Port TrustRegionSolver to current dune-fufem

See merge request ag-sander/dune/dune-elasticity!78

Parts of the TrustRegionSolver code still relied on the old basis interface of dune-fufem. That is now being removed from dune-fufem, and this patch does (some of) the corresponding cleanup in dune-elasticity.

Use assembleGlobalBasisTransferMatrix instead of assembleBasisInterpolationMatrix

See merge request ag-sander/dune/dune-elasticity!77

It is so old that there is nothing of value in it anymore.

The latter has been removed from dune-fufem.

Re-enable linear-elasticity by removing Amiramesh components

See merge request ag-sander/dune/dune-elasticity!64

Adjust Mooney-Rivlin energy in the Ciarlet case s.t. W(I)=0

See merge request ag-sander/dune/dune-elasticity!75

remove dangling header reference

See merge request ag-sander/dune/dune-elasticity!76

This is done by subtracting "dim" or "1" at the given terms.
Now it is consistent with the other 2 cases of MR energy.

Add assembleGradient() method to FE assemblers

See merge request agnumpde/dune-elasticity!72

This adds a method to compute only the gradient.

On the pro side it saves
a lot of time if only the gradient is needed (for first order methods).

On the con side it introduces some duplicated code (but only for hyberdual
numbers).

A test case is added.

Some improvements on exception handling

See merge request agnumpde/dune-elasticity!74

Otherwise the type of the exception gets lost.

Some regularizing algorithms based on exceptions filter the exceptions by type to detect math errors such as ill-formed systems or inputs.

Rename deprecated getCollectiveCommunication()

See merge request agnumpde/dune-elasticity!73

See https://gitlab.dune-project.org/core/dune-common/-/merge_requests/1091

ADOL-C: do not put the rank into trace_off()

See merge request agnumpde/dune-elasticity!70

Following the doc at

https://github.com/coin-or/ADOL-C/blob/master/ADOL-C/doc/adolc-manual.pdf

this enforces writing the tapes to disk and has nothing to do with the actual
taping. From the doc:

"By setting the optional integer argument file of trace off to 1, the user may force a
numbered tape file to be written even if the tape array (buffer) does not overflow. If the
argument file is omitted, it defaults to 0, so that the tape array is written onto a tape file
only if the length of any of the buffers exceeds [OLVT]BUFSIZE elements."

Fix in Mooney-Rivlin density: Use proper 4th term for Ciarlet

See merge request agnumpde/dune-elasticity!69

In Ciarlet the last factor is left unspecified. I could not follow the
choice used in this implementation. I guess it was intended to minimize
the energy under a hydrostatic stress F = t*I at the unit matrix, i.e.,
for t=1. A simple calculation shows that (independent on the dimension)

d = 2a + 4b + 2c

has to hold in this case. Values in the test were adjusted.

Improve hyperdual class

See merge request agnumpde/dune-elasticity!68

Fix in mooneyrivlindensity

See merge request agnumpde/dune-elasticity!67

Square the determinant in the Ciarlet variant

This makes the program compile again, but it will not run. Further changes in the data readers has to be made.

Replace DUNE_DEPRECATED by [[deprecated]]

See merge request agnumpde/dune-elasticity!65