SOURCE_DIR}/ResidualEstimator.cc ${SOURCE_DIR}/Cholesky.cc ${SOURCE_DIR}/AdaptBase.cc
+	      ${SOURCE_DIR}/StandardProblemIteration.cc ${SOURCE_DIR}/ProblemScal.cc ${SOURCE_DIR}/ProblemVec.cc 
+	      ${SOURCE_DIR}/ProblemVecDbg.cc ${SOURCE_DIR}/DualTraverse.cc ${SOURCE_DIR}/ElementData.cc 
+	      ${SOURCE_DIR}/ComponentTraverseInfo.cc ${SOURCE_DIR}/CreatorMap.cc ${SOURCE_DIR}/ProblemInterpolScal.cc 
+	      ${SOURCE_DIR}/ProblemInterpolVec.cc ${SOURCE_DIR}/MacroReader.cc ${SOURCE_DIR}/ValueReader.cc 
+	      ${SOURCE_DIR}/Projection.cc ${SOURCE_DIR}/SubAssembler.cc ${SOURCE_DIR}/ZeroOrderAssembler.cc 
+	      ${SOURCE_DIR}/FirstOrderAssembler.cc ${SOURCE_DIR}/SecondOrderAssembler.cc ${SOURCE_DIR}/Assembler.cc 
+	      ${SOURCE_DIR}/AdaptInfo.cc ${SOURCE_DIR}/Marker.cc ${SOURCE_DIR}/SurfaceQuadrature.cc 
+	      ${SOURCE_DIR}/LeafData.cc ${SOURCE_DIR}/BoundaryManager.cc ${SOURCE_DIR}/DirichletBC.cc 
+	      ${SOURCE_DIR}/RobinBC.cc  ${SOURCE_DIR}/FileWriter.cc ${SOURCE_DIR}/ElementFileWriter.cc 
+	      ${SOURCE_DIR}/ElInfo.cc ${SOURCE_DIR}/ElInfoStack.cc ${SOURCE_DIR}/OperatorTerm.cc 
+              ${SOURCE_DIR}/ZeroOrderTerm.cc ${SOURCE_DIR}/FirstOrderTerm.cc ${SOURCE_DIR}/SecondOrderTerm.cc 
+              ${SOURCE_DIR}/Operator.cc ${SOURCE_DIR}/Mesh.cc ${SOURCE_DIR}/MeshStructure.cc 
+	      ${SOURCE_DIR}/AdaptStationary.cc  ${SOURCE_DIR}/AdaptInstationary.cc
+	      ${SOURCE_DIR}/DOFVector.cc ${SOURCE_DIR}/Estimator.cc ${SOURCE_DIR}/ProblemInstat.cc ${SOURCE_DIR}/ProblemNonLin.cc 
+	      ${SOURCE_DIR}/NonLinUpdater.cc ${SOURCE_DIR}/QPsiPhi.cc ${SOURCE_DIR}/BasisFunction.cc ${SOURCE_DIR}/Boundary.cc 
+	      ${SOURCE_DIR}/CoarseningManager.cc ${SOURCE_DIR}/CoarseningManager1d.cc ${SOURCE_DIR}/CoarseningManager2d.cc 
+	      ${SOURCE_DIR}/CoarseningManager3d.cc ${SOURCE_DIR}/DOFAdmin.cc ${SOURCE_DIR}/DOFMatrix.cc ${SOURCE_DIR}/Element.cc 
+	      ${SOURCE_DIR}/ElInfo1d.cc ${SOURCE_DIR}/ElInfo2d.cc ${SOURCE_DIR}/ElInfo3d.cc ${SOURCE_DIR}/FiniteElemSpace.cc 
+	      ${SOURCE_DIR}/FixVec.cc ${SOURCE_DIR}/Global.cc ${SOURCE_DIR}/Lagrange.cc ${SOURCE_DIR}/Line.cc 
+	      ${SOURCE_DIR}/MacroElement.cc ${SOURCE_DIR}/MacroWriter.cc ${SOURCE_DIR}/Parameters.cc ${SOURCE_DIR}/Parametric.cc 
+	      ${SOURCE_DIR}/Quadrature.cc ${SOURCE_DIR}/RCNeighbourList.cc ${SOURCE_DIR}/RefinementManager.cc 
+	      ${SOURCE_DIR}/RefinementManager1d.cc ${SOURCE_DIR}/RefinementManager2d.cc ${SOURCE_DIR}/RefinementManager3d.cc 
+	      ${SOURCE_DIR}/Tetrahedron.cc ${SOURCE_DIR}/Traverse.cc ${SOURCE_DIR}/TraverseParallel.cc ${SOURCE_DIR}/Triangle.cc 
+	      ${SOURCE_DIR}/TecPlotWriter.cc ${SOURCE_DIR}/ValueWriter.cc ${SOURCE_DIR}/VtkWriter.cc ${SOURCE_DIR}/PngWriter.cc 
+	      ${SOURCE_DIR}/PovrayWriter.cc ${SOURCE_DIR}/DataCollector.cc ${SOURCE_DIR}/ScalableQuadrature.cc 
+	      ${SOURCE_DIR}/SubElInfo.cc ${SOURCE_DIR}/parallel/InteriorBoundary.cc ${SOURCE_DIR}/ElementDofIterator.cc 
+	      ${SOURCE_DIR}/Debug.cc
+	      )
+
+if(ENABLE_PARMETIS)
+	find_package(MPI REQUIRED)
+	INCLUDE (CMakeForceCompiler)	
+	CMAKE_FORCE_C_COMPILER(mpicc "MPI C compiler")
+	CMAKE_FORCE_CXX_COMPILER(mpiCC "MPI C++ compiler")
+
+	include_directories( ${LIB_DIR}/ParMetis-3.1)
+	SET(PARALLEL_AMDIS_SRC  ${SOURCE_DIR}/ConditionalEstimator.cc ${SOURCE_DIR}/ConditionalMarker.cc 
+				${SOURCE_DIR}/ParallelProblem.cc ${SOURCE_DIR}/ParMetisPartitioner.cc 
+				${SOURCE_DIR}/PollutionError.cc)
+	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PARALLEL_AMDIS=1")
+endif(ENABLE_PARMETIS)
+
+if(ENABLE_PARALLEL_DOMAIN)
+	include_directories(${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include)
+	SET(PARALLEL_DOMAIN_AMDIS_SRC
+		${SOURCE_DIR}/parallel/ParallelDomainBase.cc 
+		${SOURCE_DIR}/parallel/StdMpi.cc
+		${SOURCE_DIR}/parallel/ParallelDomainDbg.cc
+		${SOURCE_DIR}/parallel/GlobalMatrixSolver.cc
+		${SOURCE_DIR}/parallel/MpiHelper.cc)
+	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PARALLEL_DOMAIN_AMDIS=1")
+endif(ENABLE_PARALLEL_DOMAIN)
+
+if(ENABLE_DEBUG)
+	SET(COMPILEFLAGS "${COMPILEFLAGS} -g -O0 -DDEBUG=1")
+endif(ENABLE_DEBUG)
+
+if(ENABLE_OPENMP)
+	if(ENABLE_INTEL)
+		SET(COMPILEFLAGS "${COMPILEFLAGS} -openmp")
+	else(ENABLE_INTEL)
+		SET(COMPILEFLAGS "${COMPILEFLAGS} -fopenmp")
+	endif(ENABLE_INTEL)
+endif(ENABLE_OPENMP)
+
+if(ENABLE_UMFPACK)
+	include_directories(${LIB_DIR}/UFconfig ${LIB_DIR}/AMD/Include ${LIB_DIR}/UMFPACK/Include)
+	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_UMFPACK=1 -DMTL_HAS_UMFPACK")
+endif(ENABLE_UMFPACK)
+
+if(ENABLE_MKL)
+	include_directories(${MKL_DIR})
+	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_MKL=1")
+endif(ENABLE_MKL)
+
+if(ENABLE_DUNE)
+	include_directories(${DUNE_DIR})
+	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_DUNE=1")
+endif(ENABLE_DUNE)
+
+if(ENABLE_BOOST)
+	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_BOOST=1")
+endif(ENABLE_BOOST)
+
+SET(COMPOSITE_SOURCE_DIR compositeFEM/src)
+SET(COMPOSITE_FEM_SRC ${COMPOSITE_SOURCE_DIR}/CFE_Integration.cc ${COMPOSITE_SOURCE_DIR}/CFE_NormAndErrorFcts.cc 
+		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMMethods.cc ${COMPOSITE_SOURCE_DIR}/LevelSetAdaptMesh.cc 
+		      ${COMPOSITE_SOURCE_DIR}/PenaltyOperator.cc ${COMPOSITE_SOURCE_DIR}/ElementLevelSet.cc 
+		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMOperator.cc ${COMPOSITE_SOURCE_DIR}/SubPolytope.cc 
+		      ${COMPOSITE_SOURCE_DIR}/SubElementAssembler.cc )
+
+#mtl4 includes
+include_directories(${LIB_DIR}/mtl4)
+include_directories(${SOURCE_DIR})
+
+add_library(amdis SHARED ${AMDIS_SRC} ${PARALLEL_AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC})
+add_library(compositeFEM SHARED ${COMPOSITE_FEM_SRC})
+
+
+SET_TARGET_PROPERTIES(amdis PROPERTIES COMPILE_FLAGS "${COMPILEFLAGS}")
+if(ENABLE_MARMOT)
+	Message("please set marmotcc manually")
+endif(ENABLE_MARMOT)
+
+install(TARGETS amdis compositeFEM 
+	LIBRARY DESTINATION lib )
+
+if(ENABLE_GUI)
+	add_subdirectory(other/tools/amdis_gui)
+endif(ENABLE_GUI)
+
+if(ENABLE_TESTS)
+#ENABLE_TESTING()
+#add_test(demo_test run_test.sh)
+
+#add_test(demo_test ${CMAKE_CTEST_COMMAND} --build-and-test "${CMAKE_SOURCE_DIR}/test/demo_test" "${CMAKE_BINARY_DIR}/test/demo_test" --build-generator "${CMAKE_GENERATOR}" --build-makeprogram "${CMAKE_MAKE_PROGRAM}" "${CMAKE_BINARY_DIR}/test/demo_test")
+endif(ENABLE_TESTS)