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Commit ed38dcb2 authored by Thomas Witkowski's avatar Thomas Witkowski
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Very first working version of a FETI-DP solver.

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AMDiS/src/parallel/PetscSolverFeti.cc
+ 501
− 23
View file @ ed38dcb2
......@@ -20,6 +20,56 @@ namespace AMDiS {
#ifdef HAVE_PETSC_DEV
// y = mat * x
int petscMultMatSchurPrimal(Mat mat, Vec x, Vec y)
{
// S_PiPi = K_PiPi - K_PiB inv(K_BB) K_BPi
void *ctx;
MatShellGetContext(mat, &ctx);
PetscSchurPrimalData* data = static_cast<PetscSchurPrimalData*>(ctx);
MatMult(*(data->mat_b_primal), x, data->tmp_vec_b);
KSPSolve(*(data->ksp_b), data->tmp_vec_b, data->tmp_vec_b);
MatMult(*(data->mat_primal_b), data->tmp_vec_b, data->tmp_vec_primal);
MatMult(*(data->mat_primal_primal), x, y);
VecAXPBY(y, -1.0, 1.0, data->tmp_vec_primal);
return 0;
}
// y = mat * x
int petscMultMatFeti(Mat mat, Vec x, Vec y)
{
// F = L inv(K_BB) trans(L) + L inv(K_BB) K_BPi inv(S_PiPi) K_PiB inv(K_BB) trans(L)
void *ctx;
MatShellGetContext(mat, &ctx);
PetscFetiData* data = static_cast<PetscFetiData*>(ctx);
// y = L inv(K_BB) trans(L) x
MatMultTranspose(*(data->mat_lagrange), x, data->tmp_vec_b);
KSPSolve(*(data->ksp_b), data->tmp_vec_b, data->tmp_vec_b);
MatMult(*(data->mat_lagrange), data->tmp_vec_b, y);
// tmp_vec_primal = inv(S_PiPi) K_PiB inv(K_BB) trans(L)
MatMult(*(data->mat_primal_b), data->tmp_vec_b, data->tmp_vec_primal);
KSPSolve(*(data->ksp_schur_primal), data->tmp_vec_primal, data->tmp_vec_primal);
// tmp_vec_lagrange = L inv(K_BB) K_BPi tmp_vec_primal
// = L inv(K_BB) K_BPi inv(S_PiPi) K_PiB inv(K_BB) trans(L)
MatMult(*(data->mat_b_primal), data->tmp_vec_primal, data->tmp_vec_b);
KSPSolve(*(data->ksp_b), data->tmp_vec_b, data->tmp_vec_b);
MatMult(*(data->mat_lagrange), data->tmp_vec_b, data->tmp_vec_lagrange);
VecAXPBY(y, 1.0, 1.0, data->tmp_vec_lagrange);
return 0;
}
void PetscSolverFeti::updateDofData()
{
FUNCNAME("PetscSolverFeti::updateDofData()");
......@@ -62,7 +112,7 @@ namespace AMDiS {
nOverallPrimals = 0;
int rStartPrimals = 0;
rStartPrimals = 0;
mpi::getDofNumbering(meshDistributor->getMpiComm(),
nRankPrimals, rStartPrimals, nOverallPrimals);
......@@ -226,7 +276,7 @@ namespace AMDiS {
}
nOverallLagrange = 0;
int rStartLagrange = 0;
rStartLagrange = 0;
mpi::getDofNumbering(meshDistributor->getMpiComm(),
nRankLagrange, rStartLagrange, nOverallLagrange);
......@@ -353,6 +403,197 @@ namespace AMDiS {
}
void PetscSolverFeti::createSchurPrimalKsp(int nComponents)
{
FUNCNAME("PetscSolverFeti::createSchurPrimal()");
petscSchurPrimalData.mat_primal_primal = &mat_primal_primal;
petscSchurPrimalData.mat_primal_b = &mat_primal_b;
petscSchurPrimalData.mat_b_primal = &mat_b_primal;
petscSchurPrimalData.ksp_b = &ksp_b;
MatGetVecs(mat_b_b,
PETSC_NULL, &(petscSchurPrimalData.tmp_vec_b));
MatGetVecs(mat_primal_primal,
PETSC_NULL, &(petscSchurPrimalData.tmp_vec_primal));
MatCreateShell(PETSC_COMM_WORLD,
nRankPrimals * nComponents, nRankPrimals * nComponents,
nOverallPrimals * nComponents, nOverallPrimals * nComponents,
&petscSchurPrimalData,
&mat_schur_primal);
MatShellSetOperation(mat_schur_primal, MATOP_MULT,
(void(*)(void))petscMultMatSchurPrimal);
KSPCreate(PETSC_COMM_WORLD, &ksp_schur_primal);
KSPSetOperators(ksp_schur_primal, mat_schur_primal, mat_schur_primal, SAME_NONZERO_PATTERN);
KSPSetOptionsPrefix(ksp_schur_primal, "solver_sp_");
KSPSetFromOptions(ksp_schur_primal);
}
void PetscSolverFeti::destroySchurPrimalKsp()
{
FUNCNAME("PetscSolverFeti::destroySchurPrimal()");
petscSchurPrimalData.mat_primal_primal = PETSC_NULL;
petscSchurPrimalData.mat_primal_b = PETSC_NULL;
petscSchurPrimalData.mat_b_primal = PETSC_NULL;
petscSchurPrimalData.ksp_b = PETSC_NULL;
VecDestroy(petscSchurPrimalData.tmp_vec_b);
VecDestroy(petscSchurPrimalData.tmp_vec_primal);
MatDestroy(mat_schur_primal);
KSPDestroy(ksp_schur_primal);
}
void PetscSolverFeti::createFetiKsp()
{
FUNCNAME("PetscSolverFeti::createFetiKsp()");
petscFetiData.mat_primal_primal = &mat_primal_primal;
petscFetiData.mat_primal_b = &mat_primal_b;
petscFetiData.mat_b_primal = &mat_b_primal;
petscFetiData.mat_lagrange = &mat_lagrange;
petscFetiData.ksp_b = &ksp_b;
petscFetiData.ksp_schur_primal = &ksp_schur_primal;
MatGetVecs(mat_b_b, PETSC_NULL, &(petscFetiData.tmp_vec_b));
MatGetVecs(mat_primal_primal, PETSC_NULL, &(petscFetiData.tmp_vec_primal));
MatGetVecs(mat_lagrange, PETSC_NULL, &(petscFetiData.tmp_vec_lagrange));
MatCreateShell(PETSC_COMM_WORLD,
nRankLagrange, nRankLagrange,
nOverallLagrange, nOverallLagrange,
&petscFetiData, &mat_feti);
MatShellSetOperation(mat_feti, MATOP_MULT, (void(*)(void))petscMultMatFeti);
KSPCreate(PETSC_COMM_WORLD, &ksp_feti);
KSPSetOperators(ksp_feti, mat_feti, mat_feti, SAME_NONZERO_PATTERN);
KSPSetOptionsPrefix(ksp_feti, "solver_feti_");
KSPSetFromOptions(ksp_feti);
}
void PetscSolverFeti::destroyFetiKsp()
{
FUNCNAME("PetscSolverFeti::destroyFetiKsp()");
petscFetiData.mat_primal_primal = PETSC_NULL;
petscFetiData.mat_primal_b = PETSC_NULL;
petscFetiData.mat_b_primal = PETSC_NULL;
petscFetiData.mat_lagrange = PETSC_NULL;
petscFetiData.ksp_b = PETSC_NULL;
petscFetiData.ksp_schur_primal = PETSC_NULL;
VecDestroy(petscFetiData.tmp_vec_b);
VecDestroy(petscFetiData.tmp_vec_primal);
VecDestroy(petscFetiData.tmp_vec_lagrange);
MatDestroy(mat_feti);
KSPDestroy(ksp_feti);
}
void PetscSolverFeti::recoverSolution(Vec &vec_sol_b,
Vec &vec_sol_primal,
SystemVector &vec)
{
FUNCNAME("PetscSolverFeti::recoverSolution()");
int nComponents = vec.getSize();
// === ===
PetscScalar *localSolB;
VecGetArray(vec_sol_b, &localSolB);
// === ===
vector<PetscInt> globalIsIndex, localIsIndex;
globalIsIndex.reserve(globalPrimalIndex.size() * nComponents);
localIsIndex.reserve(globalPrimalIndex.size() * nComponents);
{
int counter = 0;
for (DofMapping::iterator it = globalPrimalIndex.begin();
it != globalPrimalIndex.end(); ++it) {
for (int i = 0; i < nComponents; i++) {
globalIsIndex.push_back(it->second * nComponents + i);
localIsIndex.push_back(counter++);
}
}
}
IS globalIs, localIs;
ISCreateGeneral(PETSC_COMM_SELF,
globalIsIndex.size(),
&(globalIsIndex[0]),
PETSC_USE_POINTER,
&globalIs);
ISCreateGeneral(PETSC_COMM_SELF,
localIsIndex.size(),
&(localIsIndex[0]),
PETSC_USE_POINTER,
&localIs);
Vec local_sol_primal;
VecCreateSeq(PETSC_COMM_SELF, localIsIndex.size(), &local_sol_primal);
VecScatter primalScatter;
VecScatterCreate(vec_sol_primal, globalIs, local_sol_primal, localIs, &primalScatter);
VecScatterBegin(primalScatter, vec_sol_primal, local_sol_primal,
INSERT_VALUES, SCATTER_FORWARD);
VecScatterEnd(primalScatter, vec_sol_primal, local_sol_primal,
INSERT_VALUES, SCATTER_FORWARD);
ISDestroy(globalIs);
ISDestroy(localIs);
VecScatterDestroy(primalScatter);
PetscScalar *localSolPrimal;
VecGetArray(local_sol_primal, &localSolPrimal);
for (int i = 0; i < nComponents; i++) {
DOFVector<double>& dofVec = *(vec.getDOFVector(i));
for (DofMapping::iterator it = globalIndexB.begin();
it != globalIndexB.end(); ++it) {
int petscIndex = (it->second - rStartB) * nComponents + i;
dofVec[it->first] = localSolB[petscIndex];
}
int counter = 0;
for (DofMapping::iterator it = globalPrimalIndex.begin();
it != globalPrimalIndex.end(); ++it) {
dofVec[it->first] = localSolPrimal[counter * nComponents + i];
counter++;
}
}
VecRestoreArray(vec_sol_b, &localSolB);
VecRestoreArray(local_sol_primal, &localSolPrimal);
VecDestroy(local_sol_primal);
}
void PetscSolverFeti::fillPetscMatrix(Matrix<DOFMatrix*> *mat,
SystemVector *vec)
{
......@@ -489,14 +730,14 @@ namespace AMDiS {
// === ===
VecCreate(PETSC_COMM_WORLD, &vec_b);
VecSetSizes(vec_b, nRankB * nComponents, nOverallB * nComponents);
VecSetType(vec_b, VECMPI);
VecCreate(PETSC_COMM_WORLD, &f_b);
VecSetSizes(f_b, nRankB * nComponents, nOverallB * nComponents);
VecSetType(f_b, VECMPI);
VecCreate(PETSC_COMM_WORLD, &vec_primal);
VecSetSizes(vec_primal, nRankPrimals * nComponents,
VecCreate(PETSC_COMM_WORLD, &f_primal);
VecSetSizes(f_primal, nRankPrimals * nComponents,
nOverallPrimals * nComponents);
VecSetType(vec_primal, VECMPI);
VecSetType(f_primal, VECMPI);
for (int i = 0; i < nComponents; i++) {
DOFVector<double>::Iterator dofIt(vec->getDOFVector(i), USED_DOFS);
......@@ -508,29 +749,32 @@ namespace AMDiS {
index = globalPrimalIndex[index] * nComponents + i;
double value = *dofIt;
VecSetValues(vec_primal, 1, &index, &value, ADD_VALUES);
VecSetValues(f_primal, 1, &index, &value, ADD_VALUES);
} else {
TEST_EXIT_DBG(globalIndexB.count(index))
("Should not happen!\n");
index = globalIndexB[index] * nComponents + i;
double value = *dofIt;
VecSetValues(vec_b, 1, &index, &value, ADD_VALUES);
VecSetValues(f_b, 1, &index, &value, ADD_VALUES);
}
}
}
VecAssemblyBegin(vec_b);
VecAssemblyEnd(vec_b);
VecAssemblyBegin(f_b);
VecAssemblyEnd(f_b);
VecAssemblyBegin(vec_primal);
VecAssemblyEnd(vec_primal);
VecAssemblyBegin(f_primal);
VecAssemblyEnd(f_primal);
createMatLagrange(nComponents);
MSG("FINISHED!\n");
exit(0);
createSchurPrimalKsp(nComponents);
createFetiKsp();
}
......@@ -538,14 +782,248 @@ namespace AMDiS {
{
FUNCNAME("PetscSolverFeti::solvePetscMatrix()");
MatDestroy(mat_b_b);
MatDestroy(mat_primal_primal);
MatDestroy(mat_b_primal);
MatDestroy(mat_primal_b);
MatDestroy(mat_lagrange);
int debug = 0;
Parameters::get("parallel->debug feti", debug);
if (debug) {
int nComponents = vec.getSize();
Mat mat_lagrange_transpose;
MatTranspose(mat_lagrange, MAT_INITIAL_MATRIX, &mat_lagrange_transpose);
Mat A;
Mat nestedA[3][3];
nestedA[0][0] = mat_b_b;
nestedA[0][1] = mat_b_primal;
nestedA[0][2] = mat_lagrange_transpose;
nestedA[1][0] = mat_primal_b;
nestedA[1][1] = mat_primal_primal;
nestedA[1][2] = PETSC_NULL;
nestedA[2][0] = mat_lagrange;
nestedA[2][1] = PETSC_NULL;
nestedA[2][2] = PETSC_NULL;
MatCreateNest(PETSC_COMM_WORLD, 3, PETSC_NULL, 3, PETSC_NULL, &(nestedA[0][0]), &A);
MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY);
MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY);
int nRankNest = (nRankB + nRankPrimals) * nComponents + nRankLagrange;
int nOverallNest = (nOverallB + nOverallPrimals) * nComponents + nOverallLagrange;
int rStartNest = (rStartB + rStartPrimals) * nComponents + rStartLagrange;
{
int matRow, matCol;
MatGetLocalSize(A, &matRow, &matCol);
TEST_EXIT_DBG(matRow == nRankNest)("Should not happen!\n");
mpi::globalAdd(matRow);
TEST_EXIT_DBG(matRow == nOverallNest)("Should not happen!\n");
MatGetOwnershipRange(A, &matRow, &matCol);
TEST_EXIT_DBG(matRow == rStartNest)("Should not happen!\n");
}
Vec f;
VecCreate(PETSC_COMM_WORLD, &f);
VecSetSizes(f, nRankNest, nOverallNest);
VecSetType(f, VECMPI);
Vec b;
VecDuplicate(f, &b);
PetscScalar *local_f_b;
VecGetArray(f_b, &local_f_b);
{
int size;
VecGetLocalSize(f_b, &size);
TEST_EXIT_DBG(size == nRankB * nComponents)("Should not happen!\n");
}
PetscScalar *local_f_primal;
VecGetArray(f_primal, &local_f_primal);
{
int size;
VecGetLocalSize(f_primal, &size);
TEST_EXIT_DBG(size == nRankPrimals * nComponents)("Should not happen!\n");
}
PetscScalar *local_f;
VecGetArray(f, &local_f);
int index = 0;
for (int i = 0; i < nRankB * nComponents; i++)
local_f[index++] = local_f_b[i];
for (int i = 0; i < nRankPrimals * nComponents; i++)
local_f[index++] = local_f_primal[i];
VecRestoreArray(f, &local_f);
VecRestoreArray(f_b, &local_f_b);
VecRestoreArray(f_primal, &local_f_primal);
KSP ksp;
KSPCreate(PETSC_COMM_WORLD, &ksp);
KSPSetOperators(ksp, A, A, SAME_NONZERO_PATTERN);
KSPSetFromOptions(ksp);
KSPSolve(ksp, f, b);
Vec u_b, u_primal;
VecDuplicate(f_b, &u_b);
VecDuplicate(f_primal, &u_primal);
PetscScalar *local_b;
VecGetArray(b, &local_b);
PetscScalar *local_u_b;
VecGetArray(u_b, &local_u_b);
PetscScalar *local_u_primal;
VecGetArray(u_primal, &local_u_primal);
index = 0;
for (int i = 0; i < nRankB * nComponents; i++)
local_u_b[i] = local_b[index++];
for (int i = 0; i < nRankPrimals * nComponents; i++)
local_u_primal[i] = local_b[index++];
for (int i = 0; i < nRankLagrange; i++) {
MSG("MY %d-ith Lagrange: %f\n", i, local_b[index++]);
}
VecRestoreArray(f, &local_b);
VecRestoreArray(u_b, &local_u_b);
VecRestoreArray(u_primal, &local_u_primal);
recoverSolution(u_b, u_primal, vec);
VecDestroy(u_b);
VecDestroy(u_primal);
VecDestroy(b);
VecDestroy(f);
KSPDestroy(ksp);
} else {
KSPCreate(PETSC_COMM_WORLD, &ksp_b);
KSPSetOperators(ksp_b, mat_b_b, mat_b_b, SAME_NONZERO_PATTERN);
KSPSetOptionsPrefix(ksp_b, "solver_b_");
KSPSetFromOptions(ksp_b);
Vec vec_rhs;
Vec tmp_b0, tmp_b1, tmp_lagrange0, tmp_primal0, tmp_primal1;
MatGetVecs(mat_lagrange, PETSC_NULL, &tmp_lagrange0);
MatGetVecs(mat_lagrange, PETSC_NULL, &vec_rhs);
MatGetVecs(mat_b_b, PETSC_NULL, &tmp_b0);
MatGetVecs(mat_b_b, PETSC_NULL, &tmp_b1);
MatGetVecs(mat_primal_primal, PETSC_NULL, &tmp_primal0);
MatGetVecs(mat_primal_primal, PETSC_NULL, &tmp_primal1);
// === Create new rhs ===
// vec_rhs = L * inv(K_BB) * f_b
KSPSolve(ksp_b, f_b, tmp_b0);
MatMult(mat_lagrange, tmp_b0, vec_rhs);
// tmp_primal0 = M_PiB * inv(K_BB) * f_b
MatMult(mat_primal_b, tmp_b0, tmp_primal0);
// tmp_primal0 = f_Pi - M_PiB * inv(K_BB) * f_b
// VecAXPBY(tmp_primal0, 1.0, -1.0, f_primal);
VecAXPBY(tmp_primal0, -1.0, 1.0, f_primal);
// tmp_primal0 = inv(S_PiPi) (f_Pi - M_PiB * inv(K_BB) * f_b)
KSPSolve(ksp_schur_primal, tmp_primal0, tmp_primal0);
//
MatMult(mat_b_primal, tmp_primal0, tmp_b0);
KSPSolve(ksp_b, tmp_b0, tmp_b0);
MatMult(mat_lagrange, tmp_b0, tmp_lagrange0);
//
VecAXPBY(vec_rhs, 1.0, 1.0, tmp_lagrange0);
// === Solve with FETI-DP operator. ===
KSPSolve(ksp_feti, vec_rhs, vec_rhs);
// === Solve for u_primals. ===
VecCopy(f_primal, tmp_primal0);
KSPSolve(ksp_b, f_b, tmp_b0);
MatMult(mat_primal_b, tmp_b0, tmp_primal1);
VecAXPBY(tmp_primal0, -1.0, 1.0, tmp_primal1);
MatMultTranspose(mat_lagrange, vec_rhs, tmp_b0);
KSPSolve(ksp_b, tmp_b0, tmp_b0);
MatMult(mat_primal_b, tmp_b0, tmp_primal1);
VecAXPBY(tmp_primal0, 1.0, 1.0, tmp_primal1);
KSPSolve(ksp_schur_primal, tmp_primal0, tmp_primal0);
// === Solve for u_b. ===
VecCopy(f_b, tmp_b0);
MatMultTranspose(mat_lagrange, vec_rhs, tmp_b1);
VecAXPBY(tmp_b0, -1.0, 1.0, tmp_b1);
MatMult(mat_b_primal, tmp_primal0, tmp_b1);
VecAXPBY(tmp_b0, -1.0, 1.0, tmp_b1);
KSPSolve(ksp_b, tmp_b0, tmp_b0);
// === And recover AMDiS solution vectors. ===
recoverSolution(tmp_b0, tmp_primal0, vec);
// === Destroy all data structures. ===
VecDestroy(vec_rhs);
VecDestroy(tmp_b0);
VecDestroy(tmp_b1);
VecDestroy(tmp_lagrange0);
VecDestroy(tmp_primal0);
VecDestroy(tmp_primal1);
KSPDestroy(ksp_b);
MatDestroy(mat_b_b);
MatDestroy(mat_primal_primal);
MatDestroy(mat_b_primal);
MatDestroy(mat_primal_b);
MatDestroy(mat_lagrange);
VecDestroy(f_b);
VecDestroy(f_primal);
destroySchurPrimalKsp();
destroyFetiKsp();
}
VecDestroy(vec_b);
VecDestroy(vec_primal);
}
#endif
......
AMDiS/src/parallel/PetscSolverFeti.h
+ 70
− 2
View file @ ed38dcb2
......@@ -32,6 +32,37 @@ namespace AMDiS {
#ifdef HAVE_PETSC_DEV
struct PetscSchurPrimalData {
Mat *mat_primal_b, *mat_b_primal, *mat_primal_primal;
Vec tmp_vec_b;
Vec tmp_vec_primal;
KSP *ksp_b;
};
struct PetscFetiData {
Mat *mat_primal_b, *mat_b_primal, *mat_primal_primal;
Mat *mat_lagrange;
Vec tmp_vec_b;
Vec tmp_vec_primal;
Vec tmp_vec_lagrange;
KSP *ksp_b;
KSP *ksp_schur_primal;
};
class PetscSolverFeti : public PetscSolver
{
public:
......@@ -63,6 +94,22 @@ namespace AMDiS {
void createMatLagrange(int nComponents);
void createSchurPrimalKsp(int nComponents);
void destroySchurPrimalKsp();
void createFetiKsp();
void destroyFetiKsp();
void recoverSolution(Vec &vec_sol_b,
Vec &vec_sol_primal,
SystemVector &vec);
protected:
DofIndexSet primals;
......@@ -72,6 +119,8 @@ namespace AMDiS {
int nOverallPrimals;
int rStartPrimals;
DofIndexSet duals;
DofMapping globalDualIndex;
......@@ -83,6 +132,8 @@ namespace AMDiS {
int nRankLagrange;
int nOverallLagrange;
int rStartLagrange;
DofMapping globalIndexB;
......@@ -100,9 +151,26 @@ namespace AMDiS {
Mat mat_lagrange;
Vec vec_b;
Vec f_b, f_primal;
KSP ksp_b;
KSP ksp_schur_primal;
Mat mat_schur_primal;
PetscSchurPrimalData petscSchurPrimalData;
KSP ksp_feti;
Mat mat_feti;
Vec vec_primal;
PetscFetiData petscFetiData;
};
#endif
......
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